Lsi01G000080 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G000080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Excitatory amino acid transporter
Location	chr01: 127854 .. 128981 (+)
RNA-Seq Expression	Lsi01G000080
Synteny	Lsi01G000080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGAATTAACACTCACTTCAAGTGGGCCAAAAGGAAAATAATAATAATAATAATTCTTGAGCTGATAAATTGATAACTTGGCCGTAGAAAAATAGTGGAGGGTTGAAGGTGTCACCAAATTACGAAGCAGTGCACTAACAGTGGAAAGAGGGAGATCGCTCTTCCGGCTGAACACCAAATTATCGATTCGCTGACATTAGAACATGGCATGGAGTGCGACGATGATCGGAGCGCTTCTGGGCCTCGGCACTCAGATGTACTCCAATGCTCTCCGTAAACTCCCTTACATGCGCCGTACGTTCCTCTCTTACAATGAAACCCTAATCTTTTCCTTTCCCGATCAGACTTTTCATAACCCTTCCCTTGTTTTCGATTTCTATAATCGATTCCATCTCCTAATTTTGCAGATCCTTGGGAGCACTTGGTTGGAATGGGACTGGGAGCCGTGTTCGTCAATCAGATGGTCAAATGGGACGCTAAGCTCCAGGAGGACCTTGACAAGATGCTCGAAAAGGCCAAAGCTGCCAACGAGCGCCGCTACTTTGGTATTGTTCTTTTTCTCTTATCTTATTTCCTTTATGTTCCTCTAATATCTTATTTTTGTTTTTGTACCATTGCAAATTTTGATTGCCGCACTTACTCTTATATCAAGTCCATCGATTCGCGCTAGGTATTTATACCTAACGAATGTCGTCTCCTTTTTTTTTTGTGCGACTTCCCGCCTTATATCGTGTGAGGTCGTACAGTTTGACCAATGTTCTATAACTTTCGAAGGATCAGAAGAAGATAATCGTCTGCACTTGGATTGGAATATGCTAGACCAATGTCTCGTTAATTCCGCGTTAGACCACAATTACATAGAAAATATTAAGTTATTAGGTTATTGTAATTTTAAGAGAGGAAAAAGTGGCATTTTTAAATGAACAAGAAATTACAAGAAGTGAGATCAGAAAAGAAGAGATTAGGGAGATCAGATATTTCCCCAGTCAAGGTGCATGTAGGAAACACCCCCCATTGCAATTAATGAGATGGAGTGATTAGTTTAGGTACGCAAATCCCCATTTCAAGTAGAGATCATATTAAGTTATAACGTTGTGTTGTTCCTTTCTATCAAAGAGACCGCGGGG

mRNA sequence

GCAGAATTAACACTCACTTCAAGTGGGCCAAAAGGAAAATAATAATAATAATAATTCTTGAGCTGATAAATTGATAACTTGGCCGTAGAAAAATAGTGGAGGGTTGAAGGTGTCACCAAATTACGAAGCAGTGCACTAACAGTGGAAAGAGGGAGATCGCTCTTCCGGCTGAACACCAAATTATCGATTCGCTGACATTAGAACATGGCATGGAGTGCGACGATGATCGGAGCGCTTCTGGGCCTCGGCACTCAGATGTACTCCAATGCTCTCCGTAAACTCCCTTACATGCGCCATCCTTGGGAGCACTTGGTTGGAATGGGACTGGGAGCCGTGTTCGTCAATCAGATGGTCAAATGGGACGCTAAGCTCCAGGAGGACCTTGACAAGATGCTCGAAAAGGCCAAAGCTGCCAACGAGCGCCGCTACTTTGGTATTGTTCTTTTTCTCTTATCTTATTTCCTTTATGTTCCTCTAATATCTTATTTTTGTTTTTGTACCATTGCAAATTTTGATTGCCGCACTTACTCTTATATCAAGTCCATCGATTCGCGCTAGGTATTTATACCTAACGAATGTCGTCTCCTTTTTTTTTTGTGCGACTTCCCGCCTTATATCGTGTGAGGTCGTACAGTTTGACCAATGTTCTATAACTTTCGAAGGATCAGAAGAAGATAATCGTCTGCACTTGGATTGGAATATGCTAGACCAATGTCTCGTTAATTCCGCGTTAGACCACAATTACATAGAAAATATTAAGTTATTAGGTTATTGTAATTTTAAGAGAGGAAAAAGTGGCATTTTTAAATGAACAAGAAATTACAAGAAGTGAGATCAGAAAAGAAGAGATTAGGGAGATCAGATATTTCCCCAGTCAAGGTGCATGTAGGAAACACCCCCCATTGCAATTAATGAGATGGAGTGATTAGTTTAGGTACGCAAATCCCCATTTCAAGTAGAGATCATATTAAGTTATAACGTTGTGTTGTTCCTTTCTATCAAAGAGACCGCGGGG

Coding sequence (CDS)

ATGGCATGGAGTGCGACGATGATCGGAGCGCTTCTGGGCCTCGGCACTCAGATGTACTCCAATGCTCTCCGTAAACTCCCTTACATGCGCCATCCTTGGGAGCACTTGGTTGGAATGGGACTGGGAGCCGTGTTCGTCAATCAGATGGTCAAATGGGACGCTAAGCTCCAGGAGGACCTTGACAAGATGCTCGAAAAGGCCAAAGCTGCCAACGAGCGCCGCTACTTTGGTATTGTTCTTTTTCTCTTATCTTATTTCCTTTATGTTCCTCTAATATCTTATTTTTGTTTTTGTACCATTGCAAATTTTGATTGCCGCACTTACTCTTATATCAAGTCCATCGATTCGCGCTAG

Protein sequence

MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDLDKMLEKAKAANERRYFGIVLFLLSYFLYVPLISYFCFCTIANFDCRTYSYIKSIDSR

Homology

[Close]

BLAST of Lsi01G000080 vs. ExPASy TrEMBL
Match: A0A5A7UAL0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G00090 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.7e-36
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQ+VKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYFG 78
          DKML+KAKAANERRYFG
Sbjct: 61 DKMLDKAKAANERRYFG 77

[Close]

BLAST of Lsi01G000080 vs. ExPASy TrEMBL
Match: A0A6J1KPJ8 (uncharacterized protein LOC111497120 OS=Cucurbita maxima OX=3661 GN=LOC111497120 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.4e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEH+VGMGLGAVFVNQ+VKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKMLEKAKAANERRYF
Sbjct: 61 DKMLEKAKAANERRYF 76

[Close]

BLAST of Lsi01G000080 vs. ExPASy TrEMBL
Match: A0A0A0KJ47 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538720 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.4e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQ+VKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKML+KAKAANERRYF
Sbjct: 61 DKMLDKAKAANERRYF 76

[Close]

BLAST of Lsi01G000080 vs. ExPASy TrEMBL
Match: A0A067GPI2 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034827mg PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.4e-35
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHL+GMGLGAVFVNQ+VKWDA+LQ+DL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60

Query: 61 DKMLEKAKAANERRYFG 78
          DKMLEKAKAANERRYFG
Sbjct: 61 DKMLEKAKAANERRYFG 77

[Close]

BLAST of Lsi01G000080 vs. ExPASy TrEMBL
Match: A0A2H5P542 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_104510 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.4e-35
Identity = 73/77 (94.81%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHL+GMGLGAVFVNQ+VKWDA+LQ+DL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60

Query: 61 DKMLEKAKAANERRYFG 78
          DKMLEKAKAANERRYFG
Sbjct: 61 DKMLEKAKAANERRYFG 77

[Close]

BLAST of Lsi01G000080 vs. NCBI nr
Match: KAE8647788.1 (hypothetical protein Csa_003686 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 6.4e-41
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQ+VKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYFGIVLFLLSYFLYVPLISY 95
          DKML+KAKAANERRYFGI   L SYFLYVPLI +
Sbjct: 61 DKMLDKAKAANERRYFGICFLLSSYFLYVPLIPF 94

[Close]

BLAST of Lsi01G000080 vs. NCBI nr
Match: KAA0052414.1 (uncharacterized protein E6C27_scaffold120G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 75/77 (97.40%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQ+VKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYFG 78
          DKML+KAKAANERRYFG
Sbjct: 61 DKMLDKAKAANERRYFG 77

[Close]

BLAST of Lsi01G000080 vs. NCBI nr
Match: KAG2689400.1 (hypothetical protein I3760_09G137100 [Carya illinoinensis] >KAG6696262.1 hypothetical protein I3842_09G139500 [Carya illinoinensis] >KAG7963797.1 hypothetical protein I3843_09G135800 [Carya illinoinensis])

HSP 1 Score: 157.5 bits (397), Expect = 6.9e-35
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEH+VGMGLGAVFVNQ+VKWDA+LQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVNQLVKWDAQLQEDL 60

Query: 61 DKMLEKAKAANERRYFGIVLFLLSY 86
          DKML+KAKAANERRYFG    LL +
Sbjct: 61 DKMLDKAKAANERRYFGNFFLLLLF 85

[Close]

BLAST of Lsi01G000080 vs. NCBI nr
Match: XP_008439421.1 (PREDICTED: uncharacterized protein LOC103484235 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 9.0e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQ+VKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKML+KAKAANERRYF
Sbjct: 61 DKMLDKAKAANERRYF 76

[Close]

BLAST of Lsi01G000080 vs. NCBI nr
Match: XP_023003551.1 (uncharacterized protein LOC111497120 [Cucurbita maxima])

HSP 1 Score: 157.1 bits (396), Expect = 9.0e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEH+VGMGLGAVFVNQ+VKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          DKMLEKAKAANERRYF
Sbjct: 61 DKMLEKAKAANERRYF 76

[Close]

BLAST of Lsi01G000080 vs. TAIR 10
Match: AT4G20150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 138.7 bits (348), Expect = 3.1e-33
Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQMVKWDAKLQEDL 60
          M  SATM+GALLGLGTQMYSNALRKLPYMRHPWEH+VGMGLGAVF NQ+VKWD KL+EDL
Sbjct: 1  MPISATMVGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFANQLVKWDVKLKEDL 60

Query: 61 DKMLEKAKAANERRYF 77
          D ML KA+AANERRYF
Sbjct: 61 DVMLAKARAANERRYF 76

The following BLAST results are available for this feature:

BLAST of Lsi01G000080 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G000080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAL0	6.7e-36	97.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1KPJ8	4.4e-35	97.37	uncharacterized protein LOC111497120 OS=Cucurbita maxima OX=3661 GN=LOC111497120...	[more]
A0A0A0KJ47	4.4e-35	97.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538720 PE=4 SV=1	[more]
A0A067GPI2	4.4e-35	94.81	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034827mg PE=4 SV=1	[more]
A0A2H5P542	4.4e-35	94.81	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_104510 PE=4 SV=1	[more]

BLAST of Lsi01G000080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647788.1	6.4e-41	91.49	hypothetical protein Csa_003686 [Cucumis sativus]	[more]
KAA0052414.1	1.4e-35	97.40	uncharacterized protein E6C27_scaffold120G00090 [Cucumis melo var. makuwa]	[more]
KAG2689400.1	6.9e-35	88.24	hypothetical protein I3760_09G137100 [Carya illinoinensis] >KAG6696262.1 hypothe...	[more]
XP_008439421.1	9.0e-35	97.37	PREDICTED: uncharacterized protein LOC103484235 [Cucumis melo]	[more]
XP_023003551.1	9.0e-35	97.37	uncharacterized protein LOC111497120 [Cucurbita maxima]	[more]

BLAST of Lsi01G000080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20150.1	3.1e-33	85.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 53..73
None	No IPR available	PANTHER	PTHR36052	EXCITATORY AMINO ACID TRANSPORTER	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G000080.1	Lsi01G000080.1	mRNA