Lcy13g015740 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g015740
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CSC1-like protein RXW8 isoform X1
Location	Chr13: 42978804 .. 42979160 (-)
RNA-Seq Expression	Lcy13g015740
Synteny	Lcy13g015740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCACCTTCTAATCTTTGGAGAGGTTTTAACCTCTCTAAAAAACCCAACTTTGAGAGATAACGAGAGATTTTTAAATCAAGTTTTATGCATTAAAAGATCGTTTGGCCTTTCATCTTCTTGTCCTTATTTTTATGCATTAAAAGATCTTTTGGCCTTTCTTCCCCTTCCCCAAAATGAAAACTTTTGCTTAGATAGATTTTTTCCTTCCCCTAACCGGGTATTGAAAGTTTGGGAAACTATTGAAGAAGAAATATTGGCTATTGATGGTTTGAATGCTAGTAGTTTTTCTCAGAATAATTATATTCAAGTTGGTTGCACCTCTCCTAACATTGGTTTTGACTTTGGATTGTGA

mRNA sequence

ATGGTCCACCTTCTAATCTTTGGAGAGGTTTTAACCTCTCTAAAAAACCCAACTTTGAGAGATAACGAGAGATTTTTAAATCAAGTTTTATGCATTAAAAGATCGTTTGGCCTTTCATCTTCTTGTCCTTATTTTTATGCATTAAAAGATCTTTTGGCCTTTCTTCCCCTTCCCCAAAATGAAAACTTTTGCTTAGATAGATTTTTTCCTTCCCCTAACCGGGTATTGAAAGTTTGGGAAACTATTGAAGAAGAAATATTGGCTATTGATGGTTTGAATGCTAGTAGTTTTTCTCAGAATAATTATATTCAAGTTGGTTGCACCTCTCCTAACATTGGTTTTGACTTTGGATTGTGA

Coding sequence (CDS)

ATGGTCCACCTTCTAATCTTTGGAGAGGTTTTAACCTCTCTAAAAAACCCAACTTTGAGAGATAACGAGAGATTTTTAAATCAAGTTTTATGCATTAAAAGATCGTTTGGCCTTTCATCTTCTTGTCCTTATTTTTATGCATTAAAAGATCTTTTGGCCTTTCTTCCCCTTCCCCAAAATGAAAACTTTTGCTTAGATAGATTTTTTCCTTCCCCTAACCGGGTATTGAAAGTTTGGGAAACTATTGAAGAAGAAATATTGGCTATTGATGGTTTGAATGCTAGTAGTTTTTCTCAGAATAATTATATTCAAGTTGGTTGCACCTCTCCTAACATTGGTTTTGACTTTGGATTGTGA

Protein sequence

MVHLLIFGEVLTSLKNPTLRDNERFLNQVLCIKRSFGLSSSCPYFYALKDLLAFLPLPQNENFCLDRFFPSPNRVLKVWETIEEEILAIDGLNASSFSQNNYIQVGCTSPNIGFDFGL

Homology

[Close]

BLAST of Lcy13g015740 vs. ExPASy TrEMBL
Match: A0A6J1BRB6 (CSC1-like protein RXW8 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004883 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 52 LAFLPLPQNENFCLDRFFPSPNRVLKVWETIEEEILAIDGLNASSF 98
          +A   L ++E FCLDRF PSP+ +LK WET EEEILA+DGL+A  F
Sbjct: 42 IASRKLKRSETFCLDRFVPSPSWILKAWETTEEEILALDGLDAVVF 87

[Close]

BLAST of Lcy13g015740 vs. ExPASy TrEMBL
Match: A0A5A7V290 (CSC1-like protein RXW8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001120 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 52 LAFLPLPQNENFCLDRFFPSPNRVLKVWETIEEEILAIDGLNASSF 98
          +A   L   E FCLDRF PSP+ ++K WET EEEILA+DGL+A  F
Sbjct: 42 IATKKLKHCETFCLDRFVPSPSWIVKAWETSEEEILALDGLDAVVF 87

[Close]

BLAST of Lcy13g015740 vs. ExPASy TrEMBL
Match: A0A0A0LNP4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G352960 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 52 LAFLPLPQNENFCLDRFFPSPNRVLKVWETIEEEILAIDGLNASSF 98
          +A   L   E FCLDRF PSP+ ++K WET EEEILA+DGL+A  F
Sbjct: 42 IATKKLKHCETFCLDRFVPSPSWIVKAWETSEEEILALDGLDAVVF 87

[Close]

BLAST of Lcy13g015740 vs. ExPASy TrEMBL
Match: A0A1S3BBB2 (CSC1-like protein RXW8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487808 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 52 LAFLPLPQNENFCLDRFFPSPNRVLKVWETIEEEILAIDGLNASSF 98
          +A   L   E FCLDRF PSP+ ++K WET EEEILA+DGL+A  F
Sbjct: 42 IATKKLKHCETFCLDRFVPSPSWIVKAWETSEEEILALDGLDAVVF 87

[Close]

BLAST of Lcy13g015740 vs. ExPASy TrEMBL
Match: A0A6J1KJY1 (CSC1-like protein RXW8 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496406 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.2e-05
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 52 LAFLPLPQNENFCLDRFFPSPNRVLKVWETIEEEILAIDGLNASSF 98
          +A   L   E FC DRF PSP+ ++K WET EEEILA+DGL++  F
Sbjct: 42 IASRKLKHCETFCFDRFVPSPSWIVKAWETTEEEILALDGLDSVVF 87

[Close]

BLAST of Lcy13g015740 vs. NCBI nr
Match: XP_022131814.1 (CSC1-like protein RXW8 isoform X1 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-06
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 52 LAFLPLPQNENFCLDRFFPSPNRVLKVWETIEEEILAIDGLNASSF 98
          +A   L ++E FCLDRF PSP+ +LK WET EEEILA+DGL+A  F
Sbjct: 42 IASRKLKRSETFCLDRFVPSPSWILKAWETTEEEILALDGLDAVVF 87

[Close]

BLAST of Lcy13g015740 vs. NCBI nr
Match: KAA0060977.1 (CSC1-like protein RXW8 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-05
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 52 LAFLPLPQNENFCLDRFFPSPNRVLKVWETIEEEILAIDGLNASSF 98
          +A   L   E FCLDRF PSP+ ++K WET EEEILA+DGL+A  F
Sbjct: 42 IATKKLKHCETFCLDRFVPSPSWIVKAWETSEEEILALDGLDAVVF 87

[Close]

BLAST of Lcy13g015740 vs. NCBI nr
Match: XP_008444513.1 (PREDICTED: CSC1-like protein RXW8 isoform X1 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-05
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 52 LAFLPLPQNENFCLDRFFPSPNRVLKVWETIEEEILAIDGLNASSF 98
          +A   L   E FCLDRF PSP+ ++K WET EEEILA+DGL+A  F
Sbjct: 42 IATKKLKHCETFCLDRFVPSPSWIVKAWETSEEEILALDGLDAVVF 87

[Close]

BLAST of Lcy13g015740 vs. NCBI nr
Match: XP_031737131.1 (CSC1-like protein RXW8 isoform X1 [Cucumis sativus] >KGN62417.1 hypothetical protein Csa_018675 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-05
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 52 LAFLPLPQNENFCLDRFFPSPNRVLKVWETIEEEILAIDGLNASSF 98
          +A   L   E FCLDRF PSP+ ++K WET EEEILA+DGL+A  F
Sbjct: 42 IATKKLKHCETFCLDRFVPSPSWIVKAWETSEEEILALDGLDAVVF 87

[Close]

BLAST of Lcy13g015740 vs. NCBI nr
Match: XP_038885520.1 (CSC1-like protein RXW8 isoform X1 [Benincasa hispida])

HSP 1 Score: 57.4 bits (137), Expect = 9.8e-05
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 52 LAFLPLPQNENFCLDRFFPSPNRVLKVWETIEEEILAIDGLNASSF 98
          +A   L   E FCLDRF PSP+ ++K WET EEEILA DGL+A  F
Sbjct: 42 IATRKLKHCETFCLDRFVPSPSWIVKAWETSEEEILAHDGLDAVVF 87

[Close]

BLAST of Lcy13g015740 vs. TAIR 10
Match: AT1G10090.1 (Early-responsive to dehydration stress protein (ERD4) )

HSP 1 Score: 41.6 bits (96), Expect = 5.2e-04
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 0


Query: 66 DRFFPSPNRVLKVWETIEEEILAIDGLNASSF 98
          +RF PSP+ ++K WET EEE+LA  GL+A  F
Sbjct: 56 ERFAPSPSWLVKAWETTEEEMLAAAGLDAVVF 87

[Close]

BLAST of Lcy13g015740 vs. TAIR 10
Match: AT1G58520.2 (lipases;hydrolases, acting on ester bonds )

HSP 1 Score: 41.6 bits (96), Expect = 5.2e-04
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 0


Query: 63  FCLDRFFPSPNRVLKVWETIEEEILAIDGLNASSF 98
           F  +RF PSP+ ++K WET E+E+LA  GL+A  F
Sbjct: 329 FWYERFVPSPSWLVKAWETSEDELLAAAGLDAVVF 363

[Close]

BLAST of Lcy13g015740 vs. TAIR 10
Match: AT1G58520.1 (lipases;hydrolases, acting on ester bonds )

HSP 1 Score: 41.6 bits (96), Expect = 5.2e-04
Identity = 18/35 (51.43%), Postives = 25/35 (71.43%), Query Frame = 0


Query: 63 FCLDRFFPSPNRVLKVWETIEEEILAIDGLNASSF 98
          F  +RF PSP+ ++K WET E+E+LA  GL+A  F
Sbjct: 53 FWYERFVPSPSWLVKAWETSEDELLAAAGLDAVVF 87

The following BLAST results are available for this feature:

BLAST of Lcy13g015740 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g015740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRB6	1.1e-06	60.87	CSC1-like protein RXW8 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004883...	[more]
A0A5A7V290	1.2e-05	58.70	CSC1-like protein RXW8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A0A0LNP4	1.2e-05	58.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G352960 PE=3 SV=1	[more]
A0A1S3BBB2	1.2e-05	58.70	CSC1-like protein RXW8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487808 PE=3 S...	[more]
A0A6J1KJY1	6.2e-05	54.35	CSC1-like protein RXW8 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496406 PE...	[more]

BLAST of Lcy13g015740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131814.1	2.3e-06	60.87	CSC1-like protein RXW8 isoform X1 [Momordica charantia]	[more]
KAA0060977.1	2.6e-05	58.70	CSC1-like protein RXW8 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_008444513.1	2.6e-05	58.70	PREDICTED: CSC1-like protein RXW8 isoform X1 [Cucumis melo]	[more]
XP_031737131.1	2.6e-05	58.70	CSC1-like protein RXW8 isoform X1 [Cucumis sativus] >KGN62417.1 hypothetical pro...	[more]
XP_038885520.1	9.8e-05	58.70	CSC1-like protein RXW8 isoform X1 [Benincasa hispida]	[more]

BLAST of Lcy13g015740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10090.1	5.2e-04	56.25	Early-responsive to dehydration stress protein (ERD4)	[more]
AT1G58520.2	5.2e-04	51.43	lipases;hydrolases, acting on ester bonds	[more]
AT1G58520.1	5.2e-04	51.43	lipases;hydrolases, acting on ester bonds	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g015740.1	Lcy13g015740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098655	cation transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005227	calcium activated cation channel activity