Lcy13g015320 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g015320
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRibosomal protein L7Ae/L30e/S12e/Gadd45 family protein
LocationChr13: 37598366 .. 37604036 (+)
RNA-Seq ExpressionLcy13g015320
SyntenyLcy13g015320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCACAGCATCATCACAATACTTGAATCCACATGTATCCTGTCGTTTATAGATTCTATCACCGTCAATGAATCAGACAACAATGTTAAATGCTTAAATTGCCGAATCTATCACGCATTCAACATTGTTGCCAAATGCATCCCTTCAAGCACCGCCAACGCTTCCGCTTCCAAAGGAGATGAGAACACTGTAGCACAAGCATTTCTCACCGCCTGTAAATTGCCGAATCTATCACGCATCACAATCCCCAAACCACATGTATACTGTCCTGCCACAACAGATGCATCTGTATGCATAATCAAATTCTCGTCCTCAGAAATTATTTTACCAACGTCATCCATTTTCTGAGTCGGAGTAATAGACCTCGGATTAGCCTTCAAGAATTCTTCCAGGTAGTCATTAATCCATTCACATCTATCCAATAAGTATCATAAAAAAAATTTAGACTTCTTAATGAAAATTTAAATTAGTGTATAAAATGAAAATATAACGTGCATAGCACGTTTTAAAGACTAGTATAATTAAAAAATACAAAACAGTTAACCATTATTTTCATTGGATGGAAAATTTTCAAAAGTAAATTTGGCATGTTTATCTACAATCAATTAAGTAAGGAGAACTATCTAATCTAAAATGATAATATGAAAAGTAATAAGATAAAAATAAAACTTCAAATTTTATCAAACCAATCTAAACTATAAAGTCAAATTATTATTATTTTTAATTTAATAGGTAGATGTTTAGTATAGACTAGTAGGCAAACACGTGCATAGCACGTGAAATTTGTAGTTTATTTTAAAATACAAATAAATGAAAACATTGAGAAAATAGTAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAAGAAGATAAATTATATTAAATTTAATGAACAGAAGCATAAAGTTTCAACATCTTATTATTTTCTATATAGATAAATTAGAATTTAATTTTATGTTATACGAAAATTTTAGTTGAAATTTAGATTTAAATGATAAATTTGAAGGTGTTAATATCTAACACGCGAAAGCAATTTTGGATCTTAGGCACATAATAACATCAATTTGATCATACAAAACATGTTGTCCAAAGCTACTAAAACTGAGTTTTGAATACCAACCTCTTTGTAGCTCAAAATTGGACCAATTGTTGTGTTGTTTTTCCTCACCAACTAATCACGAACTCATTTAGTAGTAAATGACGTTATAAAATAAGAGTGACTTATTTCTTGGTTCGATCTTGTGCAAACTCATTTACACAGGATGCCCCTACTGGCATGTCTCCACATGAACGATCCAGGATCACATCGTTTGTCTTGTTCGCAAAGTAGGTCGCATCCATAGTGTTGCCAGGATAAGGTACCTAGTCTTATCCCTATACTATAGACCATTTAGGTTACATACTCGAACTTGATCCCTATCTATATTTGCACATATAGTTCGAGTATTTCATGTTATAACCAAAGATGTTTATCTATTGGATTTAGGTTATATATAAACAAGCAATTCACTGAATAATACAATAACATATTTATTGCAAAAAGATTACAAACTATGAGTTTTAGGACATAAAACCCAACAAAATTATATATTATATGTTTTTTTTTAATAACTCCTATTATTTAATTATAACCTTTTATACTTCAATTTACTAAAATCGAAAGTGAATCAAATTCATTATTCTTCCTCACATTTCTTGAACTCAATAACAAAATGGCTAAATTATAAAAAATACACCTGAACTATGGGGTTTGTTTAAAAAATGCCCCTGAACTTTAAAAAGTTTCAAAAATGCCCATGAACTTTGAAAAATGTTTAAAAAATATCCTTGCCGTTAATTTTGGATGGAAACCGTTAAAGTTTGAGTTTCAAAAATACCCTTGAACTTTAAAACAAAATTAAAAAATACCCTTATTGAAAAATGCTTCTTTTTTTTTTTCACTCTCCCACCGTAAATTAACTCTTCTTCCAAAAATTAATGAGAAACTTTACTTTGTTGTCATGTATTCATAATCTAGGAGCTTTCTTTCTCTTTCAACACATCCAAAGCACTTGGCTAGATTTTCGTATCAAATCTTCAAGATGACTTTTGTTTTGTTCTTGAAATTCTACATGTGCTTGACTTTCAATATTATTTCCTCACCAACTATTACCCCATTAGCTTTCTCTATATTCCATTTACGAAAAATAAATGAAACTATTGTTGTATACGAATTCTAACAATTCTTAAATATCAATAAGAACAAAATCATATATAAAACTTTTGATTGATTAATCTTATAAATTAGACCAAACCCACAGTCTTATAAACATTTCTTCTTCTTATCATCAAGATACACAAACAGAGAGAGCAAAAAATGAAATAATATATATAAATATATATGTTGTTTTCTCACCCTTATCTTCTTTACGCTTCTTAAAAGAGAAAACTCGATTTCAAAGTTTTTTTTATCTGGTATTGAGTTGCACACAACCTTTATAAGCAAAGTTTTGCATTAATTTTCATGGAGAAAGAATTTACAGTGAGAGAGGAGGAAAAAAGAAGAATCAATTTTCAATAAGGGTATTTTTTAATTTTTTTTTTTTTTAAAGTTCGAGGGTATTTTTGAAACTCAAACTTTAACGGTTTCCATCCAAAATTAACAGCAAGGGTATTTTTGAAACATTCTTCAAAGTTCAGGGGTATTTTTGAAACTTTTTAAAGTTCAGGGGCATTTTTTAAACAAACCCTATAGTTCATTGGGCATTTTTTATAATTTAGCCTAACAAAATCATTACTTTTCATTAAAATTTGAATAGATACATATTTTAGATGATTTCTCTCTAGTATTTTCTTTCTTCTTTCTAATTCCCTTCGATTTGCTCCTCAATTTATTTTTTAACGCTAAACAATTTCTTTAAAAATTCTAAAAAGAAAAAAATTAAAAGAAATTTAAAACATATTATATTCTTCTTCATCTTATATTACTCTTCTTCCTTTGGCTTCTTATGCTTTTCTCCTCTCACAACTCCATGACTACATGCACCTAATTAGAAAACCAAGAAAATACAGAGATGTCAAAGAAACCCTAGAATAAACATTTTTTTTTTATTGTGATATTTAATGTATGTCTATTATCACAATGAAGTATATATACATTATATCTTTACAACATAATCATTACTATACTAAAAAAACCATTGATACATAGGTTTATGAGATTTATCTCATTGAACAAGGAGATTCAAGAGGAAAAAAAAAAAAAAAACCTAAATAGGGAAAAGGAAAAAAAAAATATTTAGGATGATTATTTATTATTGTCCATTTGTTTCCACTTTCGATCTTTGTCAGTACTCAACCTCCCGCCTCGAATCTTTGCCCCATCTTGAAGCATACGAAAAAATTCTCATATTCTAACCCTCTACTAAGAAGAAGGAATTCTGGCTATTTAAATAATCTTTACATATCAAACTTCACACAGAGAGCACTCAAATAAAGAAAACTAAATGTCCTACAATCGTAAGATTTTTTTTTTAAAACTAACAAAATATTTTAAAATAAATACTAATTAAAACGTCATAAAAATAATACTTGTTGATGCCAAAATAATACTTGTTGATGCAATCAAATTGTGCTAGAGTTTGTGATTATTGGGAAAAAAGAACTTGATACTTTGAATCCAAATTCACAACTCTATTTGTAAAACTTCAGAGGATCATTTTTTTCAAAAAAAAAAAAAAAAAAAAAATCAGAGGATCATTTCTCCTTTTCATTTCCTCATTTTGGATACCTAATTTGCCTGTTGAGTTCAAATGTTCAGTTTGTGATGGATTTTCTTGGATGTTAACCAACCAGTTCTCTACAAATTATATGTTTAGCAACTGGATTGATCTTTTGTGGTCTAATATGCGTACATCATGGTCCTTTATACACATTACATACTAGAATCCATGTCTATCCTATATTTCATGTAGGACTTTGTGAATTGATCTCTTTTTTGGTACTTGAAAGTATTTATAATTTGTTTCTCACCTCAGGTACAACTAGCAAATCATAACCAATTTTAATATCTACCATTGAAGAAGAAGAATTAGGTAGTATTCGTTAATTTTATGCAAAAATTTGGTATTTATAATCTGTTTACAATCTTCATGTTTGAGTTGTGCAAAAATTTTATGTTGTTTTCACATCAATTTAGTATGCCTTGGGGCAATTAGTGCCTTTGCTTCAGTATGGTGTATCGATTTAAAGTTTTCTTTAGTTTTTGGACGCTTATGTTCTATGCATGATTTAAAGCTTAAGAATAGAACTTTTTTCTACTAAGAAAGGTATGTCTTGCTTGAAACATAAATCATGGAAATTGGTTTGAAGAAAAGTAGAAGTAACAGATAATATGGTTGTTCACTGTTATGTAAAATGACTATGAGCTTTTATATCATAACGCCCCCTTTGAAATGAGTTAATGGTCAATGAGCAACTTTGAGTTTGTTTCAAAGAAGTTTAAGCCCTAAATTCATTAGGTACATGAGAAACAACTTTAAGCCCATTTTCAACACTTTAGAACCTTGTTCGTTGGTTTGTTGCTATCCTGCAGTTATGGTAGCACATTGCATGTATTTTGCTTGTAAACTTAAGGAAATTGGGCTAATCACGTGTTTGAAAGGTATGGAAAATTAGGGATGACTACTATCCCTAATTGCCATACTAAAAAACAACACGTACTGAAAACAAATAATTGTACACCATCTGTTTGAGTTTGATTTCAAGATGCAACCTATCGAAAGTTTTCATTGATATGAGTTTGGATAATAAGTCATTTTCTTCATATTTGGTCTAATGCAGCTATGCAAGATTGATTATGAAGGAAAGGCTAGAAAGGTTGTTGGGTGCATTTGTGTTGTAGTTAAGGTATGTTGTGTGTTTAAAGTGTACTTTGAAGCATATTTTTTTCGTGGTGTTATTTGCATTAGAGGTCTATATATATAAAGACTTTATGTTTGGAATTAGACTTACAAGAGCTTGATTTTGACATTTTTAGACGTGGTGTCATTTGACTTACAAGAATTTTGTTGGTGGTGGAGTAGCTGCTGCAAAAGCCAGAGAAGAAGGAAGAGAGTGATGACGAAGACCTTGGCCTTTCACTTTTTGATTAGTTCGTATAATTACTTGTTATTGTTTATCAATCTTGTAATTTTTAGTACTCAACTTTAGATTATGTGTTGATTTTTACTATGTAATTTCATAATCTTTATTTATAAACACATAATGTATATAGCTTGTTTCAATAAAAAAAAAAACACATTTACTCTTTAATTATTTTGTTGATTTACATATGTAGGCAAATTGTAATAACCAATCACTCTTGGAGTAGGGCAAAAAAAATTTAAATATAATTTTTAAAAAAAGGTTGTTGCCGATGCGGTCCACGGCGTCGGCAAAGTCATTTCTGCCCACGCGTATCACCATTACAATTTAACCGTACTTTCTCCCGACGCCGATAATACGACGTCGAGAAAGACTATTTCTGCCGACGCTGTTAAAAGTGGCGTCGGCAGAGGTTTTGCCGACTGGTTTATTTCGACGACCTTCCCGACGCCTAGATATGCGTCGGGAGAACTTTTGCTGACGCCGTTTTGGACTTCTGCCAACGCTTTTGCGCGTCGGGAAAAGGTTAATTTCTTGTAG

mRNA sequence

ATGTCCCACAGCATCATCACAATACTTGAATCCACATGTATCCTGTCGTTTATAGATTCTATCACCGTCAATGAATCAGACAACAATGTTAAATGCTTAAATTGCCGAATCTATCACGCATTCAACATTGTTGCCAAATGCATCCCTTCAAGCACCGCCAACGCTTCCGCTTCCAAAGGAGATGAGAACACTGTAGCACAAGCATTTCTCACCGCCTGTAAATTGCCGAATCTATCACGCATCACAATCCCCAAACCACATGTATACTGTCCTGCCACAACAGATGCATCTCTATGCAAGATTGATTATGAAGGAAAGGCTAGAAAGGTTGTTGGGTGCATTTGTGTTGTAGTTAAGGTTGTTGCCGATGCGGTCCACGGCGTCGGCAAAGTCATTTCTGCCCACGCGTATCACCATTACAATTTAACCGTACTTTCTCCCGACGCCGATAATACGACGTCGAGAAAGACTATTTCTGCCGACGCTGTTAAAAGTGGCGTCGGCAGAGGTTTTGCCGACTGGTTTATTTCGACGACCTTCCCGACGCCTAGATATGCGTCGGGAGAACTTTTGCTGACGCCGTTTTGGACTTCTGCCAACGCTTTTGCGCGTCGGGAAAAGGTTAATTTCTTGTAG

Coding sequence (CDS)

ATGTCCCACAGCATCATCACAATACTTGAATCCACATGTATCCTGTCGTTTATAGATTCTATCACCGTCAATGAATCAGACAACAATGTTAAATGCTTAAATTGCCGAATCTATCACGCATTCAACATTGTTGCCAAATGCATCCCTTCAAGCACCGCCAACGCTTCCGCTTCCAAAGGAGATGAGAACACTGTAGCACAAGCATTTCTCACCGCCTGTAAATTGCCGAATCTATCACGCATCACAATCCCCAAACCACATGTATACTGTCCTGCCACAACAGATGCATCTCTATGCAAGATTGATTATGAAGGAAAGGCTAGAAAGGTTGTTGGGTGCATTTGTGTTGTAGTTAAGGTTGTTGCCGATGCGGTCCACGGCGTCGGCAAAGTCATTTCTGCCCACGCGTATCACCATTACAATTTAACCGTACTTTCTCCCGACGCCGATAATACGACGTCGAGAAAGACTATTTCTGCCGACGCTGTTAAAAGTGGCGTCGGCAGAGGTTTTGCCGACTGGTTTATTTCGACGACCTTCCCGACGCCTAGATATGCGTCGGGAGAACTTTTGCTGACGCCGTTTTGGACTTCTGCCAACGCTTTTGCGCGTCGGGAAAAGGTTAATTTCTTGTAG

Protein sequence

MSHSIITILESTCILSFIDSITVNESDNNVKCLNCRIYHAFNIVAKCIPSSTANASASKGDENTVAQAFLTACKLPNLSRITIPKPHVYCPATTDASLCKIDYEGKARKVVGCICVVVKVVADAVHGVGKVISAHAYHHYNLTVLSPDADNTTSRKTISADAVKSGVGRGFADWFISTTFPTPRYASGELLLTPFWTSANAFARREKVNFL
Homology
[Close]
BLAST of Lcy13g015320 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 9.0e-04
Identity = 26/59 (44.07%), Postives = 32/59 (54.24%), Query Frame = 0 

Query: 73  CKLPNLSRITIPKPHVYCPATTDASLCKIDYEGKARKVVGCICVVVKVVADAVHGVGKV 132
           C   N+  +T+P           A LCKID EGKARKVVGC C+VVK   +   G+  V
Sbjct: 81  CAEHNVHLVTVPSAKT---LGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIV 136

[Close]
BLAST of Lcy13g015320 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 41.6 bits (96), Expect = 9.2e-04
Identity = 19/24 (79.17%), Postives = 20/24 (83.33%), Query Frame = 0 

Query: 96  ASLCKIDYEGKARKVVGCICVVVK 120
           A LCKID EG ARKVVGC C+VVK
Sbjct: 102 AGLCKIDSEGNARKVVGCSCLVVK 125

[Close]
BLAST of Lcy13g015320 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 41.6 bits (96), Expect = 9.2e-04
Identity = 19/24 (79.17%), Postives = 20/24 (83.33%), Query Frame = 0 

Query: 96  ASLCKIDYEGKARKVVGCICVVVK 120
           A LCKID EG ARKVVGC C+VVK
Sbjct: 102 AGLCKIDSEGNARKVVGCSCLVVK 125

The following BLAST results are available for this feature:
BLAST of Lcy13g015320 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9XHS09.0e-0444.0740S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1[more]
BLAST of Lcy13g015320 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lcy13g015320 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lcy13g015320 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G15930.29.2e-0479.17Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G15930.19.2e-0479.17Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g015320.1Lcy13g015320.1mRNA