Lcy13g013320 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g013320
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr13: 20677973 .. 20678850 (+)
RNA-Seq Expression	Lcy13g013320
Synteny	Lcy13g013320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCAATTAGCGACTATTGTCCGGTTTGCCATGAGGAAGTGGAGACTACTGATCATGCTTTATTTTGGTGTACTCGGGCTACGGAGGTAAGGGAGGGCATTCTCCCGATGATGGGGGAAGTCCTTAGGGCTCCCATGGATATTAAGGACCGATGGTTTAGTCTTGCGACCAGATTTGGTGATATGTTAGACCTTATATGTGTAGGGGCCTGGTCGATATGGAATGACAGGAATAATATTTATCACCATCGAGCTATTCCTAATGTCCAGTCTTGATGCGAGTGGATTTTGGATTATCTCGATGAGTTTAGAAAGGCCAATATTGTGGATGGGAAGTTAGTCCAATCAGTGGATGATGTTCGAAAGCTGATCGAAGAAGGAGAAGATGTTATATTTCATGTCGATGCAGCTTTTAATGAAATTAATGATAAGATTGGTATTGGATTGGTGTTCCGGGATACTTTTGGGAATCTAAAGGCAGCGAGGATGTTGGTCTCCTCTACTTGTACGAATCCTTTGGGTGCGGAAGCGGAAGTTGTCTTGGAAGGGCTCAGGACGACGAGTTCCATGCAGATGACGTTGTTAACAGTGATGTCAGATTCTTTAACTTTAGTAAAAACAATCAATGAAGAAATCCAATGTCAATCTTGTATAGCCACCACATTGTGGGACATCAAGGCTATTCGAAATACCTTTAGAATAGTAAGGTTCGAATATATCAATCGCAAGTATAATAAGCTTGCACATACATTAGCTCAGGAAGGGTTAGATACTCATTCTCATATGTGGATAGATAACTATCTTGATTGGATTAGTTCCTTAACGCTCCAAGAGCGTTCTCTGTTTGTATCCCTTCGGGGTCTTTCGTTGTCCTAA

mRNA sequence

ATGTCCCAATTAGCGACTATTGTCCGGTTTGCCATGAGGAAGTGGAGACTACTGATCATGCTTTATTTTGGTGTACTCGGGCTACGGAGAAAGGCCAATATTGTGGATGGGAAGTTAGTCCAATCAGTGGATGATGTTCGAAAGCTGATCGAAGAAGGAGAAGATGTTATATTTCATGTCGATGCAGCTTTTAATGAAATTAATGATAAGATTGGTATTGGATTGGTGTTCCGGGATACTTTTGGGAATCTAAAGGCAGCGAGGATGTTGGTCTCCTCTACTTGTACGAATCCTTTGGGTGCGGAAGCGGAAGTTGTCTTGGAAGGGCTCAGGACGACGAGTTCCATGCAGATGACGTTGTTAACAGTGATGTCAGATTCTTTAACTTTAGTAAAAACAATCAATGAAGAAATCCAATGTCAATCTTGTATAGCCACCACATTGTGGGACATCAAGGCTATTCGAAATACCTTTAGAATAGTAAGGTTCGAATATATCAATCGCAAGTATAATAAGCTTGCACATACATTAGCTCAGGAAGGGTTAGATACTCATTCTCATATGTGGATAGATAACTATCTTGATTGGATTAGTTCCTTAACGCTCCAAGAGCGTTCTCTGTTTGTATCCCTTCGGGGTCTTTCGTTGTCCTAA

Coding sequence (CDS)

ATGTCCCAATTAGCGACTATTGTCCGGTTTGCCATGAGGAAGTGGAGACTACTGATCATGCTTTATTTTGGTGTACTCGGGCTACGGAGAAAGGCCAATATTGTGGATGGGAAGTTAGTCCAATCAGTGGATGATGTTCGAAAGCTGATCGAAGAAGGAGAAGATGTTATATTTCATGTCGATGCAGCTTTTAATGAAATTAATGATAAGATTGGTATTGGATTGGTGTTCCGGGATACTTTTGGGAATCTAAAGGCAGCGAGGATGTTGGTCTCCTCTACTTGTACGAATCCTTTGGGTGCGGAAGCGGAAGTTGTCTTGGAAGGGCTCAGGACGACGAGTTCCATGCAGATGACGTTGTTAACAGTGATGTCAGATTCTTTAACTTTAGTAAAAACAATCAATGAAGAAATCCAATGTCAATCTTGTATAGCCACCACATTGTGGGACATCAAGGCTATTCGAAATACCTTTAGAATAGTAAGGTTCGAATATATCAATCGCAAGTATAATAAGCTTGCACATACATTAGCTCAGGAAGGGTTAGATACTCATTCTCATATGTGGATAGATAACTATCTTGATTGGATTAGTTCCTTAACGCTCCAAGAGCGTTCTCTGTTTGTATCCCTTCGGGGTCTTTCGTTGTCCTAA

Protein sequence

MSQLATIVRFAMRKWRLLIMLYFGVLGLRRKANIVDGKLVQSVDDVRKLIEEGEDVIFHVDAAFNEINDKIGIGLVFRDTFGNLKAARMLVSSTCTNPLGAEAEVVLEGLRTTSSMQMTLLTVMSDSLTLVKTINEEIQCQSCIATTLWDIKAIRNTFRIVRFEYINRKYNKLAHTLAQEGLDTHSHMWIDNYLDWISSLTLQERSLFVSLRGLSLS

Homology

[Close]

BLAST of Lcy13g013320 vs. ExPASy TrEMBL
Match: A0A7J9H483 (RNase H domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_004209 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-09
Identity = 45/149 (30.20%), Postives = 75/149 (50.34%), Query Frame = 0


Query: 34  IVDGKLVQSVDDVRKLIEEGEDVIFHVDAAFNEINDKIGIGLVFRDTFGNLKAARMLVSS 93
           I + KL   VD   K ++    V  + D AFN+ + +  +GLV RD  G +  ++ ++ S
Sbjct: 68  IEEKKLTLKVDRCHKYVDRRTSVAIYFDVAFNQQSFRFALGLVVRDVGGEILVSKTVLHS 127

Query: 94  TCTNPLGAEAEVVLEGLRTTSSMQMTLLTVMSDSLTLVKTINEEIQCQSCIATTLWDIKA 153
              +P  AEA   L+ +R   SM  ++L ++ DS T++K        +S I   + DI +
Sbjct: 128 DVASPFTAEAYAGLQAMRLGISMGFSILEIVGDSRTVIKKCQTTYFDRSVIGALIRDIHS 187

Query: 154 IRNTFRIVRFEYINRKYNKLAHTLAQEGL 183
            R  F+ + F +I +  N   H LA+E L
Sbjct: 188 KRVHFQEIGFHFILKTENTYTHILAKEAL 216

[Close]

BLAST of Lcy13g013320 vs. ExPASy TrEMBL
Match: A0A1U8PNG8 (uncharacterized protein LOC107960965 OS=Gossypium hirsutum OX=3635 GN=LOC107960965 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-09
Identity = 47/132 (35.61%), Postives = 66/132 (50.00%), Query Frame = 0


Query: 51  EEGEDVIFHVDAAFNEINDKIGIGLVFRDTFGNLKAARMLVSSTCTNPLGAEAEVVLEGL 110
           E G  V    DAAF+  N K   GLV     G L A R ++     +P   EA   L+ +
Sbjct: 543 EGGTSVTIQFDAAFDGRNFKSASGLVVWGRGGRLMATRTVLHRNVQSPFAVEALAGLQAV 602

Query: 111 RTTSSMQMTLLTVMSDSLTLVKTINEEIQCQSCIATTLWDIKAIRNTFRIVRFEYINRKY 170
           +  S M+   +TVM DSLT++K      + +S I   + DI    N F  +RF+++NR  
Sbjct: 603 KVGSEMEFPSVTVMGDSLTIIKKCKVMKRDKSAIGPIIHDIHNRINRFEDLRFQFLNRTE 662

Query: 171 NKLAHTLAQEGL 183
           N  AHT+A E L
Sbjct: 663 NDFAHTIAVEAL 674

[Close]

BLAST of Lcy13g013320 vs. ExPASy TrEMBL
Match: A0A7J9NBN3 (RNase H domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_018099 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-09
Identity = 46/149 (30.87%), Postives = 74/149 (49.66%), Query Frame = 0


Query: 34  IVDGKLVQSVDDVRKLIEEGEDVIFHVDAAFNEINDKIGIGLVFRDTFGNLKAARMLVSS 93
           I + KL+ + DD  +  E       + DAAF++ N +   GL+ R   G +  ++ ++ S
Sbjct: 72  IEEKKLIFADDDAPQTEESSTRTSIYFDAAFDQQNARSASGLLVRGEGGEILVSKSVIHS 131

Query: 94  TCTNPLGAEAEVVLEGLRTTSSMQMTLLTVMSDSLTLVKTINEEIQCQSCIATTLWDIKA 153
               P  AEA   L+ L    SM +T L +  DS T++K      Q +S I   + DI+ 
Sbjct: 132 NIGTPFAAEAHAGLQALELGRSMVLTDLQIKGDSKTIIKKCQSSEQDRSIIGAIIRDIQE 191

Query: 154 IRNTFRIVRFEYINRKYNKLAHTLAQEGL 183
           ++ +F  + F YI R  N  AH++A E L
Sbjct: 192 LKTSFNSIWFCYIPRTANIFAHSIAIEAL 220

[Close]

BLAST of Lcy13g013320 vs. ExPASy TrEMBL
Match: A0A7J9H6B7 (RNase H domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_004911 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-09
Identity = 40/128 (31.25%), Postives = 73/128 (57.03%), Query Frame = 0


Query: 56  VIFHVDAAFNEINDKIGIGLVFRDTFGNLKAARMLVSSTCTNPLGAEAEVVLEGLRTTSS 115
           +IF+ DA F++ N K   GLV R   G + A+++++ +  ++P  A+A   L+ +    S
Sbjct: 25  IIFNFDATFDKRNSKSASGLVVRGLMGAILASKIVLHNNVSSPFAAKAYAGLQAITLGIS 84

Query: 116 MQMTLLTVMSDSLTLVKTINEEIQCQSCIATTLWDIKAIRNTFRIVRFEYINRKYNKLAH 175
           M +  + +M DS T++K        +S I   + DI++ ++ F+ + F++I+R  N  AH
Sbjct: 85  MGILSVAIMGDSRTVIKKCQTTKPDKSVIGAIIRDIQSKKSHFQEINFQFIHRSENVYAH 144

Query: 176 TLAQEGLD 184
            LAQE L+
Sbjct: 145 KLAQEALE 152

[Close]

BLAST of Lcy13g013320 vs. ExPASy TrEMBL
Match: A0A5C7IST2 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000473 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.6e-09
Identity = 46/147 (31.29%), Postives = 80/147 (54.42%), Query Frame = 0


Query: 59  HVDAAFNEINDKIGIGLVFRDTFGNLKAARMLVSSTCTNPLGAEAEVVLEGLRTTSSMQM 118
           +VDAA +   +K  +G+V RD+ G +  +  LV +  T+   AEA+V+ EGL   +S  +
Sbjct: 248 NVDAALDVGRNKFSVGIVIRDSSGRILKSAALVFNGRTSTDIAEAKVIYEGLLLATSSGL 307

Query: 119 TLLTVMSDSLTLVKTINEEIQCQSCIATTLWDIKAIRNTFRIVRFEYINRKYNKLAHTLA 178
             L++ SDSL +V+  N EI  ++ +   + DI+ + +  R     YI R  N++AH +A
Sbjct: 308 QPLSIESDSLNVVRLCNGEISTRNDVFNVICDIQFLLSRERKTSISYIPRSCNRVAHEVA 367

Query: 179 QEGLD-THSHMWIDNYLDWISSLTLQE 205
           +  +   +S +  D Y  W+  L L +
Sbjct: 368 RRAIGLENSVIMYDPYPIWLQKLALSD 394

[Close]

BLAST of Lcy13g013320 vs. NCBI nr
Match: KAG8503655.1 (hypothetical protein CXB51_001673 [Gossypium anomalum])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-09
Identity = 46/141 (32.62%), Postives = 77/141 (54.61%), Query Frame = 0


Query: 43  VDDVRKLIEEGEDVIFHVDAAFNEINDKIGIGLVFRDTFGNLKAARMLVSSTCTNPLGAE 102
           +D +    EE   V    DAAF+  N K   GLV RD  G   A++ ++ +  ++P  AE
Sbjct: 1   MDKIHNQNEEITRVSIQFDAAFDNRNSKSTSGLVVRDQMGEFTASKTIIHNNISSPFAAE 60

Query: 103 AEVVLEGLRTTSSMQMTLLTVMSDSLTLVKTINEEIQCQSCIATTLWDIKAIRNTFRIVR 162
           A V L+ ++   S+ +  +T+M DS T++K        +S I   + DI++ R+ F+ + 
Sbjct: 61  AYVGLQAIKLGISIGLISVTIMGDSKTVIKKCRMTKPEKSVIGAIIRDIQSKRSCFQEIV 120

Query: 163 FEYINRKYNKLAHTLAQEGLD 184
           F++I+R  N  AH LA+E L+
Sbjct: 121 FQFIHRSENIHAHKLAKEALE 141

[Close]

BLAST of Lcy13g013320 vs. NCBI nr
Match: KAG8494167.1 (hypothetical protein CXB51_011859 [Gossypium anomalum])

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-09
Identity = 50/173 (28.90%), Postives = 90/173 (52.02%), Query Frame = 0


Query: 37  GKLVQSVDDVRKLIEE---GEDVIFHVDAAFNEINDKIGIGLVFRDTFGNLKAARMLVSS 96
           G+ +QS  D+R+ + E    + +    DA+FN+I     +G++ R+  G + AA      
Sbjct: 160 GERLQSKSDIRRPVWEPPNNDTIKIKFDASFNQITKCSILGIIARNKEGLIMAACTYPWE 219

Query: 97  TCTNPLGAEAEVVLEGLRTTSSMQMTLLTVMSDSLTLVKTINEEIQCQSCIATTLWDIKA 156
             ++P+ AEA   L+ +     +    + +  D+LT ++ +N     +SCI+  + +IK 
Sbjct: 220 YISDPVTAEARACLQTIVMAEELGFQDICIEGDTLTEIRKLNAAEDDRSCISNLIKEIKE 279

Query: 157 IRNTFRIVRFEYINRKYNKLAHTLAQEGLD-THSHMWIDNYLDWISSLTLQER 206
               FR VRF++++R  NK+AH +A+EG    H   WI+  L  +  L  Q+R
Sbjct: 280 RSYKFRRVRFKHVSRGANKVAHAMAKEGGHYEHPRFWIEEALQSVEILVNQKR 332

[Close]

BLAST of Lcy13g013320 vs. NCBI nr
Match: MBA0804637.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 72.4 bits (176), Expect = 5.4e-09
Identity = 45/149 (30.20%), Postives = 75/149 (50.34%), Query Frame = 0


Query: 34  IVDGKLVQSVDDVRKLIEEGEDVIFHVDAAFNEINDKIGIGLVFRDTFGNLKAARMLVSS 93
           I + KL   VD   K ++    V  + D AFN+ + +  +GLV RD  G +  ++ ++ S
Sbjct: 68  IEEKKLTLKVDRCHKYVDRRTSVAIYFDVAFNQQSFRFALGLVVRDVGGEILVSKTVLHS 127

Query: 94  TCTNPLGAEAEVVLEGLRTTSSMQMTLLTVMSDSLTLVKTINEEIQCQSCIATTLWDIKA 153
              +P  AEA   L+ +R   SM  ++L ++ DS T++K        +S I   + DI +
Sbjct: 128 DVASPFTAEAYAGLQAMRLGISMGFSILEIVGDSRTVIKKCQTTYFDRSVIGALIRDIHS 187

Query: 154 IRNTFRIVRFEYINRKYNKLAHTLAQEGL 183
            R  F+ + F +I +  N   H LA+E L
Sbjct: 188 KRVHFQEIGFHFILKTENTYTHILAKEAL 216

[Close]

BLAST of Lcy13g013320 vs. NCBI nr
Match: MBA0880702.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 71.6 bits (174), Expect = 9.2e-09
Identity = 46/149 (30.87%), Postives = 74/149 (49.66%), Query Frame = 0


Query: 34  IVDGKLVQSVDDVRKLIEEGEDVIFHVDAAFNEINDKIGIGLVFRDTFGNLKAARMLVSS 93
           I + KL+ + DD  +  E       + DAAF++ N +   GL+ R   G +  ++ ++ S
Sbjct: 72  IEEKKLIFADDDAPQTEESSTRTSIYFDAAFDQQNARSASGLLVRGEGGEILVSKSVIHS 131

Query: 94  TCTNPLGAEAEVVLEGLRTTSSMQMTLLTVMSDSLTLVKTINEEIQCQSCIATTLWDIKA 153
               P  AEA   L+ L    SM +T L +  DS T++K      Q +S I   + DI+ 
Sbjct: 132 NIGTPFAAEAHAGLQALELGRSMVLTDLQIKGDSKTIIKKCQSSEQDRSIIGAIIRDIQE 191

Query: 154 IRNTFRIVRFEYINRKYNKLAHTLAQEGL 183
           ++ +F  + F YI R  N  AH++A E L
Sbjct: 192 LKTSFNSIWFCYIPRTANIFAHSIAIEAL 220

[Close]

BLAST of Lcy13g013320 vs. NCBI nr
Match: MBA0805393.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 71.6 bits (174), Expect = 9.2e-09
Identity = 40/128 (31.25%), Postives = 73/128 (57.03%), Query Frame = 0


Query: 56  VIFHVDAAFNEINDKIGIGLVFRDTFGNLKAARMLVSSTCTNPLGAEAEVVLEGLRTTSS 115
           +IF+ DA F++ N K   GLV R   G + A+++++ +  ++P  A+A   L+ +    S
Sbjct: 25  IIFNFDATFDKRNSKSASGLVVRGLMGAILASKIVLHNNVSSPFAAKAYAGLQAITLGIS 84

Query: 116 MQMTLLTVMSDSLTLVKTINEEIQCQSCIATTLWDIKAIRNTFRIVRFEYINRKYNKLAH 175
           M +  + +M DS T++K        +S I   + DI++ ++ F+ + F++I+R  N  AH
Sbjct: 85  MGILSVAIMGDSRTVIKKCQTTKPDKSVIGAIIRDIQSKKSHFQEINFQFIHRSENVYAH 144

Query: 176 TLAQEGLD 184
            LAQE L+
Sbjct: 145 KLAQEALE 152

[Close]

BLAST of Lcy13g013320 vs. TAIR 10
Match: AT1G10000.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-07
Identity = 41/140 (29.29%), Postives = 71/140 (50.71%), Query Frame = 0


Query: 55  DVIFHVDAAFNEINDKIGIGLVFRDTFGNLKAARMLVSSTC---TNPLGAEAEVVLEGLR 114
           D + +VDAA+ + +   G G VF+ T  + K      S+ C    +PL AEA  +   + 
Sbjct: 159 DFLCYVDAAWQQQSSLAGSGWVFQATSHSEKEITTF-SAGCRRFPSPLAAEAWAIKSAML 218

Query: 115 TTSSMQMTLLTVMSDSLTLVKTINEEIQCQSCIATTLWDIKAIRNTFRIVRFEYINRKYN 174
               ++ + L V+SDS ++V  +N  +     I   L +I++IRN FR + F++I R  N
Sbjct: 219 HALQLERSDLLVLSDSKSIVDALNSNVSLNE-IFGLLVEIRSIRNRFRSISFQFIPRLVN 278

Query: 175 KLAHTLAQEGLDTHSHMWID 192
            +A   A+  L    ++ +D
Sbjct: 279 SIADAAAKLSLCISGNIGLD 296

[Close]

BLAST of Lcy13g013320 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 52.4 bits (124), Expect = 5.4e-07
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 0


Query: 61  DAAFNEINDKIGIGLVFRDTFGNLKAARMLVSSTCTNPLGAEAEVVLEGLRTTSSMQMTL 120
           DA F+    +   G + R+ +G   +   +  +  +NPL AE + +L  L+ T     T 
Sbjct: 339 DAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQ 398

Query: 121 LTVMSDSLTLVKTINEEIQCQSCIATTLWDIKAIRNTFRIVRFEYINRKYNKLAHTLAQE 180
           + +  D  TL+  IN  I   S +A  L DI    N F  ++F +I RK NKLAH LA+ 
Sbjct: 399 VFMEGDCQTLINLIN-GISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAKY 458

Query: 181 GLDTHS---------HMWIDNY 194
           G  T+S          +W+D Y
Sbjct: 459 GC-TYSTFYSGSGSLPIWLDRY 478

The following BLAST results are available for this feature:

BLAST of Lcy13g013320 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g013320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J9H483	2.6e-09	30.20	RNase H domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_0042...	[more]
A0A1U8PNG8	3.4e-09	35.61	uncharacterized protein LOC107960965 OS=Gossypium hirsutum OX=3635 GN=LOC1079609...	[more]
A0A7J9NBN3	4.5e-09	30.87	RNase H domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_0...	[more]
A0A7J9H6B7	4.5e-09	31.25	RNase H domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_0049...	[more]
A0A5C7IST2	7.6e-09	31.29	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000473 ...	[more]

BLAST of Lcy13g013320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG8503655.1	1.1e-09	32.62	hypothetical protein CXB51_001673 [Gossypium anomalum]	[more]
KAG8494167.1	1.1e-09	28.90	hypothetical protein CXB51_011859 [Gossypium anomalum]	[more]
MBA0804637.1	5.4e-09	30.20	hypothetical protein [Gossypium harknessii]	[more]
MBA0880702.1	9.2e-09	30.87	hypothetical protein [Gossypium schwendimanii]	[more]
MBA0805393.1	9.2e-09	31.25	hypothetical protein [Gossypium harknessii]	[more]

BLAST of Lcy13g013320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10000.1	3.2e-07	29.29	Ribonuclease H-like superfamily protein	[more]
AT3G09510.1	5.4e-07	31.69	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 60..180 e-value: 1.3E-19 score: 70.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 29..192 e-value: 1.4E-15 score: 59.3
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 58..204
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 58..204
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 60..178 e-value: 5.06979E-16 score: 69.6504
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 55..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g013320.1	Lcy13g013320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity