Lcy13g012980 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g012980
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ran guanine nucleotide release factor
Location	Chr13: 19567910 .. 19572458 (+)
RNA-Seq Expression	Lcy13g012980
Synteny	Lcy13g012980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGAAGATTTCTCTTCAGAGCGTGCTCTGTTCGGGGGCGCTATTGTTAGCACATTCCCTCTTAGATTCCAGGTTTGTCTTGTTCGATTGCGATTCTGTCTCTTTGCTTTTCGGTGTATAACTGTTTTTCTTTATTTGATTGATGAAATTTATGTATTTAGCTCGTGATTGTTGTAATTCTAGGACGTGAGCAACATCCGACAAGTCCCTGATCATCAGGTTGGTAGCATTTTGATGCTTTTATGAGGACAATCAAGGTCTTTTTTTTTTAAAAAAAAAAATTTAAAGGCCACAAGTTTGCCGAACACTAAAATTCATTTTTGAAAATGTTTGTGGTGGGTTCAAAGGAAGTGTTTGTGGATCCATCTCGGGATGAAAGCTTGATCTTTGAGCTTTTAGATTTTAAGCACGATGTTGGAGATAACGGAAGTGCTGTTTGGTTCCTTCAAGACCTTGCTACTGAGCAGGATGCAGAGGGAAGCATGGTAATCCTACTTCTAGTTCATGATACTTTCCTTTTCTATTTCTTATTGCTTGCTTCATCTGCTGTCAGTTAACATCCAAGTAGTTATTAGTAAGCTTCAATGCGAGATGGGTTCACGTGTTTTGGCTATTAAGTACTTGTTTAGTGATGAAGTCGGGTATGATATATGTATATGCCTGTGCGTAAACTATGTTCTGTCTATGATTGTTATTTTATTGCTTATTAGAGAATGTGTTGATTTGTGGGGAAGATCAGAGATGTTTCAAGTAGTTACTTATCCAATATTGGAAGACAGTTTGTATTGGAAATTTTGGTCTGTTTTAAGGATAAGTAGACGATGCTTGGAGGAAGGTTTCATTCCTTATACAGAAACTAATATCTTGCTTTTGATTACTATCTTTGGAAATGCGAGAAACACGAATATGTGTTAAGACCATACATCTTTTCTCTTGCTTAATCATGTAATATAATGTTACTACAAAAAACTATCTAAATAATATGATTTTATTTGTGCTGGTATTGGAGAAAGAGCTCATGGGGTGGGTCAGAGAATCAATAGTGCTCACAATACCCAGTTTAATAAAAATTTACTGCATGCTTGTATGTTAGGGAGAGGGGTGAAGAAGTAATGCAATCAAATTTATAACTTAAGAACTTTTTTCTAGATCAGTAGTAATTAGGATTACTATTTTTATCCTTTCTTATACTGGCGTCAGTTTCTTGATGTAGGAAATGGTCCTTGGTCTGTCTTCTAAGTTCAATTTCAAGAGATGGATGTTGTATTTTTTGTAGTCTGATGTTATGAGCCAATTCAAAGCACAGTCATGTTTTGTTCGTAGTTTGCCTTCTGTCCCACTGGAGAATTGCTTTGACGTTCTTGTGAATCCAATTAGTTTTCTTTTTACCTATAAATATTTGTGGTTTCATTTATTTGCATTTATCATCTCTTCTATGCATACTATTGCATGCTCTGAACTCTCTGGAATCATATCTTCTGTGCTTTACTTATGGTGCAATTTTACTCCAGGTGATTGAGCAATCTGGAGTGATCGAGGCGCCTGGATTGTGTTATGGAAATATACCTGGATTGTGTTATGGAAATATACCTTCTGTCGTAACAACTGCAATTGGCCAAATGGTATGTGTTGCTGCTGTGTGGTGTGTATCAATTACATGACCGGTTGAATTTTTCAGCTTCACTGCACATTCTTCATGTCATCTCACTTTATTTAGTAGTTTACTCTTGTTTCTAGAATCATCCTTCACAATAATATTAATTTTGCTTCCTGCTGAGTTCTATCTGGAAAATTTGCATGCTTGGCGTTGTTTGTCATGGACCTTCAACTCCAGCCATTCGCATATGTCTTGCATTGGCTACTTCTGAGTTAGTTTCTTTTGTTTTCATATGCATTGTGTGGATCACTATGTTCAGAAGTAGAGGGAAGAAGAAAATTACAGTTGATTTATAGCGTGATTTGACATTTTGTCTACATCCACTGTAAAAGATCAACTAAGCTTCAGTAAATGGTTTTGGAAGGAAATAATAGAGACCCTCCCCAAACGCTAAAAAGAAAAAAAGATAACCCTCTGTCAACTGTCAAGTCTGTAAATCCCCTTTCTCTTTAGCTCACATGTGGAAAGTAACACATTGAGAATCACATGCCTCTGTTATAATTATAAAATAATAATAACAACAATGTACTAACAAAAGGATCACATGGCAACGGTACTACTGTTTCACTTAACTGACACAAAATCTCTGTAGCAAATTGTCTTTCTTTGTCATGCTCGAGGTTATGCCAGCATTACTAGTCATTCTCATTGTTTCTACTTTCAACTATCAATTATATCTTGATAGAGTAGTCATTTTGGTCTAGATTTGTTGGGTTCAGATGTATCTGCAAGATATTCTAGGCTTGCCCAATCTGTTGTTGTTTTGTTCACAATGGTCATCAGATATCAGTTGAACTTCGATCTAGTCCACATTTTGAAATTTATGTCCAGTTTTCCTGCTCAATTGGTGGCAGTTGTTATGGTTACAAATCTCCATGACTTTGTCACACCGTTTCTTCCTTTTCTTTTCAATGGGTCTTGTTTCTGTCTGTGTAGGCAATTTCAAAGGGCCGACAAGGAAGAGAAGCTCAAAATATTGTCAGGGTAACCTTTCTTATTTTATTTACCCTAGTGCTTTGGTGGTTCCCAATGCTTTTTATAAAGTAAATCTGTTTACTACTTTATGCAGGTTTACCTGGCGAATCTACGTCTTAAAGGAGTTGGTACAGATGTGCTGATCTGTGCATATGAACCCATTCTTATAAAGTGAGTAATTACTCTCAAATAAAAGGGAAATGAACAAAATGCACTGTTAATTAACTTGGAAGGAAGGGGAAAAGAATCCGAACCTCCAGTCGTTTAAAAGTGATAGCTCTTGAGCTTAGTGTCTACTTAGATGCATAATCCTTACTATTCACATCACCACTCCACACATACACTTCTCTGACAAACTTGTTTAAGGGGCTCACATTCCCCTCACTACAAAAGATAACCTCCTGATACAAAAATGTTGACATGCCCGTAGTGTTTTTCTTCTCGTGTATGTAAAGCGTTTGGGAACTTAGACTTGTTCTATCCTATCCATACCCTTAGCCCAGACTTTCACTTTGTCCTCAAAATGAAGAGATGAAAGCTGTCGTGTGAATATATAACATGGCTGCGATGCTTCTTTTGGTAGTTGTCCTTCCTAGTGGATAGGATAGGATAAGTCTAAGTTCCCAAACGCTTTACATACACGAGAAGAAAAACACTAGGGGCATGTCAACATCGACCATAAGTTCATCAACTCATGATTGCACGCCCAAAGTTGCTTTTGGGCTTAGTTTAGCTCCATAGGGGCACTTAACTGAGGGGGTAATGGGCAGGGATGATAGAGCATTTGGCCAATCTCGACTGTGAAACATGAAATATTGGATGAGTTAATAGTTGTTGTGTCAAGAACCTCTTTGTGATAGGCAACCTTACCAACTCTTTTACCTATATAGGATAGGAACCAAGATCATACTAATGTAGGGGTTAGGTTATCATTCTCCTTGCCACTGGCTTCTATCTGCAAAATATATACAAACTCATCGGTCTTTTGGAATTTCTATTTTTCTCATATAGTCTAACACCTACACAATCCCCTATTATTTACATCAACCCACAAATAACTCCCCTAATAAACTTACTAAGGGTTCATTGTTCTCTCTACAAAAGATATCTTCCAGATGCATGACTAACTCAACATGCTAATTCCCCTCTGTTTTCCTTCTTGTATACATGAAGTTTTTTTTTGTATGTTCTTAATTTTAAATTTTAGATTAGTTACTACTTGTCACATACTTATAATCATAGTTCAAATTTCTCTATCATAAAACAATGCATGCAACTCTTCCTTCTTTAACAATGTTGATGGGTTTCCTACAACCAAGGTGCTGACGCTGAGTGCCTCAGGATTTTTATGATTGTAAATGTTTCATTTATGTGATTTGGTGCCAAGGAAGTTCAGTTTGGGGCAATTATGATCAAATGTTAATAGCCAGACTAACTCTTAAGGTCTCTTCTGGTGCAAGTACAGGAAAACATAATTTTGATAAACTAGAGAAACTGCATATTGAGATGGATTCTGAAAGGACAGTTTACTGTTTCAATCATTTTGTAGGGTGAGATAAGGGCCCAAGGATCCTTCTTAGTTGGCCAACTTGCCTAAGTTACCTTTTCTAATATGTGGCCCTGTCTGAAGCAAAGCCCATTTTCTTAAATCTTCACAAACCACAACCCAAATAGAAAAAAGTTTGCAGCTAGCACAGCATGTCATTCTTGTATCTGTCACTTGCCACTCTAATATAAATTATTTTGCTATCTTTTTGTGGTTGCAGTCCTCTGAGCGAAAGTGCTAGCTCAGTTGGCTCTGGTTTGGCCACTCCTGCTTCACAATCCGGATGCATGCCAATGTCTGAGGTATTCAAACTTGCAGCCTCCAGCTTTAAAGTCTATGACTGGAGCATTTTCGGCCTGCCAGCCTAA

mRNA sequence

ATGCCGGAAGATTTCTCTTCAGAGCGTGCTCTGTTCGGGGGCGCTATTGTTAGCACATTCCCTCTTAGATTCCAGGACGTGAGCAACATCCGACAAGTCCCTGATCATCAGGAAGTGTTTGTGGATCCATCTCGGGATGAAAGCTTGATCTTTGAGCTTTTAGATTTTAAGCACGATGTTGGAGATAACGGAAGTGCTGTTTGGTTCCTTCAAGACCTTGCTACTGAGCAGGATGCAGAGGGAAGCATGGTGATTGAGCAATCTGGAGTGATCGAGGCGCCTGGATTGTGTTATGGAAATATACCTGGATTGTGTTATGGAAATATACCTTCTGTCGTAACAACTGCAATTGGCCAAATGGCAATTTCAAAGGGCCGACAAGGAAGAGAAGCTCAAAATATTGTCAGGGTTTACCTGGCGAATCTACGTCTTAAAGGAGTTGGTACAGATGTGCTGATCTGTGCATATGAACCCATTCTTATAAATCCTCTGAGCGAAAGTGCTAGCTCAGTTGGCTCTGGTTTGGCCACTCCTGCTTCACAATCCGGATGCATGCCAATGTCTGAGGTATTCAAACTTGCAGCCTCCAGCTTTAAAGTCTATGACTGGAGCATTTTCGGCCTGCCAGCCTAA

Coding sequence (CDS)

ATGCCGGAAGATTTCTCTTCAGAGCGTGCTCTGTTCGGGGGCGCTATTGTTAGCACATTCCCTCTTAGATTCCAGGACGTGAGCAACATCCGACAAGTCCCTGATCATCAGGAAGTGTTTGTGGATCCATCTCGGGATGAAAGCTTGATCTTTGAGCTTTTAGATTTTAAGCACGATGTTGGAGATAACGGAAGTGCTGTTTGGTTCCTTCAAGACCTTGCTACTGAGCAGGATGCAGAGGGAAGCATGGTGATTGAGCAATCTGGAGTGATCGAGGCGCCTGGATTGTGTTATGGAAATATACCTGGATTGTGTTATGGAAATATACCTTCTGTCGTAACAACTGCAATTGGCCAAATGGCAATTTCAAAGGGCCGACAAGGAAGAGAAGCTCAAAATATTGTCAGGGTTTACCTGGCGAATCTACGTCTTAAAGGAGTTGGTACAGATGTGCTGATCTGTGCATATGAACCCATTCTTATAAATCCTCTGAGCGAAAGTGCTAGCTCAGTTGGCTCTGGTTTGGCCACTCCTGCTTCACAATCCGGATGCATGCCAATGTCTGAGGTATTCAAACTTGCAGCCTCCAGCTTTAAAGTCTATGACTGGAGCATTTTCGGCCTGCCAGCCTAA

Protein sequence

MPEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQMAISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPASQSGCMPMSEVFKLAASSFKVYDWSIFGLPA

Homology

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BLAST of Lcy13g012980 vs. ExPASy Swiss-Prot
Match: Q54ML6 (Probable ran guanine nucleotide release factor OS=Dictyostelium discoideum OX=44689 GN=mog1 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.1e-17
Identity = 66/206 (32.04%), Postives = 108/206 (52.43%), Query Frame = 0


Query: 1   MPEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60
           M E F  +R L+GGAI    P RF DV++ R +PDHQE+F D   D+S+I EL +F+  +
Sbjct: 1   MSETF-EKRQLYGGAIEIDIPRRFIDVTSYRHIPDHQELFSDEKSDQSVIIELNEFQDHI 60

Query: 61  GDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQM 120
             N +A+    ++  E   +  +  ++S ++    L    +P     +IP  V  A  Q 
Sbjct: 61  -SNANAIKHHYEVLVE---DAGISTDKSVILNFRELTQAEMPNF-DASIPKYVLLA--QQ 120

Query: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180
            I+K  +   A+N + +Y+A +RL+   TD+LI   E I + P S S + V +   TP++
Sbjct: 121 KIAKFNE--TAENTINIYMALVRLEKSKTDLLITFNEAIALAPTSSSVAVVQN--LTPSN 180

Query: 181 QSGCMPMSEVFKLAASSFKVYDWSIF 207
                   ++F     SFK+ D+S+F
Sbjct: 181 DQS--KSEQLFLTMLKSFKIKDYSLF 192

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BLAST of Lcy13g012980 vs. ExPASy Swiss-Prot
Match: A3KPP3 (Ran guanine nucleotide release factor OS=Danio rerio OX=7955 GN=rangrf PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.3e-15
Identity = 63/199 (31.66%), Postives = 96/199 (48.24%), Query Frame = 0


Query: 9   RALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDVGDNGSAVW 68
           R LFGGA+ + FP    D+S +RQ+PD+QEVF     D+S+I ELL+++  V D  +A +
Sbjct: 3   RPLFGGALSAVFPSSVMDISELRQIPDNQEVFAHSQTDQSIIIELLEYQSQVQDADAARY 62

Query: 69  FLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQMAISKGRQG 128
             +D+A    A  +   E   V + P                S      G   +SK  + 
Sbjct: 63  HFEDVAGSNKAIENGTWEVRVVEQVP-------QSEISMQECSSAWLLSGAQLVSKFNE- 122

Query: 129 REAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPASQSGCMPMS 188
            EA+N V V+    RL    TD+L+   +P+ INPLS SA+  G+  A P +        
Sbjct: 123 -EAKNTVNVHQCLFRLPQFTTDILMTFNDPVFINPLSSSAA--GNMEAIPWT-------L 182

Query: 189 EVFKLAASSFKVYDWSIFG 208
           + F+    S ++ D  +FG
Sbjct: 183 QDFQGVLQSLRLLDSGVFG 183

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BLAST of Lcy13g012980 vs. ExPASy Swiss-Prot
Match: Q32PE2 (Ran guanine nucleotide release factor OS=Bos taurus OX=9913 GN=RANGRF PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.4e-10
Identity = 63/202 (31.19%), Postives = 94/202 (46.53%), Query Frame = 0


Query: 8   ERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDVGDNGSAV 67
           +  LFGGA  +T P    DVS++R VPDHQEVF     D+SLI ELL+ +  V    +A 
Sbjct: 6   DNPLFGGAFSATLPPGAIDVSDLRPVPDHQEVFCHRVTDQSLIVELLELQAHVQGEEAAR 65

Query: 68  WFLQDLATEQDAEGSMV-IEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQMAISKGR 127
           +  +D+   Q+A    V   Q  V+E   L      G C            GQ  ++K  
Sbjct: 66  YHFEDVGGVQEARAVQVETVQPLVLEKLAL-----RGCC-----QEAWILSGQQQVAK-- 125

Query: 128 QGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVG-SGLATPASQSGCM 187
           + ++    V ++ A LRL    TD+L+   +     P  E+ SS+G   L+ P    G  
Sbjct: 126 ENQQVAKYVTLHQALLRLPQYQTDLLLTFNQ-----PPPENRSSLGPENLSIPPWSLG-- 184

Query: 188 PMSEVFKLAASSFKVYDWSIFG 208
                F+   +S  ++D +IFG
Sbjct: 186 ----DFEQLVTSLTLHDPNIFG 184

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BLAST of Lcy13g012980 vs. ExPASy Swiss-Prot
Match: Q9HD47 (Ran guanine nucleotide release factor OS=Homo sapiens OX=9606 GN=RANGRF PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-09
Identity = 58/197 (29.44%), Postives = 94/197 (47.72%), Query Frame = 0


Query: 11  LFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFL 70
           LFGGA  +  P+   DVS++R VPD+QEVF  P  D+SLI ELL+ +  V    +A +  
Sbjct: 9   LFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRGEAAARYHF 68

Query: 71  QDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQMAISKGRQGRE 130
           +D+   Q A  ++ +E    +    L    + G C            G+  I+K  + ++
Sbjct: 69  EDVGGVQGAR-AVHVESVQPLSLENLA---LRGRC-----QEAWVLSGKQQIAK--ENQQ 128

Query: 131 AQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPASQSGCMPMSEV 190
               V ++ A LRL    TD+L+   +     P  ++ SS+G    +PA  S        
Sbjct: 129 VAKDVTLHQALLRLPQYQTDLLLTFNQ-----PPPDNRSSLGPENLSPAPWS-----LGD 184

Query: 191 FKLAASSFKVYDWSIFG 208
           F+   +S  ++D +IFG
Sbjct: 189 FEQLVTSLTLHDPNIFG 184

[Close]

BLAST of Lcy13g012980 vs. ExPASy Swiss-Prot
Match: Q9JIB0 (Ran guanine nucleotide release factor OS=Mus musculus OX=10090 GN=Rangrf PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-09
Identity = 47/150 (31.33%), Postives = 72/150 (48.00%), Query Frame = 0


Query: 11  LFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDVGDNGSAVWFL 70
           LFGGA  +  P    DVS++R VPD+QEVF  P  D+SLI ELL+ +  V    +A +  
Sbjct: 9   LFGGAFSAILPTGAIDVSDLRPVPDNQEVFCHPVTDQSLIIELLELQAHVQGEAAARYHF 68

Query: 71  QDLATEQDAEGSMVIEQSGVIEAPGLCYGNIP--GLCYGNIPSVVTTAIGQMAISKGRQG 130
           +D+   Q A          V+    LC  N+   G C         +  G+  ++K  + 
Sbjct: 69  EDVGRVQGARA------VHVLSVQPLCLENLSLRGCCQD-----AWSLSGKQQVAK--EN 128

Query: 131 REAQNIVRVYLANLRLKGVGTDVLICAYEP 159
           ++    V ++ A LRL    TD+L+   +P
Sbjct: 129 QQVAKDVTLHQALLRLPQYQTDLLLTFNQP 145

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BLAST of Lcy13g012980 vs. ExPASy TrEMBL
Match: A0A6J1JJW2 (probable ran guanine nucleotide release factor OS=Cucurbita maxima OX=3661 GN=LOC111485103 PE=3 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 8.5e-98
Identity = 188/207 (90.82%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MPEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60
           M EDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV
Sbjct: 1   MAEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60

Query: 61  GDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQM 120
            DNGSAVWFLQDLATEQDAEGS+VIEQSGVIEA        PGLCY NIPSVVTTA+GQM
Sbjct: 61  EDNGSAVWFLQDLATEQDAEGSVVIEQSGVIEA--------PGLCYANIPSVVTTAVGQM 120

Query: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180
           AISKGRQGREAQNIVRVYLANLRLK VGTDVLICAYEPILINPLSESASSVGSGLATPAS
Sbjct: 121 AISKGRQGREAQNIVRVYLANLRLKAVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180

Query: 181 QSGCMPMSEVFKLAASSFKVYDWSIFG 208
           QSGC+PM EVFKLA SSFKV DWS+FG
Sbjct: 181 QSGCIPMPEVFKLALSSFKVCDWSVFG 199

[Close]

BLAST of Lcy13g012980 vs. ExPASy TrEMBL
Match: A0A6J1GZ86 (probable ran guanine nucleotide release factor OS=Cucurbita moschata OX=3662 GN=LOC111458863 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.9e-97
Identity = 186/207 (89.86%), Postives = 191/207 (92.27%), Query Frame = 0


Query: 1   MPEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60
           M EDFSSERALFGGAIVSTFP+RFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV
Sbjct: 1   MAEDFSSERALFGGAIVSTFPIRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60

Query: 61  GDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQM 120
            DNGSAVWFLQDLATEQDAEGS+VIEQSGVIE        +PGLCY NIPSVVTTA+GQM
Sbjct: 61  EDNGSAVWFLQDLATEQDAEGSVVIEQSGVIE--------VPGLCYANIPSVVTTAVGQM 120

Query: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180
           AISKGRQGREAQNIVRVYLANLRLK VGTDVLICAYEPILINPLSESASSVGSGL TPAS
Sbjct: 121 AISKGRQGREAQNIVRVYLANLRLKAVGTDVLICAYEPILINPLSESASSVGSGLTTPAS 180

Query: 181 QSGCMPMSEVFKLAASSFKVYDWSIFG 208
           QSGCMPM EVFKLA SSFKV DWS+FG
Sbjct: 181 QSGCMPMPEVFKLALSSFKVCDWSVFG 199

[Close]

BLAST of Lcy13g012980 vs. ExPASy TrEMBL
Match: A0A6J1DAG6 (probable ran guanine nucleotide release factor OS=Momordica charantia OX=3673 GN=LOC111019159 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.6e-96
Identity = 187/210 (89.05%), Postives = 193/210 (91.90%), Query Frame = 0


Query: 1   MPEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60
           MPEDFSSER LFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV
Sbjct: 1   MPEDFSSERPLFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60

Query: 61  GDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQM 120
           GD+GSAVWFLQDLA+EQDAEG+MVIEQSGVIEA        PGLC+GNI SVVTTA+GQM
Sbjct: 61  GDSGSAVWFLQDLASEQDAEGNMVIEQSGVIEA--------PGLCFGNITSVVTTAVGQM 120

Query: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180
           AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSV SGLATPAS
Sbjct: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVCSGLATPAS 180

Query: 181 QSGCMPMSEVFKLAASSFKVYDWSIFGLPA 211
           Q GCMPM EVFKLA SSFKV D S+FG PA
Sbjct: 181 QIGCMPMPEVFKLAVSSFKVNDRSLFGAPA 202

[Close]

BLAST of Lcy13g012980 vs. ExPASy TrEMBL
Match: A0A0A0KU01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605010 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.1e-96
Identity = 185/210 (88.10%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MPEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60
           M  DFS+ERALFGGAIVSTFPLRFQDVSN+RQVPDHQEVFVDPSRDESLIFELLDFKHDV
Sbjct: 1   MSADFSTERALFGGAIVSTFPLRFQDVSNVRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60

Query: 61  GDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQM 120
           GDNGSAVWFLQDLATEQDAEGS+VIEQSGVIEA        P LCYGNIPSV TTA+GQM
Sbjct: 61  GDNGSAVWFLQDLATEQDAEGSVVIEQSGVIEA--------PELCYGNIPSVATTAVGQM 120

Query: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180
           AISKGRQGREAQNIVRVYLANLRLKGVGTDVLI AYEPI+INPLSESASSVGSGLATPAS
Sbjct: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLISAYEPIVINPLSESASSVGSGLATPAS 180

Query: 181 QSGCMPMSEVFKLAASSFKVYDWSIFGLPA 211
            SG MPM EVFKLA SSFKV DWS+FG PA
Sbjct: 181 HSGYMPMPEVFKLAVSSFKVCDWSLFGAPA 202

[Close]

BLAST of Lcy13g012980 vs. ExPASy TrEMBL
Match: A0A1S3BEU3 (probable ran guanine nucleotide release factor OS=Cucumis melo OX=3656 GN=LOC103489108 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.8e-95
Identity = 183/210 (87.14%), Postives = 190/210 (90.48%), Query Frame = 0


Query: 1   MPEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60
           M  DFS+ER LFGGAIVSTFPLRFQDVSN+RQVPDHQEVFVDPSRDESLIFELLDFKHDV
Sbjct: 1   MSADFSTERPLFGGAIVSTFPLRFQDVSNVRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60

Query: 61  GDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQM 120
           GDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEA        PGLCYGNIP+V TTA+GQM
Sbjct: 61  GDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEA--------PGLCYGNIPTVATTAVGQM 120

Query: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180
           AISKGRQGREAQNIVRVYLANLRLKGVGTDVLI AYEPI+INPLSESASSVGSGL TPAS
Sbjct: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLISAYEPIVINPLSESASSVGSGLTTPAS 180

Query: 181 QSGCMPMSEVFKLAASSFKVYDWSIFGLPA 211
            SG +PM EVFKLA SSFKV DWS+FG PA
Sbjct: 181 HSGYIPMPEVFKLAVSSFKVCDWSLFGAPA 202

[Close]

BLAST of Lcy13g012980 vs. NCBI nr
Match: XP_038892350.1 (ran guanine nucleotide release factor [Benincasa hispida])

HSP 1 Score: 368.6 bits (945), Expect = 3.5e-98
Identity = 188/210 (89.52%), Postives = 194/210 (92.38%), Query Frame = 0


Query: 1   MPEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60
           MP DF SER LFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV
Sbjct: 1   MPADFCSERGLFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60

Query: 61  GDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQM 120
            DNGSAVWFLQDLATEQDAEGS+VIEQSGVIEA        PGLCYGNIPSVVTTA+GQM
Sbjct: 61  CDNGSAVWFLQDLATEQDAEGSVVIEQSGVIEA--------PGLCYGNIPSVVTTAVGQM 120

Query: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180
           +ISKGRQGREAQNIVRVYLANLRLKGVGTDVLI AYEPI+INPLSESASSVGSGLATPAS
Sbjct: 121 SISKGRQGREAQNIVRVYLANLRLKGVGTDVLISAYEPIVINPLSESASSVGSGLATPAS 180

Query: 181 QSGCMPMSEVFKLAASSFKVYDWSIFGLPA 211
           QSGCMPM+EVFKLA SSFKVYDWS+FG  A
Sbjct: 181 QSGCMPMAEVFKLAVSSFKVYDWSLFGTSA 202

[Close]

BLAST of Lcy13g012980 vs. NCBI nr
Match: XP_023552843.1 (probable ran guanine nucleotide release factor [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.5 bits (942), Expect = 7.9e-98
Identity = 189/207 (91.30%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MPEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60
           M EDFSSERALFGGAIVSTFP+RFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV
Sbjct: 1   MAEDFSSERALFGGAIVSTFPIRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60

Query: 61  GDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQM 120
            DNGSAVWFLQDLATEQDAEGS+VIEQSGVIEA        PGLCY NIPSVVTTA+GQM
Sbjct: 61  EDNGSAVWFLQDLATEQDAEGSVVIEQSGVIEA--------PGLCYANIPSVVTTAVGQM 120

Query: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180
           AISKGRQGREAQNIVRVYLANLRLK VGTDVLICAYEPILINPLSESASSVGSGLATPAS
Sbjct: 121 AISKGRQGREAQNIVRVYLANLRLKAVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180

Query: 181 QSGCMPMSEVFKLAASSFKVYDWSIFG 208
           QSGCMPM EVFKLA SSFKV DWSIFG
Sbjct: 181 QSGCMPMPEVFKLALSSFKVCDWSIFG 199

[Close]

BLAST of Lcy13g012980 vs. NCBI nr
Match: KAG6601426.1 (putative ran guanine nucleotide release factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 366.7 bits (940), Expect = 1.3e-97
Identity = 187/207 (90.34%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MPEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60
           M EDFSSERALFGGAIVSTFP+RFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV
Sbjct: 50  MAEDFSSERALFGGAIVSTFPIRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 109

Query: 61  GDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQM 120
            DNGSAVWFLQDLATEQDAEGS+VIEQSGVIE        +PGLCY NIPSVVTTA+GQM
Sbjct: 110 EDNGSAVWFLQDLATEQDAEGSVVIEQSGVIE--------VPGLCYANIPSVVTTAVGQM 169

Query: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180
           AISKGRQGREAQNIVRVYLANLRLK VGTDVLICAYEPILINPLSESASSVGSGLATPAS
Sbjct: 170 AISKGRQGREAQNIVRVYLANLRLKAVGTDVLICAYEPILINPLSESASSVGSGLATPAS 229

Query: 181 QSGCMPMSEVFKLAASSFKVYDWSIFG 208
           QSGCMPM EVFKLA SSFKV DWS+FG
Sbjct: 230 QSGCMPMPEVFKLALSSFKVCDWSVFG 248

[Close]

BLAST of Lcy13g012980 vs. NCBI nr
Match: XP_022987588.1 (probable ran guanine nucleotide release factor [Cucurbita maxima])

HSP 1 Score: 366.3 bits (939), Expect = 1.8e-97
Identity = 188/207 (90.82%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MPEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60
           M EDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV
Sbjct: 1   MAEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60

Query: 61  GDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQM 120
            DNGSAVWFLQDLATEQDAEGS+VIEQSGVIEA        PGLCY NIPSVVTTA+GQM
Sbjct: 61  EDNGSAVWFLQDLATEQDAEGSVVIEQSGVIEA--------PGLCYANIPSVVTTAVGQM 120

Query: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180
           AISKGRQGREAQNIVRVYLANLRLK VGTDVLICAYEPILINPLSESASSVGSGLATPAS
Sbjct: 121 AISKGRQGREAQNIVRVYLANLRLKAVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180

Query: 181 QSGCMPMSEVFKLAASSFKVYDWSIFG 208
           QSGC+PM EVFKLA SSFKV DWS+FG
Sbjct: 181 QSGCIPMPEVFKLALSSFKVCDWSVFG 199

[Close]

BLAST of Lcy13g012980 vs. NCBI nr
Match: XP_022957477.1 (probable ran guanine nucleotide release factor [Cucurbita moschata])

HSP 1 Score: 365.2 bits (936), Expect = 3.9e-97
Identity = 186/207 (89.86%), Postives = 191/207 (92.27%), Query Frame = 0


Query: 1   MPEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60
           M EDFSSERALFGGAIVSTFP+RFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV
Sbjct: 1   MAEDFSSERALFGGAIVSTFPIRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60

Query: 61  GDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQM 120
            DNGSAVWFLQDLATEQDAEGS+VIEQSGVIE        +PGLCY NIPSVVTTA+GQM
Sbjct: 61  EDNGSAVWFLQDLATEQDAEGSVVIEQSGVIE--------VPGLCYANIPSVVTTAVGQM 120

Query: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180
           AISKGRQGREAQNIVRVYLANLRLK VGTDVLICAYEPILINPLSESASSVGSGL TPAS
Sbjct: 121 AISKGRQGREAQNIVRVYLANLRLKAVGTDVLICAYEPILINPLSESASSVGSGLTTPAS 180

Query: 181 QSGCMPMSEVFKLAASSFKVYDWSIFG 208
           QSGCMPM EVFKLA SSFKV DWS+FG
Sbjct: 181 QSGCMPMPEVFKLALSSFKVCDWSVFG 199

[Close]

BLAST of Lcy13g012980 vs. TAIR 10
Match: AT1G69680.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 290.0 bits (741), Expect = 1.5e-78
Identity = 151/210 (71.90%), Postives = 170/210 (80.95%), Query Frame = 0


Query: 1   MPEDFSSERALFGGAIVSTFPLRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKHDV 60
           M  +  S R LFGGAI + FP RFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFK +V
Sbjct: 1   MSVELCSVRPLFGGAISTVFPQRFQDVSNIRQVPDHQEVFVDPSRDESLIFELLDFKAEV 60

Query: 61  GDNGSAVWFLQDLATEQDAEGSMVIEQSGVIEAPGLCYGNIPGLCYGNIPSVVTTAIGQM 120
           GD GSA WFL DLA+EQDAEG  +IEQS VIEA        PGL + NI +V TTAIG+M
Sbjct: 61  GDIGSASWFLNDLASEQDAEGFQLIEQSEVIEA--------PGLSFRNISAVATTAIGEM 120

Query: 121 AISKGRQGREAQNIVRVYLANLRLKGVGTDVLICAYEPILINPLSESASSVGSGLATPAS 180
           AISKGRQGREAQN+VRVY+AN+RLKGV TDVL+ AYEPILINPLSESA +VGSGLA PAS
Sbjct: 121 AISKGRQGREAQNLVRVYVANIRLKGVDTDVLVTAYEPILINPLSESADAVGSGLAVPAS 180

Query: 181 QSGCMPMSEVFKLAASSFKVYDWSIFGLPA 211
           QSG MPM ++ K + S+FKV DW++FG  A
Sbjct: 181 QSGKMPMCDIIKQSLSTFKVNDWNLFGSSA 202

The following BLAST results are available for this feature:

BLAST of Lcy13g012980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54ML6	7.1e-17	32.04	Probable ran guanine nucleotide release factor OS=Dictyostelium discoideum OX=44...	[more]
A3KPP3	2.3e-15	31.66	Ran guanine nucleotide release factor OS=Danio rerio OX=7955 GN=rangrf PE=2 SV=1	[more]
Q32PE2	6.4e-10	31.19	Ran guanine nucleotide release factor OS=Bos taurus OX=9913 GN=RANGRF PE=2 SV=1	[more]
Q9HD47	3.2e-09	29.44	Ran guanine nucleotide release factor OS=Homo sapiens OX=9606 GN=RANGRF PE=1 SV=...	[more]
Q9JIB0	3.2e-09	31.33	Ran guanine nucleotide release factor OS=Mus musculus OX=10090 GN=Rangrf PE=1 SV...	[more]

BLAST of Lcy13g012980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JJW2	8.5e-98	90.82	probable ran guanine nucleotide release factor OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GZ86	1.9e-97	89.86	probable ran guanine nucleotide release factor OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1DAG6	1.6e-96	89.05	probable ran guanine nucleotide release factor OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0KU01	6.1e-96	88.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605010 PE=3 SV=1	[more]
A0A1S3BEU3	1.8e-95	87.14	probable ran guanine nucleotide release factor OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Lcy13g012980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892350.1	3.5e-98	89.52	ran guanine nucleotide release factor [Benincasa hispida]	[more]
XP_023552843.1	7.9e-98	91.30	probable ran guanine nucleotide release factor [Cucurbita pepo subsp. pepo]	[more]
KAG6601426.1	1.3e-97	90.34	putative ran guanine nucleotide release factor, partial [Cucurbita argyrosperma ...	[more]
XP_022987588.1	1.8e-97	90.82	probable ran guanine nucleotide release factor [Cucurbita maxima]	[more]
XP_022957477.1	3.9e-97	89.86	probable ran guanine nucleotide release factor [Cucurbita moschata]	[more]

BLAST of Lcy13g012980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69680.1	1.5e-78	71.90	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 5..207 e-value: 3.5E-44 score: 152.8
None	No IPR available	PANTHER	PTHR15837:SF4	BNAA07G24140D PROTEIN	coord: 5..207
IPR007681	Ran-interacting Mog1 protein	PFAM	PF04603	Mog1	coord: 10..158 e-value: 3.9E-35 score: 121.2
IPR007681	Ran-interacting Mog1 protein	PANTHER	PTHR15837	RAN GUANINE NUCLEOTIDE RELEASE FACTOR	coord: 5..207
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 8..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g012980.1	Lcy13g012980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005085	guanyl-nucleotide exchange factor activity
molecular_function	GO:0031267	small GTPase binding