Lcy13g012240 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g012240
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr13: 16001564 .. 16001722 (-)
RNA-Seq ExpressionLcy13g012240
SyntenyLcy13g012240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAGTTGATGTAATTTTAACGAGCCTTCTGAATTTGTCTAGGAGATTAGGTGGCCGTTATATTAACTTGAAGAATGAAGGTTGTCTTCAAATTCATTATCCTCTAGGTGTTTGGGATGTTGATTCGTTCGCACAACTATTGCGTAAATTTATTAGTTAA

mRNA sequence

ACAGTTGATGTAATTTTAACGAGCCTTCTGAATTTGTCTAGGAGATTAGGTGGCCGTTATATTAACTTGAAGAATGAAGGTTGTCTTCAAATTCATTATCCTCTAGGTGTTTGGGATGTTGATTCGTTCGCACAACTATTGCGTAAATTTATTAGTTAA

Coding sequence (CDS)

ACAGTTGATGTAATTTTAACGAGCCTTCTGAATTTGTCTAGGAGATTAGGTGGCCGTTATATTAACTTGAAGAATGAAGGTTGTCTTCAAATTCATTATCCTCTAGGTGTTTGGGATGTTGATTCGTTCGCACAACTATTGCGTAAATTTATTAGTTAA

Protein sequence

TVDVILTSLLNLSRRLGGRYINLKNEGCLQIHYPLGVWDVDSFAQLLRKFIS
Homology
[Close]
BLAST of Lcy13g012240 vs. ExPASy TrEMBL
Match: A0A0A0KJD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G056070 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 2  VDVILTSLLNLSRRLGGRYINLKNEGCLQIHYPLGVWDVDSFAQLLRKFIS 53
          VDVI TSLLN   RLGG YINL+ +G LQIH P   W+VDSF ++LR+ +S
Sbjct: 4  VDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLS 54

[Close]
BLAST of Lcy13g012240 vs. ExPASy TrEMBL
Match: A0A6J1FQ78 (uncharacterized protein LOC111447242 OS=Cucurbita moschata OX=3662 GN=LOC111447242 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 2   VDVILTSLLNLSRRLGGRYINLKNEGCLQIHYPLGVWDVDSFAQLLRKFIS 53
           VDVI TSLLN   RLGG YINL+ +G LQI+ P   WDVDSF ++LR+ +S
Sbjct: 52  VDVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDSFREMLREVLS 102

[Close]
BLAST of Lcy13g012240 vs. ExPASy TrEMBL
Match: A0A6J1JNI2 (uncharacterized protein LOC111486913 OS=Cucurbita maxima OX=3661 GN=LOC111486913 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.7e-08
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 2   VDVILTSLLNLSRRLGGRYINLKNEGCLQIHYPLGVWDVDSFAQLLRKFIS 53
           VDVI TSLLN   RLGG YINL  +G LQI+ P   WDVDSF ++LR+ +S
Sbjct: 52  VDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFREMLREVLS 102

[Close]
BLAST of Lcy13g012240 vs. NCBI nr
Match: XP_022942054.1 (uncharacterized protein LOC111447242 [Cucurbita moschata])

HSP 1 Score: 67.0 bits (162), Expect = 5.4e-08
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 2   VDVILTSLLNLSRRLGGRYINLKNEGCLQIHYPLGVWDVDSFAQLLRKFIS 53
           VDVI TSLLN   RLGG YINL+ +G LQI+ P   WDVDSF ++LR+ +S
Sbjct: 52  VDVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDSFREMLREVLS 102

[Close]
BLAST of Lcy13g012240 vs. NCBI nr
Match: KAG6600811.1 (hypothetical protein SDJN03_06044, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.0 bits (162), Expect = 5.4e-08
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 2   VDVILTSLLNLSRRLGGRYINLKNEGCLQIHYPLGVWDVDSFAQLLRKFIS 53
           VDVI TSLLN   RLGG YINL+ +G LQI+ P   WDVDSF ++LR+ +S
Sbjct: 52  VDVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDSFREMLREVLS 102

[Close]
BLAST of Lcy13g012240 vs. NCBI nr
Match: XP_022989850.1 (uncharacterized protein LOC111486913 [Cucurbita maxima])

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-07
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 2   VDVILTSLLNLSRRLGGRYINLKNEGCLQIHYPLGVWDVDSFAQLLRKFIS 53
           VDVI TSLLN   RLGG YINL  +G LQI+ P   WDVDSF ++LR+ +S
Sbjct: 52  VDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFREMLREVLS 102

The following BLAST results are available for this feature:
BLAST of Lcy13g012240 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g012240 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJD02.0e-0860.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G056070 PE=4 SV=1[more]
A0A6J1FQ782.6e-0860.78uncharacterized protein LOC111447242 OS=Cucurbita moschata OX=3662 GN=LOC1114472... [more]
A0A6J1JNI27.7e-0860.78uncharacterized protein LOC111486913 OS=Cucurbita maxima OX=3661 GN=LOC111486913... [more]
BLAST of Lcy13g012240 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022942054.15.4e-0860.78uncharacterized protein LOC111447242 [Cucurbita moschata][more]
KAG6600811.15.4e-0860.78hypothetical protein SDJN03_06044, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022989850.11.6e-0760.78uncharacterized protein LOC111486913 [Cucurbita maxima][more]
BLAST of Lcy13g012240 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g012240.1Lcy13g012240.1mRNA