Lcy13g011310 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g011310
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr13: 12858898 .. 12860556 (-)
RNA-Seq ExpressionLcy13g011310
SyntenyLcy13g011310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGTGACACCATTATTTTAATAAAAAAAATCATTTTTTAAATTTTCTAAATAAAAATATATTAAAATAATTAAAATATTATTATTTTATTCTTTTTTTTTTTTAATTCTTTCTCCCCCTCTCTCTTATTCTTCTACTTCTCCATCCTCTTCTTCTCAACTCTTCCTTCTTCTTCAAATCTCCTGGCCACCGGCAACGGCGAGCGGTGGTCACCGGTCGTCGGTCGTCGGAGATTTGAAGAAGAAGGAAGAGTTGAGAGGAAGAGGATGAAGTGAAGTCCCAGTGTTGACCAAAGTGTTCCTAAAAGGGAAGAAGGTGGAAGAACTCATTGACGGCCGTGGAGAATGGAAGGATGGGGTGATTTTAAAGAATTTTTCAGCCTTTGAAGCCGACATTATCCTCAATACTCACATAGGGGGAAAGGATTCAAAGATGAGATCATTTGGAATTGGGAGAAAAAAGGCTCTTTCTCTGTGAAAAGTGTCTACCACCTTGCTGTTCACTTAGCGAACAACCAAGACGCCTCAACTTCCAACTCCTCCTCTCCTGATATATTCTGGAAAAATTTCTGGAGGATCAAAGCTCTCCCTAAGGCCAAACTTTGCTCGTGGAGAATTATTCATGAATCTCTCCCTACCGAAATGAATATAATCGGAAAAGGCATCCAAACTAATCCTCAATGTCTTTTTTGTAGGTCCCACGAGGAATCGGAGAAGCATATTTTCTGGGAGTGCAAGTTCTCTAAGAAGATTTGGGCTCAATTTCTCCCACTAACAAACTCTTTGTTTGTCTTGCACAGGGGAAATTGGACGCCGAAAGACTACTGGGCTTGGATGATCGACTGCCTTCGGAAAAGGACTTGGAGATAGCGACTTTAATCCTATGGAGTATTTGGGAATATAGAAACTCGATAAACCATACAAGTAGCAGATTGAAAATCAATTCTATCTCTAGAAGCATTTATAGCAGATTATCAGATGATCGAGAAGAGAGTTTGAAGAACCTAACCTCCGCGAATTGCACATCCGTTCCAGCGGTGAAGAACCTTTTGAGTCACAAGAGTTGGCAGCCCCCCCCCCCCCTTCAGGAAGCTGGAAACTCAACGTTGATGCATCTTGGAGTGGGAATCAGAATCAGGGTGGTATTGGCTGGATCCTCCGTGACTCTTCAGGGTCTTCGATCTGCCTGGGGTTCAAACGGATTCATAAGAGATGGTCAATCAAGATGCTGGAGCTCAAAGCCATCGTCAAGGGATTGAAGAGTTTACCTAACTCGGGTGTGATAAAAAACCCTCATTGTGCCATTCCAACCGTGATCGAGTCCGACGTCGTATCTGTTGTAAACTTGATTAACGGAGAAGACGAGGACCTCTTGGAGATCTCCTTCTTGGTGGAGGAACTCAACAACATTAAAAATTCCTTCGTGGACATTTCATTCGGTTTTTACCCCATAAATCAAAATGTTGTCACCGATGCCTTGGCGCGCATGACGATTTTCGCCCCTTCTTTTTCTGTTCTGGTTACCTCTTCCATTATGGAAGAGGAAGAGGGTTTTTGGAGATGGCAACCCCCTTTTTTGTATTCAAAGCCTCTCAAAAGAGGTTGGTGTATCTAATTTCCTTTCTCTTTAATGAAGTATTTATTTTCAAAAAATAAAATAA

mRNA sequence

ACGTGACACCATTATTTTAATAAAAAAAATCATTTTTTAAATTTTCTAAATAAAAATATATTAAAATAATTAAAATATTATTATTTTATTCTTTTTTTTTTTTAATTCTTTCTCCCCCTCTCTCTTATTCTTCTACTTCTCCATCCTCTTCTTCTCAACTCTTCCTTCTTCTTCAAATCTCCTGGCCACCGGCAACGGCGAGCGGTGGTCACCGGTCGTCGGTCGTCGGAGATTTGAAGAAGAAGGAAGAGTTGAGAGGAAGAGGATGAAGTGAAGTCCCAGTGTTGACCAAAGTGTTCCTAAAAGGGAAGAAGGTGGAAGAACTCATTGACGGCCGTGGAGAATGGAAGGATGGGGTGATTTTAAAGAATTTTTCAGCCTTTGAAGCCGACATTATCCTCAATACTCACATAGGGGGAAAGGATTCAAAGATGAGATCATTTGGAATTGGGAGAAAAAAGGCTCTTTCTCTGTGAAAAGTGTCTACCACCTTGCTGTTCACTTAGCGAACAACCAAGACGCCTCAACTTCCAACTCCTCCTCTCCTGATATATTCTGGAAAAATTTCTGGAGGATCAAAGCTCTCCCTAAGGCCAAACTTTGCTCGTGGAGAATTATTCATGAATCTCTCCCTACCGAAATGAATATAATCGGAAAAGGCATCCAAACTAATCCTCAATGTCTTTTTTGTAGGTCCCACGAGGAATCGGAGAAGCATATTTTCTGGGAGTGCAAGTTCTCTAAGAAGATTTGGGCTCAATTTCTCCCACTAACAAACTCTTTGTTTGTCTTGCACAGGGGAAATTGGACGCCGAAAGACTACTGGGCTTGGATGATCGACTGCCTTCGGAAAAGGACTTGGAGATAGCGACTTTAATCCTATGGAGTATTTGGGAATATAGAAACTCGATAAACCATACAAGTAGCAGATTGAAAATCAATTCTATCTCTAGAAGCATTTATAGCAGATTATCAGATGATCGAGAAGAGAGTTTGAAGAACCTAACCTCCGCGAATTGCACATCCGTTCCAGCGGTGAAGAACCTTTTGAGTCACAAGAGTTGGCAGCCCCCCCCCCCCCTTCAGGAAGCTGGAAACTCAACGTTGATGCATCTTGGAGTGGGAATCAGAATCAGGGTGGTATTGGCTGGATCCTCCGTGACTCTTCAGGGTCTTCGATCTGCCTGGGGTTCAAACGGATTCATAAGAGATGGTCAATCAAGATGCTGGAGCTCAAAGCCATCGTCAAGGGATTGAAGAGTTTACCTAACTCGGGTGTGATAAAAAACCCTCATTGTGCCATTCCAACCGTGATCGAGTCCGACGTCGTATCTGTTGTAAACTTGATTAACGGAGAAGACGAGGACCTCTTGGAGATCTCCTTCTTGGTGGAGGAACTCAACAACATTAAAAATTCCTTCGTGGACATTTCATTCGGTTTTTACCCCATAAATCAAAATGTTGTCACCGATGCCTTGGCGCGCATGACGATTTTCGCCCCTTCTTTTTCTGTTCTGGTTACCTCTTCCATTATGGAAGAGGAAGAGGGTTTTTGGAGATGGCAACCCCCTTTTTTGTATTCAAAGCCTCTCAAAAGAGGTTGGTGTATCTAATTTCCTTTCTCTTTAATGAAGTATTTATTTTCAAAAAATAAAATAA

Coding sequence (CDS)

ATGCTGGAGCTCAAAGCCATCGTCAAGGGATTGAAGAGTTTACCTAACTCGGGTGTGATAAAAAACCCTCATTGTGCCATTCCAACCGTGATCGAGTCCGACGTCGTATCTGTTGTAAACTTGATTAACGGAGAAGACGAGGACCTCTTGGAGATCTCCTTCTTGGTGGAGGAACTCAACAACATTAAAAATTCCTTCGTGGACATTTCATTCGGTTTTTACCCCATAAATCAAAATGTTGTCACCGATGCCTTGGCGCGCATGACGATTTTCGCCCCTTCTTTTTCTGTTCTGGTTACCTCTTCCATTATGGAAGAGGAAGAGGGTTTTTGGAGATGGCAACCCCCTTTTTTGTATTCAAAGCCTCTCAAAAGAGGTTGGTGTATCTAA

Protein sequence

MLELKAIVKGLKSLPNSGVIKNPHCAIPTVIESDVVSVVNLINGEDEDLLEISFLVEELNNIKNSFVDISFGFYPINQNVVTDALARMTIFAPSFSVLVTSSIMEEEEGFWRWQPPFLYSKPLKRGWCI
Homology
The following BLAST results are available for this feature:
BLAST of Lcy13g011310 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g011310 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g011310 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g011310 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 3..88
e-value: 2.3E-7
score: 30.6
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..91
e-value: 1.6E-5
score: 26.8
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g011310.1Lcy13g011310.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity