Lcy13g010660 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g010660
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Glycerol-3-phosphate dehydrogenase [NAD(+)]
Location	Chr13: 11401712 .. 11403396 (+)
RNA-Seq Expression	Lcy13g010660
Synteny	Lcy13g010660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCGCCATTACTCGACCTTTCTTCCCACAACCCTTTTTTCATCCCCAAGAATTATTCCTTATACCACACATACCCTTCCAAATTAACCATTCCCAGCCTCTGTTGTTCCAATAATCCCACCACTTCCCGTCGCCGGTTCTGCGCCGATGCAACGCCGCCTCCGATTCTTGAAGACGCTGACGCTGTTCTAGATTCTGGCCCTGAAAGAACCCAGAACCGCCGCCGGATTGTTCGACTTGCCTGGGAGAAGTTGGTGCGATGGTCCAGGTCTTGGCGATTCAAGGCCAAGACCGACGTTCTTGAGCGCACGAATAAGGTGGGTTTTAATCTGCTTCTCTTCTTTTTGCGTACTTTTATCTTTTTAGGCCTATTGAAGATGTGGGTTAGTCTTATTGATGTTTGATTTTGCGTGGTTTGATTCTATGATTGCAAGCTGTTTGATAAAATGCCGCAGAGAAGTTCGTTGAAGTATCTAGTTTTTTCTTTATTCATTTTCAATTTGTAAGTGAAGTATGGGAACTTTTAGTTGTTTTTCACTTTCTTGTCACTATAACTCATACTTACTTCACTGTACTGTCTTGTGAGCACTGAGTTGTAATTGTGAACGAATCCCCTTGTATGGCATTGTTTTTCCTCTTTGGACTTGGGGAATTATGACTATTATTGGGTTGGGAAATGATAACCACTAGAAAACGAGTCAATACCATATTACTTGACCTTTGACTTTATGTACCTATAAACTTGTTGCATTCCGTTTACTCTTATTAATTAGTTATTGCACCTTGTCAAAGTTATTTTTCCATTCTTTGCTATATTTGCTATTCGTGTGTGGTGTGTGTGGGGGTAGGGTTGCGGGTGGGGGAGAGGGGGCGTAATTTAAGGTGTGTTGGAAAATGACCTTTGGCTTAGAGACTAAAAGGTTTGGCTGTTTAAGTCTACCATTGTTCTCTGAAATTAATAGTTTATTTGATTATCTAGACATGACGTAATCAAATATTAAATTATAAATGATTATAATCATGTTGCAGTTTATAAAATAGAATCCTGAAGTAGCTTATATGTGAGTATTAATAATATTTTATTGGTAAATGTGGTTGTCCCTTTTTGCTTAGAGATGAGCTTAAAAATTAGTATACTACTCGATGTGTCTTGAACCTAATTAATTATCAGCAAAAGCTTAAACATTTCATTCATCATCAAGGTCTGTGCTAAGCTTGAAAATGTATATATAATATTTTGGGAGATGAATGTCAAACTGAAAGCAATAGAGCCATGGGCAGTTTTACTTACGGATATTTGTTTAAAGTAAATTCTACTTCCTAAATTTCTTTCCTTCTTATGTAATAATAGTTCACTGTCTAAATTTTATCAGGTAGCTGTGCTTGGAGGTGGATCTTTTGGCACAGCGATGGCTGCTCATATTGCTGGTAGAAAGCCCCAATTGGAAGTCAACATGCTTCTCCGGGATCCTCAAGTATGCCAGTCAATTAATGATAGTCACTACAATAGGTAAATTATTCTTACTGCGAGAACTTTTATTTTTCACCTATTTCAGCGTAAATCCATGCAACTCCCAACAAACCCCCTGTACTAGTGGTTTTCTGATGTATTTGGCTGAAGTTCACATAAAAAATAGATATATATGTGAGCTGGTGCAAATGTTTGTGTGGTCTCAGATGA

mRNA sequence

ATGGAGTCGCCATTACTCGACCTTTCTTCCCACAACCCTTTTTTCATCCCCAAGAATTATTCCTTATACCACACATACCCTTCCAAATTAACCATTCCCAGCCTCTGTTGTTCCAATAATCCCACCACTTCCCGTCGCCGGTTCTGCGCCGATGCAACGCCGCCTCCGATTCTTGAAGACGCTGACGCTGTTCTAGATTCTGGCCCTGAAAGAACCCAGAACCGCCGCCGGATTGTTCGACTTGCCTGGGAGAAGTTGGTGCGATGGTCCAGGTCTTGGCGATTCAAGGCCAAGACCGACGTTCTTGAGCGCACGAATAAGGTAGCTGTGCTTGGAGGTGGATCTTTTGGCACAGCGATGGCTGCTCATATTGCTGGTAGAAAGCCCCAATTGGAAGTCAACATGCTTCTCCGGGATCCTCAAGTATGCCAGTCAATTAATGATAGTCACTACAATAGATGA

Coding sequence (CDS)

ATGGAGTCGCCATTACTCGACCTTTCTTCCCACAACCCTTTTTTCATCCCCAAGAATTATTCCTTATACCACACATACCCTTCCAAATTAACCATTCCCAGCCTCTGTTGTTCCAATAATCCCACCACTTCCCGTCGCCGGTTCTGCGCCGATGCAACGCCGCCTCCGATTCTTGAAGACGCTGACGCTGTTCTAGATTCTGGCCCTGAAAGAACCCAGAACCGCCGCCGGATTGTTCGACTTGCCTGGGAGAAGTTGGTGCGATGGTCCAGGTCTTGGCGATTCAAGGCCAAGACCGACGTTCTTGAGCGCACGAATAAGGTAGCTGTGCTTGGAGGTGGATCTTTTGGCACAGCGATGGCTGCTCATATTGCTGGTAGAAAGCCCCAATTGGAAGTCAACATGCTTCTCCGGGATCCTCAAGTATGCCAGTCAATTAATGATAGTCACTACAATAGATGA

Protein sequence

MESPLLDLSSHNPFFIPKNYSLYHTYPSKLTIPSLCCSNNPTTSRRRFCADATPPPILEDADAVLDSGPERTQNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAMAAHIAGRKPQLEVNMLLRDPQVCQSINDSHYNR

Homology

[Close]

BLAST of Lcy13g010660 vs. ExPASy Swiss-Prot
Match: Q949Q0 (Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GLY1 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.1e-30
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 55  PPILEDADAVLDSGP----ERTQNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAV 114
           P ++ +AD++  SGP       +++R++VR+AWEKLVRWSRS R KAKTDVLERT KV V
Sbjct: 35  PNVIPEADSI--SGPPDIINTNRDQRKVVRIAWEKLVRWSRSLRAKAKTDVLERTRKVVV 94

Query: 115 LGGGSFGTAMAAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           LGGGSFGTAMAAH+A RK  LEVNML+RD  VCQSIN++H+N
Sbjct: 95  LGGGSFGTAMAAHVARRKEGLEVNMLVRDSFVCQSINENHHN 134

[Close]

BLAST of Lcy13g010660 vs. ExPASy Swiss-Prot
Match: Q8H2J9 (Glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0229800 PE=2 SV=3)

HSP 1 Score: 116.3 bits (290), Expect = 3.0e-25
Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 73  QNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAMAAHIAGRKPQLE 132
           + RRR+VR AWEKLVRWSRSWR + ++DV+E T KV VLGGGSFGTAMAA +A +K  LE
Sbjct: 75  KERRRVVRKAWEKLVRWSRSWRRRNRSDVVETTRKVVVLGGGSFGTAMAAQVAAKKADLE 134

Query: 133 VNMLLRDPQVCQSINDSHYN 153
           V+MLLRD  VC+SIN SH N
Sbjct: 135 VSMLLRDDLVCRSINHSHIN 154

[Close]

BLAST of Lcy13g010660 vs. ExPASy Swiss-Prot
Match: Q1QUM1 (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) OX=290398 GN=gpsA PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.5e-04
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 107 KVAVLGGGSFGTAMAAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           KVAVLGGGSFGTA+A+  A    +  VN  LRDP + + IN  H N
Sbjct: 7   KVAVLGGGSFGTAIASIAADNGAR--VNQWLRDPALIEQINREHRN 50

[Close]

BLAST of Lcy13g010660 vs. ExPASy Swiss-Prot
Match: P61739 (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough) OX=882 GN=gpsA PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.5e-04
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 107 KVAVLGGGSFGTAMAAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           K+AVLGGGS+GTA+A  +AG+    +V + +RDP V + +N  H N
Sbjct: 2   KIAVLGGGSWGTALAHLLAGKGE--DVRLWVRDPAVVEGVNRDHEN 45

[Close]

BLAST of Lcy13g010660 vs. ExPASy Swiss-Prot
Match: A1V9Y4 (Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) OX=391774 GN=gpsA PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.5e-04
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 107 KVAVLGGGSFGTAMAAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           K+AVLGGGS+GTA+A  +AG+    +V + +RDP V + +N  H N
Sbjct: 2   KIAVLGGGSWGTALAHLLAGKGE--DVRLWVRDPAVVEGVNRDHEN 45

[Close]

BLAST of Lcy13g010660 vs. ExPASy TrEMBL
Match: A0A6J1CYX2 (Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Momordica charantia OX=3673 GN=LOC111015864 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.0e-69
Identity = 131/153 (85.62%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MESPLLDLSSHNPFFIPKNYSLYHTYPSKLTIPSLCCSNNPTTSRRRFCADATPPPILED 60
           ME+PL+DLSSH+PFF PKN+SLYH YPSK+TIP+LCC NNPTTS RRFCAD TPP   ED
Sbjct: 1   METPLMDLSSHSPFFTPKNHSLYHFYPSKITIPTLCCPNNPTTSLRRFCADTTPP---ED 60

Query: 61  ADAVL-DSGPERTQNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTA 120
             A   DS PERTQNRRRIVRLAWEKLVRWSRSWRFKA+TDVLERTNKVAVLGGGSFGTA
Sbjct: 61  IHAAASDSAPERTQNRRRIVRLAWEKLVRWSRSWRFKARTDVLERTNKVAVLGGGSFGTA 120

Query: 121 MAAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           MAAHIAGRKPQLEVNMLLRDPQVCQSIND+HYN
Sbjct: 121 MAAHIAGRKPQLEVNMLLRDPQVCQSINDTHYN 150

[Close]

BLAST of Lcy13g010660 vs. ExPASy TrEMBL
Match: A0A6J1K6S7 (Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Cucurbita maxima OX=3661 GN=LOC111491179 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.3e-68
Identity = 131/152 (86.18%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   MESPLLDLSSHNPFFIPKNYSLYHTYPSKLTIPSLCCSNNPTTSRRRFCADATPPPILED 60
           ME+PLLDLSS N FF PKNYSLY+T PSKLT  SLCC + PTTS RRFCAD +PPPILED
Sbjct: 1   METPLLDLSSRNAFFTPKNYSLYYTKPSKLTNLSLCCPDKPTTSHRRFCADESPPPILED 60

Query: 61  ADAVLDSGPERTQNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM 120
            D VLD   E+T NRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM
Sbjct: 61  TDVVLDLVTEKTPNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM 120

Query: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN
Sbjct: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 152

[Close]

BLAST of Lcy13g010660 vs. ExPASy TrEMBL
Match: A0A6J1FQT6 (Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Cucurbita moschata OX=3662 GN=LOC111447365 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.8e-68
Identity = 131/152 (86.18%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   MESPLLDLSSHNPFFIPKNYSLYHTYPSKLTIPSLCCSNNPTTSRRRFCADATPPPILED 60
           ME+PLLDLSS N FF PKNYSLY+T PSKLT  SLCC + PTTS RRFCAD +PPPILED
Sbjct: 1   METPLLDLSSRNAFFTPKNYSLYYTKPSKLTNFSLCCPDKPTTSHRRFCADESPPPILED 60

Query: 61  ADAVLDSGPERTQNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM 120
            D VLD   E+T NRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM
Sbjct: 61  TDVVLDLVTEKTPNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM 120

Query: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN
Sbjct: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 152

[Close]

BLAST of Lcy13g010660 vs. ExPASy TrEMBL
Match: A0A5D3DRG7 (Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00090 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.8e-64
Identity = 123/152 (80.92%), Postives = 133/152 (87.50%), Query Frame = 0


Query: 1   MESPLLDLSSHNPFFIPKNYSLYHTYPSKLTIPSLCCSNNPTTSRRRFCADATPPPILED 60
           ME+P +DL S+NPF    + S  HTYPS+LTIPSL   N PTTS  RFCA+ TPPPIL+D
Sbjct: 1   METPFMDLPSNNPFSTLNHPSFSHTYPSRLTIPSLSSPNYPTTSPLRFCANTTPPPILQD 60

Query: 61  ADAVLDSGPERTQNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM 120
            DA+LDSGPERTQNRRR+VR+AWEKLVRWSRS RFKAKTDVLERTNKVAVLGGGSFGTAM
Sbjct: 61  TDALLDSGPERTQNRRRVVRIAWEKLVRWSRSLRFKAKTDVLERTNKVAVLGGGSFGTAM 120

Query: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           AAHIAGRKPQLEVNMLLRDPQVCQSIND HYN
Sbjct: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDGHYN 152

[Close]

BLAST of Lcy13g010660 vs. ExPASy TrEMBL
Match: A0A1S3C535 (Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Cucumis melo OX=3656 GN=LOC103496755 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.8e-64
Identity = 123/152 (80.92%), Postives = 133/152 (87.50%), Query Frame = 0


Query: 1   MESPLLDLSSHNPFFIPKNYSLYHTYPSKLTIPSLCCSNNPTTSRRRFCADATPPPILED 60
           ME+P +DL S+NPF    + S  HTYPS+LTIPSL   N PTTS  RFCA+ TPPPIL+D
Sbjct: 42  METPFMDLPSNNPFSTLNHPSFSHTYPSRLTIPSLSSPNYPTTSPLRFCANTTPPPILQD 101

Query: 61  ADAVLDSGPERTQNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM 120
            DA+LDSGPERTQNRRR+VR+AWEKLVRWSRS RFKAKTDVLERTNKVAVLGGGSFGTAM
Sbjct: 102 TDALLDSGPERTQNRRRVVRIAWEKLVRWSRSLRFKAKTDVLERTNKVAVLGGGSFGTAM 161

Query: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           AAHIAGRKPQLEVNMLLRDPQVCQSIND HYN
Sbjct: 162 AAHIAGRKPQLEVNMLLRDPQVCQSINDGHYN 193

[Close]

BLAST of Lcy13g010660 vs. NCBI nr
Match: XP_022146729.1 (glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic [Momordica charantia])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 131/153 (85.62%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MESPLLDLSSHNPFFIPKNYSLYHTYPSKLTIPSLCCSNNPTTSRRRFCADATPPPILED 60
           ME+PL+DLSSH+PFF PKN+SLYH YPSK+TIP+LCC NNPTTS RRFCAD TPP   ED
Sbjct: 1   METPLMDLSSHSPFFTPKNHSLYHFYPSKITIPTLCCPNNPTTSLRRFCADTTPP---ED 60

Query: 61  ADAVL-DSGPERTQNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTA 120
             A   DS PERTQNRRRIVRLAWEKLVRWSRSWRFKA+TDVLERTNKVAVLGGGSFGTA
Sbjct: 61  IHAAASDSAPERTQNRRRIVRLAWEKLVRWSRSWRFKARTDVLERTNKVAVLGGGSFGTA 120

Query: 121 MAAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           MAAHIAGRKPQLEVNMLLRDPQVCQSIND+HYN
Sbjct: 121 MAAHIAGRKPQLEVNMLLRDPQVCQSINDTHYN 150

[Close]

BLAST of Lcy13g010660 vs. NCBI nr
Match: XP_022995739.1 (glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 268.9 bits (686), Expect = 2.8e-68
Identity = 131/152 (86.18%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   MESPLLDLSSHNPFFIPKNYSLYHTYPSKLTIPSLCCSNNPTTSRRRFCADATPPPILED 60
           ME+PLLDLSS N FF PKNYSLY+T PSKLT  SLCC + PTTS RRFCAD +PPPILED
Sbjct: 1   METPLLDLSSRNAFFTPKNYSLYYTKPSKLTNLSLCCPDKPTTSHRRFCADESPPPILED 60

Query: 61  ADAVLDSGPERTQNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM 120
            D VLD   E+T NRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM
Sbjct: 61  TDVVLDLVTEKTPNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM 120

Query: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN
Sbjct: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 152

[Close]

BLAST of Lcy13g010660 vs. NCBI nr
Match: XP_023523837.1 (glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.9 bits (686), Expect = 2.8e-68
Identity = 131/152 (86.18%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   MESPLLDLSSHNPFFIPKNYSLYHTYPSKLTIPSLCCSNNPTTSRRRFCADATPPPILED 60
           ME+PLLDLSS N FF PKNYSLY+T PSKLT  SLCC + PTTS RRFCAD +PPPILED
Sbjct: 1   METPLLDLSSRNAFFTPKNYSLYYTKPSKLTNLSLCCPDKPTTSHRRFCADESPPPILED 60

Query: 61  ADAVLDSGPERTQNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM 120
            D VLD   E+T NRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM
Sbjct: 61  TDVVLDLVTEKTPNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM 120

Query: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN
Sbjct: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 152

[Close]

BLAST of Lcy13g010660 vs. NCBI nr
Match: XP_022942269.1 (glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic [Cucurbita moschata] >KAG6599938.1 Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030617.1 Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.5 bits (685), Expect = 3.6e-68
Identity = 131/152 (86.18%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   MESPLLDLSSHNPFFIPKNYSLYHTYPSKLTIPSLCCSNNPTTSRRRFCADATPPPILED 60
           ME+PLLDLSS N FF PKNYSLY+T PSKLT  SLCC + PTTS RRFCAD +PPPILED
Sbjct: 1   METPLLDLSSRNAFFTPKNYSLYYTKPSKLTNFSLCCPDKPTTSHRRFCADESPPPILED 60

Query: 61  ADAVLDSGPERTQNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM 120
            D VLD   E+T NRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM
Sbjct: 61  TDVVLDLVTEKTPNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM 120

Query: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN
Sbjct: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 152

[Close]

BLAST of Lcy13g010660 vs. NCBI nr
Match: XP_038893106.1 (glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 130/152 (85.53%), Postives = 134/152 (88.16%), Query Frame = 0


Query: 1   MESPLLDLSSHNPFFIPKNYSLYHTYPSKLTIPSLCCSNNPTTSRRRFCADATPPPILED 60
           ME+PLLDL S+N F      S  HTYPS+L IPSLCC NNPTTSRRRFCAD TPPPILED
Sbjct: 1   METPLLDLPSNNLFLTFNISSFSHTYPSRLIIPSLCCPNNPTTSRRRFCADTTPPPILED 60

Query: 61  ADAVLDSGPERTQNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAVLGGGSFGTAM 120
            D VLDSGPER QNRRR+VRLAWEKLVRWSRS RFK KTDVLERTNKVAVLGGGSFGTAM
Sbjct: 61  TDTVLDSGPERIQNRRRVVRLAWEKLVRWSRSLRFKTKTDVLERTNKVAVLGGGSFGTAM 120

Query: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN
Sbjct: 121 AAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 152

[Close]

BLAST of Lcy13g010660 vs. TAIR 10
Match: AT2G40690.1 (NAD-dependent glycerol-3-phosphate dehydrogenase family protein )

HSP 1 Score: 131.3 bits (329), Expect = 6.4e-31
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 55  PPILEDADAVLDSGP----ERTQNRRRIVRLAWEKLVRWSRSWRFKAKTDVLERTNKVAV 114
           P ++ +AD++  SGP       +++R++VR+AWEKLVRWSRS R KAKTDVLERT KV V
Sbjct: 35  PNVIPEADSI--SGPPDIINTNRDQRKVVRIAWEKLVRWSRSLRAKAKTDVLERTRKVVV 94

Query: 115 LGGGSFGTAMAAHIAGRKPQLEVNMLLRDPQVCQSINDSHYN 153
           LGGGSFGTAMAAH+A RK  LEVNML+RD  VCQSIN++H+N
Sbjct: 95  LGGGSFGTAMAAHVARRKEGLEVNMLVRDSFVCQSINENHHN 134

The following BLAST results are available for this feature:

BLAST of Lcy13g010660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q949Q0	9.1e-30	64.71	Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic OS=Arabidopsis thal...	[more]
Q8H2J9	3.0e-25	68.75	Glycerol-3-phosphate dehydrogenase [NAD(+)], chloroplastic OS=Oryza sativa subsp...	[more]
Q1QUM1	6.5e-04	54.35	Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Chromohalobacter salexigens (str...	[more]
P61739	6.5e-04	47.83	Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio vulgaris (strain A...	[more]
A1V9Y4	6.5e-04	47.83	Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio vulgaris subsp. vu...	[more]

BLAST of Lcy13g010660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYX2	6.0e-69	85.62	Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1K6S7	1.3e-68	86.18	Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FQT6	1.8e-68	86.18	Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5D3DRG7	5.8e-64	80.92	Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C535	5.8e-64	80.92	Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Cucumis melo OX=3656 GN=LOC103496...	[more]

BLAST of Lcy13g010660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146729.1	1.2e-68	85.62	glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic [Momordica charanti...	[more]
XP_022995739.1	2.8e-68	86.18	glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic [Cucurbita maxima]	[more]
XP_023523837.1	2.8e-68	86.18	glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic [Cucurbita pepo sub...	[more]
XP_022942269.1	3.6e-68	86.18	glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic [Cucurbita moschata...	[more]
XP_038893106.1	1.8e-67	85.53	glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic isoform X1 [Beninca...	[more]

BLAST of Lcy13g010660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40690.1	6.4e-31	64.71	NAD-dependent glycerol-3-phosphate dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.720		coord: 92..153 e-value: 6.2E-11 score: 44.1
None	No IPR available	PANTHER	PTHR11728:SF1	GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)] 2, CHLOROPLASTIC	coord: 75..152
IPR011128	Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal	PFAM	PF01210	NAD_Gly3P_dh_N	coord: 107..152 e-value: 1.1E-7 score: 32.0
IPR006168	Glycerol-3-phosphate dehydrogenase, NAD-dependent	PANTHER	PTHR11728	GLYCEROL-3-PHOSPHATE DEHYDROGENASE	coord: 75..152
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 105..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g010660.1	Lcy13g010660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0046168	glycerol-3-phosphate catabolic process
biological_process	GO:0045017	glycerolipid biosynthetic process
biological_process	GO:0006116	NADH oxidation
biological_process	GO:0009627	systemic acquired resistance
biological_process	GO:0006072	glycerol-3-phosphate metabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009331	glycerol-3-phosphate dehydrogenase complex
molecular_function	GO:0004367	glycerol-3-phosphate dehydrogenase [NAD+] activity
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor