Lcy13g010460 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g010460
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr13: 11148692 .. 11149339 (-)
RNA-Seq ExpressionLcy13g010460
SyntenyLcy13g010460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCAAAAAAGAAAAAAAAAAAAAAAAATCCCCCACTTTTCTCCTCCTCCTCCATACCCAAAACCTCCATTAACATGGGTCATCCTAAGATCATCAAGATCAAAGCCCTTCTTCTTCTTGCCCTCCTCGTCTTCGTTCTCGCCGCCCAAGTCTGCAGCTCTGCCTGCCGTCCACCGTGCCACGGCGTGGCGTTCGCCGAGGCTCGAGAGCATGAAGAAATGGAAGAGGGATCATTGGATGATGAATCAAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCACTGAAAAAGCTTCCATTTTCAGATCCATATATATATATATTATATATACAGACATATATATTTTATATATACACAGTGTTGGGAGATTTGCAGAGACCTTGGAATAAATCCTTGTATTTTCTCTATCTTTAATCTCTTATTTTCTTCTTCATGATCTTCATTTTTTTGGGGTATTGGTGAGGTTACAGTTGATGTTCTAGTGTAAATTAATAAATGAATACAGTGGTTTATTATATATATATATATCATTGCTTCTAGCTTAAGTGCTTTTTTGGAGGTTCTTTTTTGTTGTGTTCAAGGGAATTTTTGTATGCAATATATGATGATCAATAAAAGCATGCTCT

mRNA sequence

CTCCAAAAAAGAAAAAAAAAAAAAAAAATCCCCCACTTTTCTCCTCCTCCTCCATACCCAAAACCTCCATTAACATGGGTCATCCTAAGATCATCAAGATCAAAGCCCTTCTTCTTCTTGCCCTCCTCGTCTTCGTTCTCGCCGCCCAAGTCTGCAGCTCTGCCTGCCGTCCACCGTGCCACGGCGTGGCGTTCGCCGAGGCTCGAGAGCATGAAGAAATGGAAGAGGGATCATTGGATGATGAATCAAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCACTGAAAAAGCTTCCATTTTCAGATCCATATATATATATATTATATATACAGACATATATATTTTATATATACACAGTGTTGGGAGATTTGCAGAGACCTTGGAATAAATCCTTGTATTTTCTCTATCTTTAATCTCTTATTTTCTTCTTCATGATCTTCATTTTTTTGGGGTATTGGTGAGGTTACAGTTGATGTTCTAGTGTAAATTAATAAATGAATACAGTGGTTTATTATATATATATATATCATTGCTTCTAGCTTAAGTGCTTTTTTGGAGGTTCTTTTTTGTTGTGTTCAAGGGAATTTTTGTATGCAATATATGATGATCAATAAAAGCATGCTCT

Coding sequence (CDS)

ATGGGTCATCCTAAGATCATCAAGATCAAAGCCCTTCTTCTTCTTGCCCTCCTCGTCTTCGTTCTCGCCGCCCAAGTCTGCAGCTCTGCCTGCCGTCCACCGTGCCACGGCGTGGCGTTCGCCGAGGCTCGAGAGCATGAAGAAATGGAAGAGGGATCATTGGATGATGAATCAAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTGTTGGCCACTGA

Protein sequence

MGHPKIIKIKALLLLALLVFVLAAQVCSSACRPPCHGVAFAEAREHEEMEEGSLDDESKDNDPYRMYGDVPSPGVGH
Homology
[Close]
BLAST of Lcy13g010460 vs. ExPASy TrEMBL
Match: A0A0A0KQN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G220900 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.1e-21
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 0 

Query: 1  MGHPKIIK---IKALLLLALLV-FVLAAQVCSSACRPPCHGVAFAEAREHEEMEEGSLDD 60
          MGH KIIK   IK LLLLAL++ FV    VCSSACR PCH VA   A+EHEE+ +GSLDD
Sbjct: 1  MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD 60

Query: 61 ESKDNDPYRMYGDVPSPGVGH 78
          +SKDNDPYRMYGDVPSPGVGH
Sbjct: 61 DSKDNDPYRMYGDVPSPGVGH 81

[Close]
BLAST of Lcy13g010460 vs. NCBI nr
Match: KAG6599948.1 (hypothetical protein SDJN03_05181, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-24
Identity = 62/80 (77.50%), Postives = 72/80 (90.00%), Query Frame = 0 

Query: 1   MGHPKIIKIKALLLLAL--LVFVLAAQVCSSACRPPCHGVAFAEAREH-EEMEEGSLDDE 60
           MGHP II+I+ALLLLAL   VFVLAA+VC++ACRPPC+GVA   A+EH E+MEEG+LDDE
Sbjct: 35  MGHPSIIRIRALLLLALTVFVFVLAARVCNAACRPPCYGVAVTRAQEHDEDMEEGALDDE 94

Query: 61  SKDNDPYRMYGDVPSPGVGH 78
           +KDNDPYRMYGDVPSPGVGH
Sbjct: 95  TKDNDPYRMYGDVPSPGVGH 114

[Close]
BLAST of Lcy13g010460 vs. NCBI nr
Match: KGN50727.1 (hypothetical protein Csa_005780 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 6.4e-21
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 0 

Query: 1  MGHPKIIK---IKALLLLALLV-FVLAAQVCSSACRPPCHGVAFAEAREHEEMEEGSLDD 60
          MGH KIIK   IK LLLLAL++ FV    VCSSACR PCH VA   A+EHEE+ +GSLDD
Sbjct: 1  MGHSKIIKMIRIKNLLLLALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLDD 60

Query: 61 ESKDNDPYRMYGDVPSPGVGH 78
          +SKDNDPYRMYGDVPSPGVGH
Sbjct: 61 DSKDNDPYRMYGDVPSPGVGH 81

The following BLAST results are available for this feature:
BLAST of Lcy13g010460 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g010460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQN43.1e-2172.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G220900 PE=4 SV=1[more]
BLAST of Lcy13g010460 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6599948.11.2e-2477.50hypothetical protein SDJN03_05181, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN50727.16.4e-2172.84hypothetical protein Csa_005780 [Cucumis sativus][more]
BLAST of Lcy13g010460 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g010460.1Lcy13g010460.1mRNA