Lcy13g010000 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g010000
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionWRKY domain-containing protein
LocationChr13: 10487321 .. 10488367 (-)
RNA-Seq ExpressionLcy13g010000
SyntenyLcy13g010000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACCGTCACCGCCGACGGCAGCGTCTCGAACGGGAAGCTCGGTCTCTCACTCTTCACGACGCCGACGATCTCCTTCGATAAGCCGCCGCTGTCGTCGAAGAGAAAGTGCGAAGATAGCTCTCGATTGGCTTGCAAGATCTCTTCGAAGCCCTGCCACTGCGCGAAGCGAAGGTATTGCAAGATCGCTGGAGAGCGCGATGAGGTGTGGGATTTTATCCTCTGTCGGCGGCGGGGAGGAGCTCCGGCGGTAGGAAGGAGAGAAGAAGAGAGGGAAGGGTGGGGGAAAGAGGAGAGAGAGGAAGATGGGAAGAAATTTTGGGGGTGGGGAGAGAGAGAGGAGAGAGAAAAGTTTTTTTTAATAATAATAATAATTATTATTATTATTATTATATTTTTTAATGTTATTATTATTTTAATTAAAAATCAATATTTTATTATTTTAAATTGCCACGTCAGCCCTAGAGGGATTCAATAGAACCATTTTCGAAACAGTAGGGACTTGATTGTCCGATTTTGAAACGTAGGGACCTATTAGAAACTGACTCGAAACATGAGGGACCAAAAAGGTATTTTACCCTTTAACTTTCATATAAATACAATTTTAAATTCTTTGATATTTTATATTTAGATTGAACAATATTAATTACAAAATTAACCATGGAAGAATTATCTACACCTAAATAATATAAGCAAATAATAAAACTTTAAATTTTTATTTTTTTTTATGCTATTAATTTCTCTAAAATAATTTAGGGAAAAATACATTTTTGGTCCTTGAGGTTTGAGTTAGGTTTCAATTTGGTCCCTGAGTTTTCAAACTCGATAGTTTAGTCCATGAGGTTTGGATTTTGTTTCATTTTGGTCCCTCCATCCATTTTTTCATTAATAACTAACGGATTGTTGACGTGACACATATTTTTTATTTAAAAAATAATTTTTTTAATTTTTAAAATAAGAAATAATATTAAATTAATAAACAAATATTTTTCTATTATTTCTCTCTTCTTCTTCAAGTCCAACCACCATCCTCAGCCGTCGGTAA

mRNA sequence

ATGTCCACCGTCACCGCCGACGGCAGCGTCTCGAACGGGAAGCTCGGTCTCTCACTCTTCACGACGCCGACGATCTCCTTCGATAAGCCGCCGCTGTCGTCGAAGAGAAAGTGCGAAGATAGCTCTCGATTGGCTTGCAAGATCTCTTCGAAGCCCTGCCACTGCGCGAAGCGAAGTCCAACCACCATCCTCAGCCGTCGGTAA

Coding sequence (CDS)

ATGTCCACCGTCACCGCCGACGGCAGCGTCTCGAACGGGAAGCTCGGTCTCTCACTCTTCACGACGCCGACGATCTCCTTCGATAAGCCGCCGCTGTCGTCGAAGAGAAAGTGCGAAGATAGCTCTCGATTGGCTTGCAAGATCTCTTCGAAGCCCTGCCACTGCGCGAAGCGAAGTCCAACCACCATCCTCAGCCGTCGGTAA

Protein sequence

MSTVTADGSVSNGKLGLSLFTTPTISFDKPPLSSKRKCEDSSRLACKISSKPCHCAKRSPTTILSRR
Homology
[Close]
BLAST of Lcy13g010000 vs. ExPASy TrEMBL
Match: A0A6J1C2I4 (probable WRKY transcription factor 11 OS=Momordica charantia OX=3673 GN=LOC111006845 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.7e-15
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 0 

Query: 1   MSTVTADGSVSNGKLGLSLFTT----PTISFDKPPLSSKRKCEDSSRLACKI--SSKPCH 59
           MST+T DGSVSNGKL LSLFTT    P IS  KPPLSSKRKC+DSSR ACKI  +SKPCH
Sbjct: 154 MSTITGDGSVSNGKLDLSLFTTPPPPPPISTGKPPLSSKRKCDDSSRFACKIPSNSKPCH 213

[Close]
BLAST of Lcy13g010000 vs. ExPASy TrEMBL
Match: A0A6J1ETL8 (probable WRKY transcription factor 11 OS=Cucurbita moschata OX=3662 GN=LOC111437620 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-14
Identity = 44/62 (70.97%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1   MSTVTADGSVSNGKLGLSLFT----TPTISFDKPPLSSKRKCEDSSRLACKISSKPCHCA 59
           MST+T DGSVSN KLGLSLFT     P +S  KPPLS+KRKC+DSSR  CKI+SK CHCA
Sbjct: 119 MSTITGDGSVSNEKLGLSLFTPPPPPPAVSSGKPPLSAKRKCDDSSRFGCKINSKECHCA 178

[Close]
BLAST of Lcy13g010000 vs. ExPASy TrEMBL
Match: A0A6J1IA54 (probable WRKY transcription factor 11 OS=Cucurbita maxima OX=3661 GN=LOC111473068 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.1e-14
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 0 

Query: 1   MSTVTADGSVSNGKLGLSLFTTP--TISFDKPPLSSKRKCEDSSRLACKISSKPCHCAKR 59
           MST+T DGSVSN KLGLSLFT P   +S  KPPLS+KRKC+DSSR  CKI+SK CHC KR
Sbjct: 119 MSTITGDGSVSNEKLGLSLFTPPPSAVSSGKPPLSAKRKCDDSSRFGCKINSKECHCTKR 178

[Close]
BLAST of Lcy13g010000 vs. ExPASy TrEMBL
Match: A0A5A7TIT1 (Putative WRKY transcription factor 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8680G00010 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 1   MSTVTADGSVSNGKLGLSLFTTPTISFDKPPLSSKRKCEDSSRLACKI-SSKPCHCAKR 59
           +STVT DGSVSNGKL LS++TTP  +  KPPL+ KRKC D S   CK+ +SK CHCAKR
Sbjct: 131 VSTVTGDGSVSNGKLDLSVYTTPPANGGKPPLAMKRKCNDVSGFGCKVPNSKLCHCAKR 189

[Close]
BLAST of Lcy13g010000 vs. ExPASy TrEMBL
Match: A0A5D3E1I0 (Putative WRKY transcription factor 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold59723G00010 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 1   MSTVTADGSVSNGKLGLSLFTTPTISFDKPPLSSKRKCEDSSRLACKI-SSKPCHCAKR 59
           +STVT DGSVSNGKL LS++TTP  +  KPPL+ KRKC D S   CK+ +SK CHCAKR
Sbjct: 130 VSTVTGDGSVSNGKLDLSVYTTPPANGGKPPLAMKRKCNDVSGFGCKVPNSKLCHCAKR 188

[Close]
BLAST of Lcy13g010000 vs. NCBI nr
Match: XP_022134623.1 (probable WRKY transcription factor 11 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 7.7e-15
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 0 

Query: 1   MSTVTADGSVSNGKLGLSLFTT----PTISFDKPPLSSKRKCEDSSRLACKI--SSKPCH 59
           MST+T DGSVSNGKL LSLFTT    P IS  KPPLSSKRKC+DSSR ACKI  +SKPCH
Sbjct: 154 MSTITGDGSVSNGKLDLSLFTTPPPPPPISTGKPPLSSKRKCDDSSRFACKIPSNSKPCH 213

[Close]
BLAST of Lcy13g010000 vs. NCBI nr
Match: XP_023531476.1 (probable WRKY transcription factor 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.4 bits (215), Expect = 5.0e-14
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 1   MSTVTADGSVSNGKLGLSLFT--TPTISFDKPPLSSKRKCEDSSRLACKISSKPCHCAKR 59
           MST+T DGSVSN KLGLSLFT   P +S  KPPLS+KRKC+DSSR  CKI+SK CHCAKR
Sbjct: 124 MSTITGDGSVSNEKLGLSLFTPPPPAVSSGKPPLSAKRKCDDSSRFGCKINSKECHCAKR 183

[Close]
BLAST of Lcy13g010000 vs. NCBI nr
Match: XP_022931442.1 (probable WRKY transcription factor 11 [Cucurbita moschata])

HSP 1 Score: 86.7 bits (213), Expect = 8.5e-14
Identity = 44/62 (70.97%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1   MSTVTADGSVSNGKLGLSLFT----TPTISFDKPPLSSKRKCEDSSRLACKISSKPCHCA 59
           MST+T DGSVSN KLGLSLFT     P +S  KPPLS+KRKC+DSSR  CKI+SK CHCA
Sbjct: 119 MSTITGDGSVSNEKLGLSLFTPPPPPPAVSSGKPPLSAKRKCDDSSRFGCKINSKECHCA 178

[Close]
BLAST of Lcy13g010000 vs. NCBI nr
Match: XP_022974392.1 (probable WRKY transcription factor 11 [Cucurbita maxima])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 0 

Query: 1   MSTVTADGSVSNGKLGLSLFTTP--TISFDKPPLSSKRKCEDSSRLACKISSKPCHCAKR 59
           MST+T DGSVSN KLGLSLFT P   +S  KPPLS+KRKC+DSSR  CKI+SK CHC KR
Sbjct: 119 MSTITGDGSVSNEKLGLSLFTPPPSAVSSGKPPLSAKRKCDDSSRFGCKINSKECHCTKR 178

[Close]
BLAST of Lcy13g010000 vs. NCBI nr
Match: KAG6587721.1 (putative WRKY transcription factor 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.7 bits (208), Expect = 3.2e-13
Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1   MSTVTADGSVSNGKLGLSLFT----TPTISFDKPPLSSKRKCEDSSRLACKISSKPCHCA 59
           MST+T DGSVSN KLGLSLFT     P +S  KPPLS+KRKC+D SR  CKI+SK CHCA
Sbjct: 124 MSTITGDGSVSNEKLGLSLFTPPPPLPAVSSGKPPLSAKRKCDDRSRFGCKINSKECHCA 183

The following BLAST results are available for this feature:
BLAST of Lcy13g010000 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g010000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C2I43.7e-1576.56probable WRKY transcription factor 11 OS=Momordica charantia OX=3673 GN=LOC11100... [more]
A0A6J1ETL84.1e-1470.97probable WRKY transcription factor 11 OS=Cucurbita moschata OX=3662 GN=LOC111437... [more]
A0A6J1IA547.1e-1471.67probable WRKY transcription factor 11 OS=Cucurbita maxima OX=3661 GN=LOC11147306... [more]
A0A5A7TIT11.6e-1064.41Putative WRKY transcription factor 11 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3E1I01.6e-1064.41Putative WRKY transcription factor 11 OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
BLAST of Lcy13g010000 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022134623.17.7e-1576.56probable WRKY transcription factor 11 [Momordica charantia][more]
XP_023531476.15.0e-1473.33probable WRKY transcription factor 11 [Cucurbita pepo subsp. pepo][more]
XP_022931442.18.5e-1470.97probable WRKY transcription factor 11 [Cucurbita moschata][more]
XP_022974392.11.5e-1371.67probable WRKY transcription factor 11 [Cucurbita maxima][more]
KAG6587721.13.2e-1369.35putative WRKY transcription factor 11, partial [Cucurbita argyrosperma subsp. so... [more]
BLAST of Lcy13g010000 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g010000.1Lcy13g010000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding