Lcy13g009890 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g009890
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RING-type E3 ubiquitin transferase
Location	Chr13: 10336993 .. 10337825 (-)
RNA-Seq Expression	Lcy13g009890
Synteny	Lcy13g009890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAATACCTTTCCCTTTCTTCGTTCTTCTTCTTTCTTTTTCCTCCGCCGCCACCATTCTCCGGCCGCCGCATCCGCCGCCGCAGGGATTCTTCGGCGACCGTCTGTTTGATGATTCGCAGGTTGAAATGGCGACATCCCAAGTCCCCCCGTCCGTCAACTGGCACTTCACGGAGCTCGACGACCGGATCTTCCAAATCCGTGGCCGGACTTTCTTCTTCGTCGCCGTTCTATTCGCCGTCATCCTTCTCGTGACTTTTATTTTCCTTTACGCCCGATGGGTTTTCCGATTTCACCGCCTCACGGCCTTCCCCACCGCCGTCCCCGGCGTCCGGCCGTCCAGGTCGCCGCCGCAGCAGGGGCTCGACCAGGCGGCGATTAACTGCCTGCCGATAACTTTACACAAGGCGGCGCCGGCAGAGGATCCGGGCGCCGCCGCCGCTGCGGTGGAGTGCTGTATTTGTTTGGGCGTGTTTGAGGATGGGGAGAAGGTCAAGATTCTGCCGCTGTGCCGCCATTGTTACCACTCCGAGTGCGTCGACCAGTGGCTCCGATCGCAGTCGAGCTGCCCGCTTTGTCGTGTCTCTCTCAATGTCGATACCTCAAACCGTCTTCAAATGGTTTGAAACTACCTCTCGAAATTCTGTTCTGATACTATGTTAAATTACAATAGAACACAAAAAGCTTGAGCTGATAGGTACGGTAAATTTAATGTTTTATTCATATTCTTACCATTTTCCCTCGTGTGAATTTGGAAATTAGCTCGAGTTCAGCTGCAATAGTAATGAGAATGGAAATAACACTAATGGGTTCGAATGTAAATTTAATTCTTC

mRNA sequence

CCCAAATACCTTTCCCTTTCTTCGTTCTTCTTCTTTCTTTTTCCTCCGCCGCCACCATTCTCCGGCCGCCGCATCCGCCGCCGCAGGGATTCTTCGGCGACCGTCTGTTTGATGATTCGCAGGTTGAAATGGCGACATCCCAAGTCCCCCCGTCCGTCAACTGGCACTTCACGGAGCTCGACGACCGGATCTTCCAAATCCGTGGCCGGACTTTCTTCTTCGTCGCCGTTCTATTCGCCGTCATCCTTCTCGTGACTTTTATTTTCCTTTACGCCCGATGGGTTTTCCGATTTCACCGCCTCACGGCCTTCCCCACCGCCGTCCCCGGCGTCCGGCCGTCCAGGTCGCCGCCGCAGCAGGGGCTCGACCAGGCGGCGATTAACTGCCTGCCGATAACTTTACACAAGGCGGCGCCGGCAGAGGATCCGGGCGCCGCCGCCGCTGCGGTGGAGTGCTGTATTTGTTTGGGCGTGTTTGAGGATGGGGAGAAGGTCAAGATTCTGCCGCTGTGCCGCCATTGTTACCACTCCGAGTGCGTCGACCAGTGGCTCCGATCGCAGTCGAGCTGCCCGCTTTGTCGTGTCTCTCTCAATGTCGATACCTCAAACCGTCTTCAAATGGTTTGAAACTACCTCTCGAAATTCTGTTCTGATACTATGTTAAATTACAATAGAACACAAAAAGCTTGAGCTGATAGGTACGGTAAATTTAATGTTTTATTCATATTCTTACCATTTTCCCTCGTGTGAATTTGGAAATTAGCTCGAGTTCAGCTGCAATAGTAATGAGAATGGAAATAACACTAATGGGTTCGAATGTAAATTTAATTCTTC

Coding sequence (CDS)

ATGGCGACATCCCAAGTCCCCCCGTCCGTCAACTGGCACTTCACGGAGCTCGACGACCGGATCTTCCAAATCCGTGGCCGGACTTTCTTCTTCGTCGCCGTTCTATTCGCCGTCATCCTTCTCGTGACTTTTATTTTCCTTTACGCCCGATGGGTTTTCCGATTTCACCGCCTCACGGCCTTCCCCACCGCCGTCCCCGGCGTCCGGCCGTCCAGGTCGCCGCCGCAGCAGGGGCTCGACCAGGCGGCGATTAACTGCCTGCCGATAACTTTACACAAGGCGGCGCCGGCAGAGGATCCGGGCGCCGCCGCCGCTGCGGTGGAGTGCTGTATTTGTTTGGGCGTGTTTGAGGATGGGGAGAAGGTCAAGATTCTGCCGCTGTGCCGCCATTGTTACCACTCCGAGTGCGTCGACCAGTGGCTCCGATCGCAGTCGAGCTGCCCGCTTTGTCGTGTCTCTCTCAATGTCGATACCTCAAACCGTCTTCAAATGGTTTGA

Protein sequence

MATSQVPPSVNWHFTELDDRIFQIRGRTFFFVAVLFAVILLVTFIFLYARWVFRFHRLTAFPTAVPGVRPSRSPPQQGLDQAAINCLPITLHKAAPAEDPGAAAAAVECCICLGVFEDGEKVKILPLCRHCYHSECVDQWLRSQSSCPLCRVSLNVDTSNRLQMV

Homology

[Close]

BLAST of Lcy13g009890 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.7e-29
Identity = 73/155 (47.10%), Postives = 92/155 (59.35%), Query Frame = 0


Query: 12  WHFTELDDRIFQIRGRTFFFVAVLFAVILLVTFIFLYARWVFRFHRLTAFPTAVPGVRPS 71
           WH  + DDR FQI GRT FF   LF+V+L    + LY       HR    P     +  S
Sbjct: 16  WHENQYDDRNFQIHGRTLFFALALFSVVLFFALLTLY------IHR-NCLPRDSINLHAS 75

Query: 72  RSPPQ------QGLDQAAINCLPITLHKAAPAEDPGAAAAAVECCICLGVFEDGEKVKIL 131
            SP +       GLD A I  LP+ L +   AE+        ECCICLG FE+GEK+K+L
Sbjct: 76  -SPDRLTRCRSGGLDPAEIRSLPVVLCRRERAEE----EEEKECCICLGGFEEGEKMKVL 135

Query: 132 PLCRHCYHSECVDQWLRSQSSCPLCRVSLNVDTSN 161
           P C HCYH ECVD+WL+++SSCPLCRVS+ VD+S+
Sbjct: 136 PPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]

BLAST of Lcy13g009890 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.5e-17
Identity = 45/121 (37.19%), Postives = 70/121 (57.85%), Query Frame = 0


Query: 32  VAVLFAVILLVTFIFLYARWVFRFHRLTAFPTAVPGVRP-SRSPPQQGLDQAAINCLPIT 91
           V VLF  ++++     YARW+FR H           +R  S SP  Q LDQA ++ +PI 
Sbjct: 33  VIVLFVAVIMILCFHSYARWLFRRHNRRIRRRIRSHLRTLSASPRDQALDQAVLDKIPIF 92

Query: 92  LHKAAPAEDPGAAAAAVECCICLGVFEDGEKVKILPLCRHCYHSECVDQWLRSQSSCPLC 151
           ++    +++P       EC +CL  FE+ ++ ++LP C H +H +C+D W RS+S+CPLC
Sbjct: 93  VYS---SKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLC 150

[Close]

BLAST of Lcy13g009890 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-16
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 0


Query: 32  VAVLFAVILLVTFIFLYARWVF------------RFHRLT-AFPTAVPGVRPSRSPPQQG 91
           + +LF V++L+ F+ LYARW              R  R T  F TA P    +     +G
Sbjct: 35  IVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRG 94

Query: 92  LDQAAINCLPITLHKAAPAEDPGAAAAAVECCICLGVFEDGEKVKILPLCRHCYHSECVD 151
           LD   I  LP+        +DP      +EC +CL  FE+ E  ++LP C+H +H +C+D
Sbjct: 95  LDPNVIKSLPVFTFSDETHKDP------IECAVCLSEFEESETGRVLPNCQHTFHVDCID 154

[Close]

BLAST of Lcy13g009890 vs. ExPASy Swiss-Prot
Match: Q67YI6 (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 78  GLDQAAINCLPITLHKAA-----PAEDPGAAAAAVECCICLGVFEDGEKVKILPLCRHCY 137
           GLD + I  LP+ L+ AA     PA    +AA   +C +CL  FE+G+ V+ LPLC H +
Sbjct: 120 GLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAF 179

Query: 138 HSECVDQWLRSQSSCPLCRVSL 155
           H EC+D+WLRS  +CPLCR ++
Sbjct: 180 HLECIDEWLRSHPNCPLCRTAI 201

[Close]

BLAST of Lcy13g009890 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 75  PQQGLDQAAINCLPITLHKAAPAEDPGAA--AAAVECCICLGVFEDGEKVKILPLCRHCY 134
           P +GL + A+  LP +   AA +    AA    + EC ICL  F DGE++++LPLC H +
Sbjct: 66  PNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSF 125

Query: 135 HSECVDQWLRSQSSCPLCR 152
           H EC+D+WL S+SSCP CR
Sbjct: 126 HVECIDKWLVSRSSCPSCR 144

[Close]

BLAST of Lcy13g009890 vs. ExPASy TrEMBL
Match: A0A6J1K4V5 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111491716 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 134/169 (79.29%), Postives = 141/169 (83.43%), Query Frame = 0


Query: 1   MATSQVPPSVNWHFTELDDRIFQIRGRTFFFVAVLFAVILLVTFIFLYARWVFRFHRLTA 60
           MAT Q PPSV+WHFTELDDRIFQIRGRT FF+AVLFAVILLVTFIFLYARWV R+H L  
Sbjct: 47  MATLQAPPSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMT 106

Query: 61  FPTAVPGVRPSRSPPQQGLDQAAINCLPITLHKAAPAEDPGA---AAAAVECCICLGVFE 120
           F TAVPGVR SRSPPQQGLDQAAINC PITL+K A A +  A   AA A ECCICLGVFE
Sbjct: 107 FSTAVPGVRSSRSPPQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFE 166

Query: 121 DGEKVKILPLCRHCYHSECVDQWLRSQSSCPLCRVSLN-VDTSNRLQMV 166
           DGEKVKIL LC HC+HSECVDQWLR QSSCPLCR+SL   D SN LQMV
Sbjct: 167 DGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQMV 215

[Close]

BLAST of Lcy13g009890 vs. ExPASy TrEMBL
Match: A0A6J1FWS0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111447649 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.6e-67
Identity = 132/166 (79.52%), Postives = 141/166 (84.94%), Query Frame = 0


Query: 1   MATSQVPPSVNWHFTELDDRIFQIRGRTFFFVAVLFAVILLVTFIFLYARWVFRFHRLTA 60
           MAT Q PPSV+WHFTELDDRIFQIRGRTFFF+AVLFAVILLVTFIFLYARWV R+H LT 
Sbjct: 1   MATLQAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTT 60

Query: 61  FPTAVPGVRPSRSPPQQGLDQAAINCLPITLHKAAPAEDPGAAAAAVECCICLGVFEDGE 120
           F  +VPGVR SRSPPQQGLDQA INC  ITL+KA  AE+  AAA A ECCICLGVFEDGE
Sbjct: 61  FSASVPGVRSSRSPPQQGLDQATINCQSITLYKA--AEEVDAAATAAECCICLGVFEDGE 120

Query: 121 KVKILPLCRHCYHSECVDQWLRSQSSCPLCRVSLN-VDTSNRLQMV 166
           KVKIL LC HC+HSECVDQWLR QSSCPLCR+SL   D S+ LQMV
Sbjct: 121 KVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSSNLQMV 164

[Close]

BLAST of Lcy13g009890 vs. ExPASy TrEMBL
Match: A0A5A7T2R0 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00210 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.2e-64
Identity = 131/168 (77.98%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 1   MATSQVPPSVNWHFTELDDRIFQIRGRTFFFVAVLFAVILLVTFIFLYARWVFRFHRLTA 60
           MATSQVPPSV WHFTELDDR+FQIRGRTFFFVAVLFAVILLVTFIFLYARWV RFH+LT 
Sbjct: 1   MATSQVPPSVPWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTT 60

Query: 61  FPTAVPGVRPSRSPP-QQGLDQAAINCLPITLHKAAPAED--PGAAAAAVECCICLGVFE 120
           F  ++P  R  RSPP QQGL   AIN LPITL+KA  AE+  P AA+ A EC ICLGVFE
Sbjct: 61  FSASLPVRRQPRSPPQQQGLGATAINSLPITLYKAPAAEEDPPAAASDAGECSICLGVFE 120

Query: 121 DGEKVKILPLCRHCYHSECVDQWLRSQSSCPLCRVSLNVDTSNRLQMV 166
           DGEKVKILP CRHCYHSECVD+WLRS SSCPLCRVSL +D SN L+MV
Sbjct: 121 DGEKVKILPPCRHCYHSECVDRWLRSHSSCPLCRVSLCIDPSNNLEMV 168

[Close]

BLAST of Lcy13g009890 vs. ExPASy TrEMBL
Match: A0A1S4E052 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103495122 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.2e-64
Identity = 131/168 (77.98%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 1   MATSQVPPSVNWHFTELDDRIFQIRGRTFFFVAVLFAVILLVTFIFLYARWVFRFHRLTA 60
           MATSQVPPSV WHFTELDDR+FQIRGRTFFFVAVLFAVILLVTFIFLYARWV RFH+LT 
Sbjct: 1   MATSQVPPSVPWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTT 60

Query: 61  FPTAVPGVRPSRSPP-QQGLDQAAINCLPITLHKAAPAED--PGAAAAAVECCICLGVFE 120
           F  ++P  R  RSPP QQGL   AIN LPITL+KA  AE+  P AA+ A EC ICLGVFE
Sbjct: 61  FSASLPVRRQPRSPPQQQGLGATAINSLPITLYKAPAAEEDPPAAASDAGECSICLGVFE 120

Query: 121 DGEKVKILPLCRHCYHSECVDQWLRSQSSCPLCRVSLNVDTSNRLQMV 166
           DGEKVKILP CRHCYHSECVD+WLRS SSCPLCRVSL +D SN L+MV
Sbjct: 121 DGEKVKILPPCRHCYHSECVDRWLRSHSSCPLCRVSLCIDPSNNLEMV 168

[Close]

BLAST of Lcy13g009890 vs. ExPASy TrEMBL
Match: A0A0A0KLZ2 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G210015 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.9e-62
Identity = 129/168 (76.79%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MATSQVPPSVNWHFTELDDRIFQIRGRTFFFVAVLFAVILLVTFIFLYARWVFRFHRLTA 60
           MATSQVPPSV WHFTELDDR+FQIRGRTFFFVAVLFAVILLVTFIFLYARWV RFH+LT 
Sbjct: 1   MATSQVPPSVPWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTT 60

Query: 61  FPTAVPGVRPSRSPPQQGLDQAAINCLPITLHK--AAPAEDPGAAA-AAVECCICLGVFE 120
           F   +P  R   SPPQQGL    I  LPITL+K  AA  + PGAAA  A EC ICLGVFE
Sbjct: 61  FSAPLPVHRLPSSPPQQGLGATTIISLPITLYKPPAAKEDAPGAAANDAGECSICLGVFE 120

Query: 121 DGEKVKILPLCRHCYHSECVDQWLRSQSSCPLCRVSLNVDTSNRLQMV 166
           DGEKVKILP CRHCYHSECVD+WLRS SSCPLCRVSL +D SN L+MV
Sbjct: 121 DGEKVKILPPCRHCYHSECVDRWLRSHSSCPLCRVSLCIDPSNNLEMV 168

[Close]

BLAST of Lcy13g009890 vs. NCBI nr
Match: XP_038892868.1 (RING-H2 finger protein ATL66-like [Benincasa hispida])

HSP 1 Score: 284.6 bits (727), Expect = 5.3e-73
Identity = 142/167 (85.03%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 1   MATSQVPPSVNWHFTELDDRIFQIRGRTFFFVAVLFAVILLVTFIFLYARWVFRFHRLTA 60
           MATSQVPPSV WHFTELDDR+FQIRGRTFFFVAVLFA+ILLVTFIFLYARWV RFH+LT 
Sbjct: 1   MATSQVPPSVTWHFTELDDRLFQIRGRTFFFVAVLFAIILLVTFIFLYARWVCRFHQLTT 60

Query: 61  FPTAVPGVRPSRSPPQQGLDQAAINCLPITLHKAAPA-EDPGA-AAAAVECCICLGVFED 120
           FP AVPG RP RSPPQQGL+  AINCLPI+L+KA PA EDP A  AAA EC ICLGVFED
Sbjct: 61  FPAAVPGGRPPRSPPQQGLNPTAINCLPISLYKAPPAEEDPRATVAAAGECSICLGVFED 120

Query: 121 GEKVKILPLCRHCYHSECVDQWLRSQSSCPLCRVSLNVDTSNRLQMV 166
           GEKVKILPLCRHCYHSECVD+WLRSQSSCPLCRVSL +DTSN LQMV
Sbjct: 121 GEKVKILPLCRHCYHSECVDRWLRSQSSCPLCRVSLCIDTSNNLQMV 167

[Close]

BLAST of Lcy13g009890 vs. NCBI nr
Match: KAG6599982.1 (RING-H2 finger protein ATL66, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269.2 bits (687), Expect = 2.3e-68
Identity = 134/166 (80.72%), Postives = 142/166 (85.54%), Query Frame = 0


Query: 1   MATSQVPPSVNWHFTELDDRIFQIRGRTFFFVAVLFAVILLVTFIFLYARWVFRFHRLTA 60
           MAT Q PPSV+WHFTELDDRIFQIRGRTFFF+AVLFAVILLVTFIFLYARWV R+H LT 
Sbjct: 1   MATLQAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTT 60

Query: 61  FPTAVPGVRPSRSPPQQGLDQAAINCLPITLHKAAPAEDPGAAAAAVECCICLGVFEDGE 120
           FP +VPGVR SRSPPQQGLDQA INC  ITL+KA  AE+  AAA A ECCICLGVFEDGE
Sbjct: 61  FPASVPGVRSSRSPPQQGLDQATINCQSITLYKA--AEEVDAAATAAECCICLGVFEDGE 120

Query: 121 KVKILPLCRHCYHSECVDQWLRSQSSCPLCRVSLN-VDTSNRLQMV 166
           KVKIL LC HC+HSECVDQWLR QSSCPLCR+SL   D SN LQMV
Sbjct: 121 KVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQMV 164

[Close]

BLAST of Lcy13g009890 vs. NCBI nr
Match: XP_023511628.1 (RING-H2 finger protein ATL66-like [Cucurbita pepo subsp. pepo] >XP_023511760.1 RING-H2 finger protein ATL66-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.2 bits (679), Expect = 1.9e-67
Identity = 133/166 (80.12%), Postives = 141/166 (84.94%), Query Frame = 0


Query: 1   MATSQVPPSVNWHFTELDDRIFQIRGRTFFFVAVLFAVILLVTFIFLYARWVFRFHRLTA 60
           MAT Q PPSV+WHFTELDDRIFQIRGRTFFF+AVLFAVILLVTFIFLYARWV R+H LT 
Sbjct: 1   MATLQAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTT 60

Query: 61  FPTAVPGVRPSRSPPQQGLDQAAINCLPITLHKAAPAEDPGAAAAAVECCICLGVFEDGE 120
           F  +VPGVR SRSPPQQGLDQA INC  ITL+KA  AE+  AAA A ECCICLGVFEDGE
Sbjct: 61  FSASVPGVRSSRSPPQQGLDQATINCQSITLYKA--AEEVDAAATAAECCICLGVFEDGE 120

Query: 121 KVKILPLCRHCYHSECVDQWLRSQSSCPLCRVSLN-VDTSNRLQMV 166
           KVKIL LC HC+HSECVDQWLR QSSCPLCR+SL   D SN LQMV
Sbjct: 121 KVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQMV 164

[Close]

BLAST of Lcy13g009890 vs. NCBI nr
Match: XP_022996486.1 (RING-H2 finger protein ATL66 [Cucurbita maxima])

HSP 1 Score: 265.8 bits (678), Expect = 2.5e-67
Identity = 134/169 (79.29%), Postives = 141/169 (83.43%), Query Frame = 0


Query: 1   MATSQVPPSVNWHFTELDDRIFQIRGRTFFFVAVLFAVILLVTFIFLYARWVFRFHRLTA 60
           MAT Q PPSV+WHFTELDDRIFQIRGRT FF+AVLFAVILLVTFIFLYARWV R+H L  
Sbjct: 47  MATLQAPPSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMT 106

Query: 61  FPTAVPGVRPSRSPPQQGLDQAAINCLPITLHKAAPAEDPGA---AAAAVECCICLGVFE 120
           F TAVPGVR SRSPPQQGLDQAAINC PITL+K A A +  A   AA A ECCICLGVFE
Sbjct: 107 FSTAVPGVRSSRSPPQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFE 166

Query: 121 DGEKVKILPLCRHCYHSECVDQWLRSQSSCPLCRVSLN-VDTSNRLQMV 166
           DGEKVKIL LC HC+HSECVDQWLR QSSCPLCR+SL   D SN LQMV
Sbjct: 167 DGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQMV 215

[Close]

BLAST of Lcy13g009890 vs. NCBI nr
Match: XP_022942690.1 (RING-H2 finger protein ATL66 [Cucurbita moschata])

HSP 1 Score: 264.2 bits (674), Expect = 7.4e-67
Identity = 132/166 (79.52%), Postives = 141/166 (84.94%), Query Frame = 0


Query: 1   MATSQVPPSVNWHFTELDDRIFQIRGRTFFFVAVLFAVILLVTFIFLYARWVFRFHRLTA 60
           MAT Q PPSV+WHFTELDDRIFQIRGRTFFF+AVLFAVILLVTFIFLYARWV R+H LT 
Sbjct: 1   MATLQAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTT 60

Query: 61  FPTAVPGVRPSRSPPQQGLDQAAINCLPITLHKAAPAEDPGAAAAAVECCICLGVFEDGE 120
           F  +VPGVR SRSPPQQGLDQA INC  ITL+KA  AE+  AAA A ECCICLGVFEDGE
Sbjct: 61  FSASVPGVRSSRSPPQQGLDQATINCQSITLYKA--AEEVDAAATAAECCICLGVFEDGE 120

Query: 121 KVKILPLCRHCYHSECVDQWLRSQSSCPLCRVSLN-VDTSNRLQMV 166
           KVKIL LC HC+HSECVDQWLR QSSCPLCR+SL   D S+ LQMV
Sbjct: 121 KVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSSNLQMV 164

[Close]

BLAST of Lcy13g009890 vs. TAIR 10
Match: AT3G11110.1 (RING/U-box superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.6e-30
Identity = 73/155 (47.10%), Postives = 92/155 (59.35%), Query Frame = 0


Query: 12  WHFTELDDRIFQIRGRTFFFVAVLFAVILLVTFIFLYARWVFRFHRLTAFPTAVPGVRPS 71
           WH  + DDR FQI GRT FF   LF+V+L    + LY       HR    P     +  S
Sbjct: 16  WHENQYDDRNFQIHGRTLFFALALFSVVLFFALLTLY------IHR-NCLPRDSINLHAS 75

Query: 72  RSPPQ------QGLDQAAINCLPITLHKAAPAEDPGAAAAAVECCICLGVFEDGEKVKIL 131
            SP +       GLD A I  LP+ L +   AE+        ECCICLG FE+GEK+K+L
Sbjct: 76  -SPDRLTRCRSGGLDPAEIRSLPVVLCRRERAEE----EEEKECCICLGGFEEGEKMKVL 135

Query: 132 PLCRHCYHSECVDQWLRSQSSCPLCRVSLNVDTSN 161
           P C HCYH ECVD+WL+++SSCPLCRVS+ VD+S+
Sbjct: 136 PPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]

BLAST of Lcy13g009890 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein )

HSP 1 Score: 88.2 bits (217), Expect = 6.7e-18
Identity = 45/121 (37.19%), Postives = 70/121 (57.85%), Query Frame = 0


Query: 32  VAVLFAVILLVTFIFLYARWVFRFHRLTAFPTAVPGVRP-SRSPPQQGLDQAAINCLPIT 91
           V VLF  ++++     YARW+FR H           +R  S SP  Q LDQA ++ +PI 
Sbjct: 33  VIVLFVAVIMILCFHSYARWLFRRHNRRIRRRIRSHLRTLSASPRDQALDQAVLDKIPIF 92

Query: 92  LHKAAPAEDPGAAAAAVECCICLGVFEDGEKVKILPLCRHCYHSECVDQWLRSQSSCPLC 151
           ++    +++P       EC +CL  FE+ ++ ++LP C H +H +C+D W RS+S+CPLC
Sbjct: 93  VYS---SKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLC 150

[Close]

BLAST of Lcy13g009890 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-17
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 0


Query: 32  VAVLFAVILLVTFIFLYARWVF------------RFHRLT-AFPTAVPGVRPSRSPPQQG 91
           + +LF V++L+ F+ LYARW              R  R T  F TA P    +     +G
Sbjct: 35  IVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRG 94

Query: 92  LDQAAINCLPITLHKAAPAEDPGAAAAAVECCICLGVFEDGEKVKILPLCRHCYHSECVD 151
           LD   I  LP+        +DP      +EC +CL  FE+ E  ++LP C+H +H +C+D
Sbjct: 95  LDPNVIKSLPVFTFSDETHKDP------IECAVCLSEFEESETGRVLPNCQHTFHVDCID 154

[Close]

BLAST of Lcy13g009890 vs. TAIR 10
Match: AT3G18930.1 (RING/U-box superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 9.7e-17
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 78  GLDQAAINCLPITLHKAA-----PAEDPGAAAAAVECCICLGVFEDGEKVKILPLCRHCY 137
           GLD + I  LP+ L+ AA     PA    +AA   +C +CL  FE+G+ V+ LPLC H +
Sbjct: 120 GLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAF 179

Query: 138 HSECVDQWLRSQSSCPLCRVSL 155
           H EC+D+WLRS  +CPLCR ++
Sbjct: 180 HLECIDEWLRSHPNCPLCRTAI 201

[Close]

BLAST of Lcy13g009890 vs. TAIR 10
Match: AT3G18930.2 (RING/U-box superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 9.7e-17
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 78  GLDQAAINCLPITLHKAA-----PAEDPGAAAAAVECCICLGVFEDGEKVKILPLCRHCY 137
           GLD + I  LP+ L+ AA     PA    +AA   +C +CL  FE+G+ V+ LPLC H +
Sbjct: 120 GLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAF 179

Query: 138 HSECVDQWLRSQSSCPLCRVSL 155
           H EC+D+WLRS  +CPLCR ++
Sbjct: 180 HLECIDEWLRSHPNCPLCRTAI 201

The following BLAST results are available for this feature:

BLAST of Lcy13g009890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRM0	3.7e-29	47.10	RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1	[more]
O22255	9.5e-17	37.19	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1	[more]
Q8L9T5	2.8e-16	35.34	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
Q67YI6	1.4e-15	46.34	RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2	[more]
O22755	1.5e-14	46.84	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]

BLAST of Lcy13g009890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K4V5	1.2e-67	79.29	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111491716 P...	[more]
A0A6J1FWS0	3.6e-67	79.52	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111447649...	[more]
A0A5A7T2R0	2.2e-64	77.98	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A1S4E052	2.2e-64	77.98	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103495122 PE=3 ...	[more]
A0A0A0KLZ2	5.9e-62	76.79	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G210015 PE...	[more]

BLAST of Lcy13g009890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892868.1	5.3e-73	85.03	RING-H2 finger protein ATL66-like [Benincasa hispida]	[more]
KAG6599982.1	2.3e-68	80.72	RING-H2 finger protein ATL66, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023511628.1	1.9e-67	80.12	RING-H2 finger protein ATL66-like [Cucurbita pepo subsp. pepo] >XP_023511760.1 R...	[more]
XP_022996486.1	2.5e-67	79.29	RING-H2 finger protein ATL66 [Cucurbita maxima]	[more]
XP_022942690.1	7.4e-67	79.52	RING-H2 finger protein ATL66 [Cucurbita moschata]	[more]

BLAST of Lcy13g009890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11110.1	2.6e-30	47.10	RING/U-box superfamily protein	[more]
AT2G47560.1	6.7e-18	37.19	RING/U-box superfamily protein	[more]
AT3G16720.1	2.0e-17	35.34	TOXICOS EN LEVADURA 2	[more]
AT3G18930.1	9.7e-17	46.34	RING/U-box superfamily protein	[more]
AT3G18930.2	9.7e-17	46.34	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 109..150 e-value: 5.6E-5 score: 32.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 108..151 e-value: 5.7E-13 score: 49.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 109..151 score: 11.722122
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 69..156 e-value: 1.2E-19 score: 71.8
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 4..160
None	No IPR available	PANTHER	PTHR45676:SF41	RING-H2 FINGER PROTEIN ATL66	coord: 4..160
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 108..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g009890.1	Lcy13g009890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome