Lcy13g009720 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g009720
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein EARLY FLOWERING 4-like
Location	Chr13: 9981420 .. 9981806 (+)
RNA-Seq Expression	Lcy13g009720
Synteny	Lcy13g009720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACAACCCCCGCCGCAAGTCCAAAACAAAGCCGTCGGCAACCACCACCACCACCACCACAACCACCACCAGCGACGACGGCCAGCACGACGGCTTCCCTGACGAATGCGACGCCGAGGTTTGGGCCTCCTTCGACCAGACCTTCCGGCAGGTCCAGTCGGTGCTGGACCGAAACAGAGTACTGATTCAACAGGTGAACGAGAATCATCAGTCTCGAATTTCCAGCAACATGGTGGACAACGTGGCTCTGATCCAAGAACTCAATGGAAACATCTCAAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGATTTCTCCACTGTGTTCAATAACAACAAACCCAGAAATGGCAAAAGAGGCAGCAGCAACCAAGATGCTTAA

mRNA sequence

ATGGCCGACAACCCCCGCCGCAAGTCCAAAACAAAGCCGTCGGCAACCACCACCACCACCACCACAACCACCACCAGCGACGACGGCCAGCACGACGGCTTCCCTGACGAATGCGACGCCGAGGTTTGGGCCTCCTTCGACCAGACCTTCCGGCAGGTCCAGTCGGTGCTGGACCGAAACAGAGTACTGATTCAACAGGTGAACGAGAATCATCAGTCTCGAATTTCCAGCAACATGGTGGACAACGTGGCTCTGATCCAAGAACTCAATGGAAACATCTCAAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGATTTCTCCACTGTGTTCAATAACAACAAACCCAGAAATGGCAAAAGAGGCAGCAGCAACCAAGATGCTTAA

Coding sequence (CDS)

ATGGCCGACAACCCCCGCCGCAAGTCCAAAACAAAGCCGTCGGCAACCACCACCACCACCACCACAACCACCACCAGCGACGACGGCCAGCACGACGGCTTCCCTGACGAATGCGACGCCGAGGTTTGGGCCTCCTTCGACCAGACCTTCCGGCAGGTCCAGTCGGTGCTGGACCGAAACAGAGTACTGATTCAACAGGTGAACGAGAATCATCAGTCTCGAATTTCCAGCAACATGGTGGACAACGTGGCTCTGATCCAAGAACTCAATGGAAACATCTCAAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGATTTCTCCACTGTGTTCAATAACAACAAACCCAGAAATGGCAAAAGAGGCAGCAGCAACCAAGATGCTTAA

Protein sequence

MADNPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGSSNQDA

Homology

[Close]

BLAST of Lcy13g009720 vs. ExPASy Swiss-Prot
Match: O04211 (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-21
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 39  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVS 98
           D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR++ NM  NVALIQELNGNISKVV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 99  MYSDFSSDFSTVFNNNKPRNGKRG 123
           MYSD ++ FS+ F+  K  NG  G
Sbjct: 82  MYSDLNTSFSSGFHGGK--NGHDG 103

[Close]

BLAST of Lcy13g009720 vs. ExPASy Swiss-Prot
Match: O80877 (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.2e-13
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 39  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVS 98
           D EVW +    F++ Q  LD+NR LIQ+VNENH SRI  N+  NV LI E+NGNIS+V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 99  MYSDFSSDFSTVFNNNKPRNGKRGSS 125
           +YSD S +F+  F+  + R  K G +
Sbjct: 94  IYSDLSLNFAKKFDQRR-RTTKDGDT 118

[Close]

BLAST of Lcy13g009720 vs. ExPASy Swiss-Prot
Match: Q8S8F5 (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.2e-12
Identity = 34/90 (37.78%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 37  ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKV 96
           + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+I  N+  NV LI+ELN N+ +V
Sbjct: 15  QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74

Query: 97  VSMYSDFSSDFSTVFNNNKPRNGKRGSSNQ 127
             +Y D S++FS     +   +   G  N+
Sbjct: 75  AHLYVDLSNNFSKSMEASSEGDSSEGRGNR 104

[Close]

BLAST of Lcy13g009720 vs. ExPASy Swiss-Prot
Match: Q570U6 (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-11
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 33  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELN 92
           GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+   N+  NV LI+ELN
Sbjct: 8   GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELN 67

Query: 93  GNISKVVSMYSDFSSDFS 109
            NI +V S+Y D S  F+
Sbjct: 68  NNIRRVASLYGDLSHSFA 85

[Close]

BLAST of Lcy13g009720 vs. ExPASy Swiss-Prot
Match: Q94BS8 (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 33/80 (41.25%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 31  HDGFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQE 90
           + GF +  + D ++  +F ++F QVQ +LD+NR+LI ++N+NH+S+ + ++  NV LI+E
Sbjct: 10  YSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRE 69

Query: 91  LNGNISKVVSMYSDFSSDFS 109
           LN NI  V S+Y D S  F+
Sbjct: 70  LNNNIRTVASLYGDLSHSFA 89

[Close]

BLAST of Lcy13g009720 vs. ExPASy TrEMBL
Match: A0A6J1GYX8 (protein EARLY FLOWERING 4-like OS=Cucurbita moschata OX=3662 GN=LOC111458427 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-55
Identity = 121/129 (93.80%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECDA+VWASFDQTFRQVQSVLDR
Sbjct: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNG 120
           NRVLIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ FNNNK RNG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNG 120

Query: 121 KRGSSNQDA 129
           KRGSSN DA
Sbjct: 121 KRGSSNPDA 129

[Close]

BLAST of Lcy13g009720 vs. ExPASy TrEMBL
Match: A0A6J1IH33 (protein EARLY FLOWERING 4-like OS=Cucurbita maxima OX=3661 GN=LOC111477159 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.1e-53
Identity = 115/125 (92.00%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 4   NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVL 63
           N RRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECD +VWASFDQTFRQVQSVLDRNRVL
Sbjct: 5   NHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVL 64

Query: 64  IQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGS 123
           IQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ FNN+K RNGKRGS
Sbjct: 65  IQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRGS 124

Query: 124 SNQDA 129
           SN DA
Sbjct: 125 SNPDA 129

[Close]

BLAST of Lcy13g009720 vs. ExPASy TrEMBL
Match: A0A5A7SR92 (Protein EARLY FLOWERING 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00230 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.7e-51
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DAEVWASFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNG 120
           NR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFST F+N+KPR+G
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSG 120

Query: 121 KRGSSNQDA 129
           KRG++N DA
Sbjct: 121 KRGTTNPDA 129

[Close]

BLAST of Lcy13g009720 vs. ExPASy TrEMBL
Match: A0A1S3CIT1 (uncharacterized protein LOC103501440 OS=Cucumis melo OX=3656 GN=LOC103501440 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 4.7e-51
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DAEVWASFDQTFRQVQSVLDR
Sbjct: 70  MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 129

Query: 61  NRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNG 120
           NR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFST F+N+KPR+G
Sbjct: 130 NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSG 189

Query: 121 KRGSSNQDA 129
           KRG++N DA
Sbjct: 190 KRGTTNPDA 198

[Close]

BLAST of Lcy13g009720 vs. ExPASy TrEMBL
Match: A0A0A0KM35 (Elf4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G202370 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.9e-50
Identity = 112/129 (86.82%), Postives = 116/129 (89.92%), Query Frame = 0


Query: 1   MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSATTTTTTTTTTSDD  H  FPDE D EVWASFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNG 120
           NR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFST F+N+KPR G
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRTG 120

Query: 121 KRGSSNQDA 129
           KRG++N DA
Sbjct: 121 KRGTTNPDA 129

[Close]

BLAST of Lcy13g009720 vs. NCBI nr
Match: XP_022956860.1 (protein EARLY FLOWERING 4-like [Cucurbita moschata] >XP_023534577.1 protein EARLY FLOWERING 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225.7 bits (574), Expect = 2.3e-55
Identity = 121/129 (93.80%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECDA+VWASFDQTFRQVQSVLDR
Sbjct: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNG 120
           NRVLIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ FNNNK RNG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNG 120

Query: 121 KRGSSNQDA 129
           KRGSSN DA
Sbjct: 121 KRGSSNPDA 129

[Close]

BLAST of Lcy13g009720 vs. NCBI nr
Match: KAG6600929.1 (Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031565.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.8 bits (569), Expect = 8.6e-55
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECDA+VWASFDQTFRQVQSVLDR
Sbjct: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNG 120
           NRVLIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ FNN+K RNG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNG 120

Query: 121 KRGSSNQDA 129
           KRGSSN DA
Sbjct: 121 KRGSSNPDA 129

[Close]

BLAST of Lcy13g009720 vs. NCBI nr
Match: XP_022976942.1 (protein EARLY FLOWERING 4-like [Cucurbita maxima])

HSP 1 Score: 216.9 bits (551), Expect = 1.0e-52
Identity = 115/125 (92.00%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 4   NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRVL 63
           N RRKSKTKPSATTTTTTTTTTSDDG+HDGFPDECD +VWASFDQTFRQVQSVLDRNRVL
Sbjct: 5   NHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVL 64

Query: 64  IQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNGKRGS 123
           IQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ FNN+K RNGKRGS
Sbjct: 65  IQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNGKRGS 124

Query: 124 SNQDA 129
           SN DA
Sbjct: 125 SNPDA 129

[Close]

BLAST of Lcy13g009720 vs. NCBI nr
Match: KAA0031907.1 (protein EARLY FLOWERING 4 [Cucumis melo var. makuwa] >TYK27472.1 protein EARLY FLOWERING 4 [Cucumis melo var. makuwa])

HSP 1 Score: 210.3 bits (534), Expect = 9.8e-51
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DAEVWASFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 60

Query: 61  NRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNG 120
           NR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFST F+N+KPR+G
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSG 120

Query: 121 KRGSSNQDA 129
           KRG++N DA
Sbjct: 121 KRGTTNPDA 129

[Close]

BLAST of Lcy13g009720 vs. NCBI nr
Match: XP_008463236.2 (PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo])

HSP 1 Score: 210.3 bits (534), Expect = 9.8e-51
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   MAD-NPRRKSKTKPSATTTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDR 60
           MAD NPRRKSK KPSATTTTTTTTTTSDD  HD FPDE DAEVWASFDQTFRQVQSVLDR
Sbjct: 70  MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 129

Query: 61  NRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNKPRNG 120
           NR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFST F+N+KPR+G
Sbjct: 130 NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSG 189

Query: 121 KRGSSNQDA 129
           KRG++N DA
Sbjct: 190 KRGTTNPDA 198

[Close]

BLAST of Lcy13g009720 vs. TAIR 10
Match: AT2G40080.1 (Protein of unknown function (DUF1313) )

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-22
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 39  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVS 98
           D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR++ NM  NVALIQELNGNISKVV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 99  MYSDFSSDFSTVFNNNKPRNGKRG 123
           MYSD ++ FS+ F+  K  NG  G
Sbjct: 82  MYSDLNTSFSSGFHGGK--NGHDG 103

[Close]

BLAST of Lcy13g009720 vs. TAIR 10
Match: AT2G29950.1 (ELF4-like 1 )

HSP 1 Score: 76.6 bits (187), Expect = 1.6e-14
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 39  DAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKVVS 98
           D EVW +    F++ Q  LD+NR LIQ+VNENH SRI  N+  NV LI E+NGNIS+V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 99  MYSDFSSDFSTVFNNNKPRNGKRGSS 125
           +YSD S +F+  F+  + R  K G +
Sbjct: 94  IYSDLSLNFAKKFDQRR-RTTKDGDT 118

[Close]

BLAST of Lcy13g009720 vs. TAIR 10
Match: AT2G06255.1 (ELF4-like 3 )

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-13
Identity = 34/90 (37.78%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 37  ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELNGNISKV 96
           + D ++  +F+++F QVQ++LD NR+LI ++N+NH+S+I  N+  NV LI+ELN N+ +V
Sbjct: 15  QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74

Query: 97  VSMYSDFSSDFSTVFNNNKPRNGKRGSSNQ 127
             +Y D S++FS     +   +   G  N+
Sbjct: 75  AHLYVDLSNNFSKSMEASSEGDSSEGRGNR 104

[Close]

BLAST of Lcy13g009720 vs. TAIR 10
Match: AT1G17455.1 (ELF4-like 4 )

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-12
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 33  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELN 92
           GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+   N+  NV LI+ELN
Sbjct: 8   GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELN 67

Query: 93  GNISKVVSMYSDFSSDFS 109
            NI +V S+Y D S  F+
Sbjct: 68  NNIRRVASLYGDLSHSFA 85

[Close]

BLAST of Lcy13g009720 vs. TAIR 10
Match: AT1G17455.2 (ELF4-like 4 )

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-12
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 33  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRISSNMVDNVALIQELN 92
           GF D    D ++  SF ++F  VQ +LD+NR+LI ++N+NH+S+   N+  NV LI+ELN
Sbjct: 8   GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELN 67

Query: 93  GNISKVVSMYSDFSSDFS 109
            NI +V S+Y D S  F+
Sbjct: 68  NNIRRVASLYGDLSHSFA 85

The following BLAST results are available for this feature:

BLAST of Lcy13g009720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04211	2.2e-21	65.48	Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1	[more]
O80877	2.2e-13	48.84	Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1	[more]
Q8S8F5	4.2e-12	37.78	Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1	[more]
Q570U6	3.5e-11	44.87	Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1	[more]
Q94BS8	1.3e-10	41.25	Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1	[more]

BLAST of Lcy13g009720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYX8	1.1e-55	93.80	protein EARLY FLOWERING 4-like OS=Cucurbita moschata OX=3662 GN=LOC111458427 PE=...	[more]
A0A6J1IH33	5.1e-53	92.00	protein EARLY FLOWERING 4-like OS=Cucurbita maxima OX=3661 GN=LOC111477159 PE=3 ...	[more]
A0A5A7SR92	4.7e-51	88.37	Protein EARLY FLOWERING 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CIT1	4.7e-51	88.37	uncharacterized protein LOC103501440 OS=Cucumis melo OX=3656 GN=LOC103501440 PE=...	[more]
A0A0A0KM35	8.9e-50	86.82	Elf4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G202370 PE=3 S...	[more]

BLAST of Lcy13g009720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956860.1	2.3e-55	93.80	protein EARLY FLOWERING 4-like [Cucurbita moschata] >XP_023534577.1 protein EARL...	[more]
KAG6600929.1	8.6e-55	93.02	Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]
XP_022976942.1	1.0e-52	92.00	protein EARLY FLOWERING 4-like [Cucurbita maxima]	[more]
KAA0031907.1	9.8e-51	88.37	protein EARLY FLOWERING 4 [Cucumis melo var. makuwa] >TYK27472.1 protein EARLY F...	[more]
XP_008463236.2	9.8e-51	88.37	PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo]	[more]

BLAST of Lcy13g009720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40080.1	1.6e-22	65.48	Protein of unknown function (DUF1313)	[more]
AT2G29950.1	1.6e-14	48.84	ELF4-like 1	[more]
AT2G06255.1	3.0e-13	37.78	ELF4-like 3	[more]
AT1G17455.1	2.5e-12	44.87	ELF4-like 4	[more]
AT1G17455.2	2.5e-12	44.87	ELF4-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein EARLY FLOWERING 4 domain	PFAM	PF07011	Elf4	coord: 38..115 e-value: 1.1E-35 score: 121.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR33469:SF5	PROTEIN EARLY FLOWERING 4	coord: 9..124
IPR040462	Protein EARLY FLOWERING 4	PANTHER	PTHR33469	PROTEIN ELF4-LIKE 4	coord: 9..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g009720.1	Lcy13g009720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009649	entrainment of circadian clock
biological_process	GO:0000122	negative regulation of transcription by RNA polymerase II
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0042753	positive regulation of circadian rhythm
biological_process	GO:0010017	red or far-red light signaling pathway
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0010114	response to red light
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription regulator complex
molecular_function	GO:0042803	protein homodimerization activity