Lcy13g009450 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g009450
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	17.8 kDa class I heat shock protein-like
Location	Chr13: 9579391 .. 9579734 (-)
RNA-Seq Expression	Lcy13g009450
Synteny	Lcy13g009450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGGAGCAGTTGGAAGTTCATGAGGAGATTCCGGCTGCCGGAAAATGCAAAAGTTGAAGAGGTGAAGGCAAGCATGGAGAACGGAGTGCTGACTGTGACAGTGCCCAAAATGGAAGAGAAGAAGCCTGAAATCAAGTCAATTGACATCTCTGATTAAAGTTAAACATTGTTCGTGTTGTGTCATTTGGGTTATGTTTAATATGGTCATTGTGTTACGTAAATGCCTGAAAAATGTATTTTGATGATGTGTGTAACCTTTTAAAGTTAAAAGTTTCTCGAATAAAGATGAAAGGGTTTGGATTGTTGGTTATACCGGACCTTCATTTCCGTTATATTGAT

mRNA sequence

ATGGAGCGGAGCAGTTGGAAGTTCATGAGGAGATTCCGGCTGCCGGAAAATGCAAAAGTTGAAGAGGTGAAGGCAAGCATGGAGAACGGAGTGCTGACTGTGACAGTGCCCAAAATGGAAGAGAAGAAGCCTGAAATCAAGTCAATTGACATCTCTGATTAAAGTTAAACATTGTTCGTGTTGTGTCATTTGGGTTATGTTTAATATGGTCATTGTGTTACGTAAATGCCTGAAAAATGTATTTTGATGATGTGTGTAACCTTTTAAAGTTAAAAGTTTCTCGAATAAAGATGAAAGGGTTTGGATTGTTGGTTATACCGGACCTTCATTTCCGTTATATTGAT

Coding sequence (CDS)

ATGGAGCGGAGCAGTTGGAAGTTCATGAGGAGATTCCGGCTGCCGGAAAATGCAAAAGTTGAAGAGGTGAAGGCAAGCATGGAGAACGGAGTGCTGACTGTGACAGTGCCCAAAATGGAAGAGAAGAAGCCTGAAATCAAGTCAATTGACATCTCTGATTAA

Protein sequence

MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDISD

Homology

[Close]

BLAST of Lcy13g009450 vs. ExPASy Swiss-Prot
Match: P19036 (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-17
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KFMRRFRLPENAKVEEVKASMENGVL+VTVPK++E KPE+KS+DIS
Sbjct: 104 VERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDIS 155

[Close]

BLAST of Lcy13g009450 vs. ExPASy Swiss-Prot
Match: P30221 (17.8 kDa class I heat shock protein OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-16
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           MERSS KFMRRFRLPENAK+++VKASMENGVLTVTVPK E KKPE+KSI+IS
Sbjct: 102 MERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEIS 153

[Close]

BLAST of Lcy13g009450 vs. ExPASy Swiss-Prot
Match: P13853 (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana OX=3702 GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-16
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KF RRFRLPENAK+EE+KASMENGVL+VTVPK+ EKKPE+KSIDIS
Sbjct: 105 VERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDIS 156

[Close]

BLAST of Lcy13g009450 vs. ExPASy Swiss-Prot
Match: P05478 (18.5 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.4e-16
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KFMRRFRLPENAKVE+VKASMENGVLTVTVPK E KKP++K+I+IS
Sbjct: 109 VERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEIS 160

[Close]

BLAST of Lcy13g009450 vs. ExPASy Swiss-Prot
Match: P27880 (18.2 kDa class I heat shock protein OS=Medicago sativa OX=3879 GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.4e-16
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KFMRRFRLPENAK+++VKA+MENGVLTVTVPK E KKPE+K+IDIS
Sbjct: 106 LERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDIS 157

[Close]

BLAST of Lcy13g009450 vs. ExPASy TrEMBL
Match: A0A6J1CB17 (17.8 kDa class I heat shock protein-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010034 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.0e-17
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS
Sbjct: 109 IERSSGKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 160

[Close]

BLAST of Lcy13g009450 vs. ExPASy TrEMBL
Match: A0A6J1CC00 (18.1 kDa class I heat shock protein-like OS=Momordica charantia OX=3673 GN=LOC111010100 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.0e-17
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS
Sbjct: 109 IERSSGKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 160

[Close]

BLAST of Lcy13g009450 vs. ExPASy TrEMBL
Match: A0A5A7UAZ9 (17.8 kDa class I heat shock protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00300 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.0e-17
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS
Sbjct: 107 VERSSGKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 158

[Close]

BLAST of Lcy13g009450 vs. ExPASy TrEMBL
Match: A0A5D3DKI4 (17.8 kDa class I heat shock protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold610G00230 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.0e-17
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS
Sbjct: 107 VERSSGKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 158

[Close]

BLAST of Lcy13g009450 vs. ExPASy TrEMBL
Match: A0A5A7T3F7 (18.1 kDa class I heat shock protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G00190 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.0e-17
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS
Sbjct: 107 VERSSGKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 158

[Close]

BLAST of Lcy13g009450 vs. NCBI nr
Match: KAA0051547.1 (17.8 kDa class I heat shock protein-like [Cucumis melo var. makuwa] >TYK21276.1 17.8 kDa class I heat shock protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS
Sbjct: 107 VERSSGKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 158

[Close]

BLAST of Lcy13g009450 vs. NCBI nr
Match: TYK24125.1 (17.8 kDa class I heat shock protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS
Sbjct: 107 VERSSGKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 158

[Close]

BLAST of Lcy13g009450 vs. NCBI nr
Match: KAA0037328.1 (18.1 kDa class I heat shock protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS
Sbjct: 107 VERSSGKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 158

[Close]

BLAST of Lcy13g009450 vs. NCBI nr
Match: XP_022138993.1 (17.3 kDa class I heat shock protein-like [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS
Sbjct: 109 IERSSGKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 160

[Close]

BLAST of Lcy13g009450 vs. NCBI nr
Match: XP_038891780.1 (17.8 kDa class I heat shock protein-like [Benincasa hispida])

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS
Sbjct: 107 VERSSGKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 158

[Close]

BLAST of Lcy13g009450 vs. TAIR 10
Match: AT3G46230.1 (heat shock protein 17.4 )

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-18
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KFMRRFRLPENAKVEEVKASMENGVL+VTVPK++E KPE+KS+DIS
Sbjct: 104 VERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDIS 155

[Close]

BLAST of Lcy13g009450 vs. TAIR 10
Match: AT1G53540.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-17
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS KF RRFRLPENAK+EE+KASMENGVL+VTVPK+ EKKPE+KSIDIS
Sbjct: 105 VERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDIS 156

[Close]

BLAST of Lcy13g009450 vs. TAIR 10
Match: AT5G59720.1 (heat shock protein 18.2 )

HSP 1 Score: 84.0 bits (206), Expect = 4.1e-17
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ER+S KFMRRFRLPENAK+EEVKA+MENGVLTV VPK  EKKP++KSIDIS
Sbjct: 107 VERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDIS 158

[Close]

BLAST of Lcy13g009450 vs. TAIR 10
Match: AT2G29500.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-14
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEEKKPEIKSIDIS 53
           +ERSS +F RRFRLPEN K+++VKA+MENGVLTVTVPK E KK ++KSI IS
Sbjct: 101 VERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQIS 152

[Close]

BLAST of Lcy13g009450 vs. TAIR 10
Match: AT1G07400.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 7.2e-14
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   MERSSWKFMRRFRLPENAKVEEVKASMENGVLTVTVPKMEE--KKPEIKSIDIS 53
           +ERSS +F R+F+LPEN K+++VKASMENGVLTVTVPK+EE  KK ++KSIDIS
Sbjct: 103 VERSSGQFSRKFKLPENVKMDQVKASMENGVLTVTVPKVEEAKKKAQVKSIDIS 156

The following BLAST results are available for this feature:

BLAST of Lcy13g009450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19036	2.3e-17	84.62	17.4 kDa class I heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP17.4A ...	[more]
P30221	1.2e-16	84.62	17.8 kDa class I heat shock protein OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
P13853	1.5e-16	82.69	17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana OX=3702 GN=HSP17.6...	[more]
P05478	3.4e-16	82.69	18.5 kDa class I heat shock protein OS=Glycine max OX=3847 GN=HSP18.5-C PE=3 SV=...	[more]
P27880	4.4e-16	80.77	18.2 kDa class I heat shock protein OS=Medicago sativa OX=3879 GN=HSP18.2 PE=2 S...	[more]

BLAST of Lcy13g009450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CB17	7.0e-17	96.15	17.8 kDa class I heat shock protein-like isoform X1 OS=Momordica charantia OX=36...	[more]
A0A6J1CC00	7.0e-17	96.15	18.1 kDa class I heat shock protein-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5A7UAZ9	7.0e-17	96.15	17.8 kDa class I heat shock protein-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DKI4	7.0e-17	96.15	17.8 kDa class I heat shock protein-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T3F7	7.0e-17	96.15	18.1 kDa class I heat shock protein-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Lcy13g009450 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051547.1	1.5e-16	96.15	17.8 kDa class I heat shock protein-like [Cucumis melo var. makuwa] >TYK21276.1 ...	[more]
TYK24125.1	1.5e-16	96.15	17.8 kDa class I heat shock protein-like [Cucumis melo var. makuwa]	[more]
KAA0037328.1	1.5e-16	96.15	18.1 kDa class I heat shock protein-like [Cucumis melo var. makuwa]	[more]
XP_022138993.1	1.5e-16	96.15	17.3 kDa class I heat shock protein-like [Momordica charantia]	[more]
XP_038891780.1	1.5e-16	96.15	17.8 kDa class I heat shock protein-like [Benincasa hispida]	[more]

BLAST of Lcy13g009450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46230.1	1.7e-18	84.62	heat shock protein 17.4	[more]
AT1G53540.1	1.1e-17	82.69	HSP20-like chaperones superfamily protein	[more]
AT5G59720.1	4.1e-17	80.77	heat shock protein 18.2	[more]
AT2G29500.1	4.2e-14	71.15	HSP20-like chaperones superfamily protein	[more]
AT1G07400.1	7.2e-14	70.37	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 1..52 e-value: 4.1E-16 score: 59.0
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 1..53 score: 18.462578
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 1..52 e-value: 2.0E-19 score: 71.8
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 1..52
IPR031107	Small heat shock protein HSP20	PANTHER	PTHR11527	HEAT-SHOCK PROTEIN 20 FAMILY MEMBER	coord: 1..52
None	No IPR available	PANTHER	PTHR11527:SF279	17.4 KDA CLASS I HEAT SHOCK PROTEIN	coord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g009450.1	Lcy13g009450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm