Lcy13g009250 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g009250
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	polyamine-modulated factor 1-binding protein 1
Location	Chr13: 9369404 .. 9369580 (-)
RNA-Seq Expression	Lcy13g009250
Synteny	Lcy13g009250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGAAGAAACCGACCCAATCGGCCAAAGAGCCAAAGCAAATGCCCAATCACCAGGAAGAGAACAGCGATTCAGAGCAACCCAAATCCACCATGGAAGACTCTGTGGAGAAGTCGCAGTTGCAGAGCATGATGAGTCGCGCCTCAACTCAACCTCTTCTCGTTCCCGTGTAG

mRNA sequence

ATGGCGAAGAAGAAACCGACCCAATCGGCCAAAGAGCCAAAGCAAATGCCCAATCACCAGGAAGAGAACAGCGATTCAGAGCAACCCAAATCCACCATGGAAGACTCTGTGGAGAAGTCGCAGTTGCAGAGCATGATGAGTCGCGCCTCAACTCAACCTCTTCTCGTTCCCGTGTAG

Coding sequence (CDS)

ATGGCGAAGAAGAAACCGACCCAATCGGCCAAAGAGCCAAAGCAAATGCCCAATCACCAGGAAGAGAACAGCGATTCAGAGCAACCCAAATCCACCATGGAAGACTCTGTGGAGAAGTCGCAGTTGCAGAGCATGATGAGTCGCGCCTCAACTCAACCTCTTCTCGTTCCCGTGTAG

Protein sequence

MAKKKPTQSAKEPKQMPNHQEENSDSEQPKSTMEDSVEKSQLQSMMSRASTQPLLVPV

Homology

[Close]

BLAST of Lcy13g009250 vs. ExPASy TrEMBL
Match: A0A6J1HKX2 (polyamine-modulated factor 1-binding protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111465485 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1  MAKKKPTQSAKEPKQMPNHQEENSDSEQP-KSTMEDSVEKSQLQSMMS 48
          MAKKKPT+S  EPK++P+HQEEN DSEQ  KS +++SVEKSQLQS+ S
Sbjct: 1  MAKKKPTRSGNEPKKVPDHQEENRDSEQQLKSAVDESVEKSQLQSLKS 48

[Close]

BLAST of Lcy13g009250 vs. ExPASy TrEMBL
Match: A0A1S3C0Q0 (cingulin OS=Cucumis melo OX=3656 GN=LOC103495485 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MAKKKPTQSAKEPKQMPNHQEENSDSEQPKSTMEDSVEKSQLQSMMSR 49
          MAKKKPT+SAKEPKQ+PN+QEE SDSEQP+S M+D  +   L+S+  R
Sbjct: 1  MAKKKPTRSAKEPKQIPNNQEETSDSEQPRSAMDDDSKLQSLKSLNER 48

[Close]

BLAST of Lcy13g009250 vs. ExPASy TrEMBL
Match: A0A6J1FD80 (polyamine-modulated factor 1-binding protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111444320 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 1  MAKKKPTQSAKEPKQMPNHQEENSDSEQP--KSTMEDSVEKSQLQSMMS 48
          MAKKKPT+S  EPK++P+HQEEN DSEQ   KS +++SVEKSQLQS+ S
Sbjct: 1  MAKKKPTRSGNEPKKVPDHQEENRDSEQQLLKSAVDESVEKSQLQSLKS 49

[Close]

BLAST of Lcy13g009250 vs. ExPASy TrEMBL
Match: A0A5D3D489 (Cingulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00730 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MAKKKPTQSAKEPKQMPNHQEENSDSEQPKSTMEDSVEKSQLQSMMSR 49
          MAKKKPT+SA+EPKQ+PN+QEE SDSEQP+S M+D  +   L+S+  R
Sbjct: 1  MAKKKPTRSAEEPKQIPNNQEETSDSEQPRSAMDDDSKLQSLKSLNER 48

[Close]

BLAST of Lcy13g009250 vs. NCBI nr
Match: XP_008455286.1 (PREDICTED: cingulin [Cucumis melo])

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-04
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MAKKKPTQSAKEPKQMPNHQEENSDSEQPKSTMEDSVEKSQLQSMMSR 49
          MAKKKPT+SAKEPKQ+PN+QEE SDSEQP+S M+D  +   L+S+  R
Sbjct: 1  MAKKKPTRSAKEPKQIPNNQEETSDSEQPRSAMDDDSKLQSLKSLNER 48

[Close]

BLAST of Lcy13g009250 vs. NCBI nr
Match: XP_022965652.1 (polyamine-modulated factor 1-binding protein 1 [Cucurbita maxima])

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-04
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1  MAKKKPTQSAKEPKQMPNHQEENSDSEQP-KSTMEDSVEKSQLQSMMS 48
          MAKKKPT+S  EPK++P+HQEEN DSEQ  KS +++SVEKSQLQS+ S
Sbjct: 1  MAKKKPTRSGNEPKKVPDHQEENRDSEQQLKSAVDESVEKSQLQSLKS 48

[Close]

BLAST of Lcy13g009250 vs. NCBI nr
Match: XP_022938144.1 (polyamine-modulated factor 1-binding protein 1 [Cucurbita moschata])

HSP 1 Score: 54.3 bits (129), Expect = 4.1e-04
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 1  MAKKKPTQSAKEPKQMPNHQEENSDSEQP--KSTMEDSVEKSQLQSMMS 48
          MAKKKPT+S  EPK++P+HQEEN DSEQ   KS +++SVEKSQLQS+ S
Sbjct: 1  MAKKKPTRSGNEPKKVPDHQEENRDSEQQLLKSAVDESVEKSQLQSLKS 49

[Close]

BLAST of Lcy13g009250 vs. NCBI nr
Match: XP_023537259.1 (myosin-7B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.9 bits (128), Expect = 5.3e-04
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1  MAKKKPTQSAKEPKQMPNHQEENSDSE-QPKSTMEDSVEKSQLQSMMS 48
          MAKKKPT+S  EPK++ +HQEEN DSE QPKS +++SVEKSQLQS+ S
Sbjct: 1  MAKKKPTRSGNEPKKVTDHQEENRDSEQQPKSGVDESVEKSQLQSLKS 48

[Close]

BLAST of Lcy13g009250 vs. NCBI nr
Match: KAA0063670.1 (cingulin [Cucumis melo var. makuwa] >TYK18356.1 cingulin [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 9.1e-04
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MAKKKPTQSAKEPKQMPNHQEENSDSEQPKSTMEDSVEKSQLQSMMSR 49
          MAKKKPT+SA+EPKQ+PN+QEE SDSEQP+S M+D  +   L+S+  R
Sbjct: 1  MAKKKPTRSAEEPKQIPNNQEETSDSEQPRSAMDDDSKLQSLKSLNER 48

The following BLAST results are available for this feature:

BLAST of Lcy13g009250 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g009250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HKX2	1.5e-04	68.75	polyamine-modulated factor 1-binding protein 1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A1S3C0Q0	1.5e-04	64.58	cingulin OS=Cucumis melo OX=3656 GN=LOC103495485 PE=4 SV=1	[more]
A0A6J1FD80	2.0e-04	67.35	polyamine-modulated factor 1-binding protein 1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5D3D489	4.4e-04	62.50	Cingulin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00730 PE=4 ...	[more]

BLAST of Lcy13g009250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455286.1	3.1e-04	64.58	PREDICTED: cingulin [Cucumis melo]	[more]
XP_022965652.1	3.1e-04	68.75	polyamine-modulated factor 1-binding protein 1 [Cucurbita maxima]	[more]
XP_022938144.1	4.1e-04	67.35	polyamine-modulated factor 1-binding protein 1 [Cucurbita moschata]	[more]
XP_023537259.1	5.3e-04	68.75	myosin-7B-like [Cucurbita pepo subsp. pepo]	[more]
KAA0063670.1	9.1e-04	62.50	cingulin [Cucumis melo var. makuwa] >TYK18356.1 cingulin [Cucumis melo var. maku...	[more]

BLAST of Lcy13g009250 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g009250.1	Lcy13g009250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome