Lcy13g009120 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g009120
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
LocationChr13: 9039504 .. 9040524 (-)
RNA-Seq ExpressionLcy13g009120
SyntenyLcy13g009120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGACTGTTTGCACACAATTCATCATCATTCTTGACCATTTTTCACTAAAGCCCATTCTTCCTCATCCAAGCCAAATCTTTTACACATAGGCATTGATATTAATCCTATATGCTCTATGTGCAGGTCGAAAAGGGAAAGCCCATCGCACACATTATGGAAATGCAAGACCATCAGGTATGTATGGCAGAATTTCTTCCCTAATCTAATTGAATTTATATCTTGTTGCAGAGAAAATGGGGATGTGGGAGAAATCTGGAATGGCTTGGCGGATCAACTGAACAAAGAAGAACTGGAAAAAGTGGTTGTAATTCTATGGACTACATGGAATTTTAGGAATAAAGCTACGATGGGATCAAGCTGAACAACAGTGCAGGAACTATCCAGACAAATCAGAAGAAATATTGAGGAGCAAAGGAAAGGCAGAAAAGACAATCAATGGATGCTAACCTCGGAGAGCTAGGGGAATCAGGAAGTATGAACTCCTCCACCGGCTGGTCTGCTAAAAATTAATGTGGATGCCTCATGGAACAATGATCAGAGAAGAGGTGGTGTGGGCTGGATAATTCGTGATTCTCAAGGATCTCCTATAGGAATGGGCAGTGCAAAAATCAAGAGAGGATGGTCAATTCGGACGATGGAGGCAGCGGCTGTAAAGGAGGGATTAGAAGCTTACCTGGCAGCAAAGGGGGAAACTCAATCTCGAATCCTCATCGAATCAGATTCGATTGAGGTCGTTAGAGCTCTGAACCACGAAGATGAAGATGTTTCAGAAACGAGGGTGATCTTGGACGAAATCCATCAATTAGCGTCCCTGGCCGGTGAAGTCTCGTTTGTGAAATGCCCTCGAGTGGTCAATGGAATCGTGCACCTGATCGCGCGTTCGACGGCTGGAATTTGGCCGGAGTCAGGCAAGTCTTCCGTAGTTGAAGACGGCAGTTTTGGGCAATTTATTTCTTCCACGCTGGAAGATAAATGGAGTTGTTGGGGAGGGAATTTCCCGCTTTTTGTATCCCATTTATAA

mRNA sequence

AGACTGTTTGCACACAATTCATCATCATTCTTGACCATTTTTCACTAAAGCCCATTCTTCCTCATCCAAGCCAAATCTTTTACACATAGGCATTGATATTAATCCTATATGCTCTATGTGCAGGTCGAAAAGGGAAAGCCCATCGCACACATTATGGAAATGCAAGACCATCAGGTATGTATGGCAGAATTTCTTCCCTAATCTAATTGAATTTATATCTTGTTGCAGAGAAAATGGGGATGTGGGAGAAATCTGGAATGGCTTGGCGGATCAACTGAACAAAGAAGAACTGGAAAAAGTGGTTGTAATTCTATGGACTACATGGAATTTTAGGAATAAAGCTACGATGGGATCAAGCTGAACAACAGTGCAGGAACTATCCAGACAAATCAGAAGAAATATTGAGGAGCAAAGGAAAGGCAGAAAAGACAATCAATGGATGCTAACCTCGGAGAGCTAGGGGAATCAGGAAGTATGAACTCCTCCACCGGCTGGTCTGCTAAAAATTAATGTGGATGCCTCATGGAACAATGATCAGAGAAGAGGTGGTGTGGGCTGGATAATTCGTGATTCTCAAGGATCTCCTATAGGAATGGGCAGTGCAAAAATCAAGAGAGGATGGTCAATTCGGACGATGGAGGCAGCGGCTGTAAAGGAGGGATTAGAAGCTTACCTGGCAGCAAAGGGGGAAACTCAATCTCGAATCCTCATCGAATCAGATTCGATTGAGGTCGTTAGAGCTCTGAACCACGAAGATGAAGATGTTTCAGAAACGAGGGTGATCTTGGACGAAATCCATCAATTAGCGTCCCTGGCCGGTGAAGTCTCGTTTGTGAAATGCCCTCGAGTGGTCAATGGAATCGTGCACCTGATCGCGCGTTCGACGGCTGGAATTTGGCCGGAGTCAGGCAAGTCTTCCGTAGTTGAAGACGGCAGTTTTGGGCAATTTATTTCTTCCACGCTGGAAGATAAATGGAGTTGTTGGGGAGGGAATTTCCCGCTTTTTGTATCCCATTTATAA

Coding sequence (CDS)

ATGGGCAGTGCAAAAATCAAGAGAGGATGGTCAATTCGGACGATGGAGGCAGCGGCTGTAAAGGAGGGATTAGAAGCTTACCTGGCAGCAAAGGGGGAAACTCAATCTCGAATCCTCATCGAATCAGATTCGATTGAGGTCGTTAGAGCTCTGAACCACGAAGATGAAGATGTTTCAGAAACGAGGGTGATCTTGGACGAAATCCATCAATTAGCGTCCCTGGCCGGTGAAGTCTCGTTTGTGAAATGCCCTCGAGTGGTCAATGGAATCGTGCACCTGATCGCGCGTTCGACGGCTGGAATTTGGCCGGAGTCAGGCAAGTCTTCCGTAGTTGAAGACGGCAGTTTTGGGCAATTTATTTCTTCCACGCTGGAAGATAAATGGAGTTGTTGGGGAGGGAATTTCCCGCTTTTTGTATCCCATTTATAA

Protein sequence

MGSAKIKRGWSIRTMEAAAVKEGLEAYLAAKGETQSRILIESDSIEVVRALNHEDEDVSETRVILDEIHQLASLAGEVSFVKCPRVVNGIVHLIARSTAGIWPESGKSSVVEDGSFGQFISSTLEDKWSCWGGNFPLFVSHL
Homology
[Close]
BLAST of Lcy13g009120 vs. ExPASy TrEMBL
Match: A0A7J8T123 (RNase H domain-containing protein OS=Gossypium davidsonii OX=34287 GN=Godav_000749 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 6.3e-04
Identity = 29/88 (32.95%), Postives = 49/88 (55.68%), Query Frame = 0 

Query: 11  SIRTMEAAAVKEGLEAYLAAKGETQSRILIESDSIEVVRALNHEDEDVSETRVILDEIHQ 70
           S+  +EA A ++ L+  +  K E+   I++E DS+ ++R    ++ D S     +++IHQ
Sbjct: 43  SVFAVEAVACRQALQTGIGMKWES---IILEGDSLSIIRKCKKKNPDESWVSAYINDIHQ 102

Query: 71  LASLAGEVSFVKCPRVVNGIVHLIARST 99
           L     E SF   PR VN + H+IA+ T
Sbjct: 103 LRQKLKECSFEYVPRSVNNLAHIIAKET 127

The following BLAST results are available for this feature:
BLAST of Lcy13g009120 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g009120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J8T1236.3e-0432.95RNase H domain-containing protein OS=Gossypium davidsonii OX=34287 GN=Godav_0007... [more]
BLAST of Lcy13g009120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lcy13g009120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 3..101
e-value: 3.7E-6
score: 28.9
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 2..97
e-value: 8.9E-8
score: 32.0
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 15..96
e-value: 1.31301E-9
score: 50.7756
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 9..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g009120.1Lcy13g009120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity