Lcy13g007190 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g007190
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Mitochondrial import inner membrane translocase subunit
Location	Chr13: 6651568 .. 6652671 (-)
RNA-Seq Expression	Lcy13g007190
Synteny	Lcy13g007190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCTGGACATCGTTTGCGCCTTCTCAAAGCAACTCACCGAGAGGTAATTTGGATACAAGAAAAATGTGCCTGAGTTTGTTGTCTGCAAGAGTGCAGTGGACAGTAATCTGGTTATGATGACAAACCATAAAGACCTGACGAAGTTGTGGCTTGTGACTTGGTAGTTTTGTGGGGACATGTAAATTTGTTGATCTTATTGCCCTACATGTATTTTATACTAACTATGCACAGATACAAATGTTTCATTCTGTTAGAGGGCTCTGAAAAGCTTGAGAGGGGATTAGAACGGTTGTTCCTCGTCCTCCCTCCTTGCCAAGTAAAATAGTTCTGAAAAGCTAACTAGTAGGCATCCACGAGAACATATCCTTTATGCCTGATAAAGTTAAATTTTGACTAGAGATTTGTTATTGAACGCATAATAGTAGATCAAGTATTATCAATACTCTCAAGACTGAAGGGTGATATGTGATATTTTGGTTCAGTTCTCAAATCTAGTATTATCAATACTAGAGATTTGGAAAGATGGATATATCATGTCTTTAACTAATTACCATAAACCATGAGATGAAGAAGGGTGCAAATAATATGTGCACATTCCACTAGAGTATGATTTAAGCTGTTGTAATTGATTTGTCGTTCTTGACTAAAATTTTCATAATTGAGTGTCATTGTGTTTTTCTGTGTTTTTAATTCCTGGATTTGACCCCTCCCCTCAAGAGTTTAGATAGCGGGATGCTTTGTTGTATGGCTTATAGTTGCAATGTCAAACTTTAATGCTATTGGTAAATTATTTGATCATTTTGTTGAACAGGAAGAGAAGCAAAGAGCTATGCTTTGCTGAGATGGTGGCTAAGCTTACCAGTGTCTGTTGGGACGAGTGTATCACTGGTACGCCAGGGAGTAAGTTCAGCTCTAGTGAATCCAACTGCCTATCAAACTGTGTCCAACGCTACTGCTCATCATCATTAAACGATTCCAAAACAGTTAATGGATCTATTGTTACATTCAATCTGAAAGAAAAAGGGTCTGAACTTCTGAAAATATTGTGTTCGCTTTTTAAAGTTGATGCATTACCCAAATCAGATTGTTTTACATCTTGA

mRNA sequence

ATGTCGCTGGACATCGTTTGCGCCTTCTCAAAGCAACTCACCGAGAGGAAGAGAAGCAAAGAGCTATGCTTTGCTGAGATGGTGGCTAAGCTTACCAGTGTCTGTTGGGACGAGTGTATCACTGGTACGCCAGGGAGTAAGTTCAGCTCTAGTGAATCCAACTGCCTATCAAACTGTGTCCAACGCTACTGCTCATCATCATTAAACGATTCCAAAACAGTTAATGGATCTATTGTTACATTCAATCTGAAAGAAAAAGGGTCTGAACTTCTGAAAATATTGTGTTCGCTTTTTAAAGTTGATGCATTACCCAAATCAGATTGTTTTACATCTTGA

Coding sequence (CDS)

ATGTCGCTGGACATCGTTTGCGCCTTCTCAAAGCAACTCACCGAGAGGAAGAGAAGCAAAGAGCTATGCTTTGCTGAGATGGTGGCTAAGCTTACCAGTGTCTGTTGGGACGAGTGTATCACTGGTACGCCAGGGAGTAAGTTCAGCTCTAGTGAATCCAACTGCCTATCAAACTGTGTCCAACGCTACTGCTCATCATCATTAAACGATTCCAAAACAGTTAATGGATCTATTGTTACATTCAATCTGAAAGAAAAAGGGTCTGAACTTCTGAAAATATTGTGTTCGCTTTTTAAAGTTGATGCATTACCCAAATCAGATTGTTTTACATCTTGA

Protein sequence

MSLDIVCAFSKQLTERKRSKELCFAEMVAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSLNDSKTVNGSIVTFNLKEKGSELLKILCSLFKVDALPKSDCFTS

Homology

[Close]

BLAST of Lcy13g007190 vs. ExPASy Swiss-Prot
Match: Q9XGY4 (Mitochondrial import inner membrane translocase subunit TIM8 OS=Arabidopsis thaliana OX=3702 GN=TIM8 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-11
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 26 EMVAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSLNDSKTVN 76
          EMV+K+TSVCWD+CIT  PGSKFSSSES+CL++C QRY   S+   K  N
Sbjct: 26 EMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCAQRYMDMSMIIMKRFN 75

[Close]

BLAST of Lcy13g007190 vs. ExPASy Swiss-Prot
Match: P0CR95 (Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=TIM8 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-06
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 28 VAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSL 69
          + +LT+ CW+ CITG   SKFS SE+ CL NCV R+  SSL
Sbjct: 35 IHELTNTCWNTCITGGISSKFSKSEAQCLENCVDRFLDSSL 75

[Close]

BLAST of Lcy13g007190 vs. ExPASy Swiss-Prot
Match: P0CR94 (Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=TIM8 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-06
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 28 VAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSL 69
          + +LT+ CW+ CITG   SKFS SE+ CL NCV R+  SSL
Sbjct: 35 IHELTNTCWNTCITGGISSKFSKSEAQCLENCVDRFLDSSL 75

[Close]

BLAST of Lcy13g007190 vs. ExPASy TrEMBL
Match: A0A6J1IHF0 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3661 GN=LOC111472993 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 25 AEMVAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSL 69
          AEMVAKLTSVCWD+CITGTPGSKFSSSESNCLSNC QRY   S+
Sbjct: 25 AEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSI 68

[Close]

BLAST of Lcy13g007190 vs. ExPASy TrEMBL
Match: A0A6J1E0G1 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita moschata OX=3662 GN=LOC111429714 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 25 AEMVAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSL 69
          AEMVAKLTSVCWD+CITGTPGSKFSSSESNCLSNC QRY   S+
Sbjct: 25 AEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSI 68

[Close]

BLAST of Lcy13g007190 vs. ExPASy TrEMBL
Match: A0A0A0LTY7 (Mitochondrial import inner membrane translocase subunit OS=Cucumis sativus OX=3659 GN=Csa_1G001280 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 25 AEMVAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSL 69
          AEMVAKLTSVCWD+CITGTPGSKFSSSESNCLSNC QRY   S+
Sbjct: 25 AEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSI 68

[Close]

BLAST of Lcy13g007190 vs. ExPASy TrEMBL
Match: A0A1S3CLD0 (Mitochondrial import inner membrane translocase subunit OS=Cucumis melo OX=3656 GN=LOC103502294 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 25 AEMVAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSL 69
          AEMVAKLTSVCWD+CITGTPGSKFSSSESNCLSNC QRY   S+
Sbjct: 25 AEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSI 68

[Close]

BLAST of Lcy13g007190 vs. ExPASy TrEMBL
Match: A0A6J1C212 (Mitochondrial import inner membrane translocase subunit OS=Momordica charantia OX=3673 GN=LOC111007226 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.9e-12
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 25 AEMVAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSL 69
          AEMVAKLTSVCWD+CITG+PGSKFSSSESNCLSNC QRY   S+
Sbjct: 25 AEMVAKLTSVCWDKCITGSPGSKFSSSESNCLSNCAQRYMDMSI 68

[Close]

BLAST of Lcy13g007190 vs. NCBI nr
Match: XP_008464391.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Cucumis melo] >XP_011649996.1 mitochondrial import inner membrane translocase subunit TIM8 [Cucumis sativus] >XP_022921432.1 mitochondrial import inner membrane translocase subunit TIM8 [Cucurbita moschata] >XP_022924732.1 mitochondrial import inner membrane translocase subunit TIM8-like [Cucurbita moschata] >XP_022974369.1 mitochondrial import inner membrane translocase subunit TIM8-like [Cucurbita maxima] >XP_022988609.1 mitochondrial import inner membrane translocase subunit TIM8 [Cucurbita maxima] >XP_023516926.1 mitochondrial import inner membrane translocase subunit TIM8 [Cucurbita pepo subsp. pepo] >XP_023529319.1 mitochondrial import inner membrane translocase subunit TIM8-like [Cucurbita pepo subsp. pepo] >XP_038878330.1 mitochondrial import inner membrane translocase subunit TIM8 [Benincasa hispida] >KGN63456.1 hypothetical protein Csa_014027 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 3.5e-12
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 25 AEMVAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSL 69
          AEMVAKLTSVCWD+CITGTPGSKFSSSESNCLSNC QRY   S+
Sbjct: 25 AEMVAKLTSVCWDKCITGTPGSKFSSSESNCLSNCAQRYMDMSI 68

[Close]

BLAST of Lcy13g007190 vs. NCBI nr
Match: XP_022135207.1 (mitochondrial import inner membrane translocase subunit TIM8 [Momordica charantia])

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-11
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 25 AEMVAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSL 69
          AEMVAKLTSVCWD+CITG+PGSKFSSSESNCLSNC QRY   S+
Sbjct: 25 AEMVAKLTSVCWDKCITGSPGSKFSSSESNCLSNCAQRYMDMSI 68

[Close]

BLAST of Lcy13g007190 vs. NCBI nr
Match: KAG7023044.1 (Mitochondrial import inner membrane translocase subunit TIM8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.0 bits (193), Expect = 3.0e-11
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 25 AEMVAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSL 69
          AEMVAKLTSVCW +C+TGTPGSKFSSSESNCLSNC QRY   S+
Sbjct: 25 AEMVAKLTSVCWTKCVTGTPGSKFSSSESNCLSNCAQRYMDMSI 68

[Close]

BLAST of Lcy13g007190 vs. NCBI nr
Match: XP_022859995.1 (mitochondrial import inner membrane translocase subunit TIM8-like [Olea europaea var. sylvestris] >CAA2966485.1 mitochondrial import inner membrane translocase subunit TIM8 [Olea europaea subsp. europaea])

HSP 1 Score: 79.0 bits (193), Expect = 3.0e-11
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 11 KQLTERKRSKELCFAEMVAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSL 69
          +QL  ++R K +   EM+AKLT+VCWD+CITGTPGSKFSSSES+CL+NC QRY   SL
Sbjct: 8  QQLITQEREKAM-VNEMIAKLTTVCWDKCITGTPGSKFSSSESSCLTNCAQRYMDMSL 64

[Close]

BLAST of Lcy13g007190 vs. NCBI nr
Match: XP_010250594.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Nelumbo nucifera])

HSP 1 Score: 78.6 bits (192), Expect = 3.9e-11
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 11 KQLTERKRSKELCFAEMVAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSL 69
          +Q  ++++ K +   EMVAKLT+VCWD+CITGTPGSKFSSSES CLSNC QRY   SL
Sbjct: 12 QQFLDQEKQKAM-VNEMVAKLTNVCWDKCITGTPGSKFSSSESTCLSNCAQRYMDMSL 68

[Close]

BLAST of Lcy13g007190 vs. TAIR 10
Match: AT5G50810.1 (translocase inner membrane subunit 8 )

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 26 EMVAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSLNDSKTVN 76
          EMV+K+TSVCWD+CIT  PGSKFSSSES+CL++C QRY   S+   K  N
Sbjct: 26 EMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCAQRYMDMSMIIMKRFN 75

[Close]

BLAST of Lcy13g007190 vs. TAIR 10
Match: AT1G61570.1 (translocase of the inner mitochondrial membrane 13 )

HSP 1 Score: 42.0 bits (97), Expect = 3.7e-04
Identity = 19/49 (38.78%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 26 EMVAKLTSVCWDECITGTPGSKFSSSESNCLSNCVQRYCSSSLNDSKTV 75
          E++  L + C+D+C+T  PGS    SES+C+S CV+RY  ++   S+++
Sbjct: 36 ELIETLRTKCFDKCVT-KPGSSLGGSESSCISRCVERYMEATAIISRSL 83

The following BLAST results are available for this feature:

BLAST of Lcy13g007190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XGY4	3.1e-11	64.00	Mitochondrial import inner membrane translocase subunit TIM8 OS=Arabidopsis thal...	[more]
P0CR95	3.9e-06	56.10	Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neo...	[more]
P0CR94	3.9e-06	56.10	Mitochondrial import inner membrane translocase subunit TIM8 OS=Cryptococcus neo...	[more]

BLAST of Lcy13g007190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IHF0	1.7e-12	86.36	Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3...	[more]
A0A6J1E0G1	1.7e-12	86.36	Mitochondrial import inner membrane translocase subunit OS=Cucurbita moschata OX...	[more]
A0A0A0LTY7	1.7e-12	86.36	Mitochondrial import inner membrane translocase subunit OS=Cucumis sativus OX=36...	[more]
A0A1S3CLD0	1.7e-12	86.36	Mitochondrial import inner membrane translocase subunit OS=Cucumis melo OX=3656 ...	[more]
A0A6J1C212	4.9e-12	84.09	Mitochondrial import inner membrane translocase subunit OS=Momordica charantia O...	[more]

BLAST of Lcy13g007190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464391.1	3.5e-12	86.36	PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Cucumis...	[more]
XP_022135207.1	1.0e-11	84.09	mitochondrial import inner membrane translocase subunit TIM8 [Momordica charanti...	[more]
KAG7023044.1	3.0e-11	81.82	Mitochondrial import inner membrane translocase subunit TIM8, partial [Cucurbita...	[more]
XP_022859995.1	3.0e-11	65.52	mitochondrial import inner membrane translocase subunit TIM8-like [Olea europaea...	[more]
XP_010250594.1	3.9e-11	65.52	PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Nelumbo...	[more]

BLAST of Lcy13g007190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50810.1	2.2e-12	64.00	translocase inner membrane subunit 8	[more]
AT1G61570.1	3.7e-04	38.78	translocase of the inner mitochondrial membrane 13	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004217	Tim10-like	PFAM	PF02953	zf-Tim10_DDP	coord: 24..68 e-value: 1.5E-14 score: 53.4
IPR035427	Tim10-like domain superfamily	GENE3D	1.10.287.810	Mitochondrial import inner membrane translocase subunit tim13 like domains	coord: 8..77 e-value: 1.6E-13 score: 52.1
IPR035427	Tim10-like domain superfamily	SUPERFAMILY	144122	Tim10-like	coord: 24..78
None	No IPR available	PANTHER	PTHR19338:SF15	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM8-LIKE	coord: 20..68
IPR039238	Mitochondrial import inner membrane translocase subunit Tim8/13	PANTHER	PTHR19338	TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG	coord: 20..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g007190.1	Lcy13g007190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005758	mitochondrial intermembrane space
molecular_function	GO:0046872	metal ion binding