Lcy13g007060 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g007060
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	auxin-regulated gene involved in organ size
Location	Chr13: 6479565 .. 6480013 (-)
RNA-Seq Expression	Lcy13g007060
Synteny	Lcy13g007060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCGCCGCCGCATAAATTGAAAATATAAATATTCGCCGCCGTCTTTGCCGGATTTTCTCTTCACTCACATTGCCGCCGCTCAGGGACATGATCCTATCTCCGATCGCTGGACGATTACTATGGTACGCTGCTTCAACTTAGTGTCCGTTCTCGTTCTCGCCGCCGTCGCGGTCTCCATGGTCGTGCTGCCGTTGGTTCTCCCGCCGCTGCCTCCGCCGCCGCTTGTCCTTCTCTTCTTTCCGGTCGGTATCATGGCGGCTCTCCTCCTCCTTGCGTTTTCTCCCGACGATATCGCCGTCGGAAACGTCGTCGTTTGACGGAAATCGACGAACATTGTGGCTTCCGGCGACCGGCGTTTTTTGTTTTTTTTTTTTAAGAACTAGAAATTTTTTAATATATTCGATGTAGAAAATGAAGGATGGAAGAAATGTGAAGAATATGAAAATG

mRNA sequence

TCTCCGCCGCCGCATAAATTGAAAATATAAATATTCGCCGCCGTCTTTGCCGGATTTTCTCTTCACTCACATTGCCGCCGCTCAGGGACATGATCCTATCTCCGATCGCTGGACGATTACTATGGTACGCTGCTTCAACTTAGTGTCCGTTCTCGTTCTCGCCGCCGTCGCGGTCTCCATGGTCGTGCTGCCGTTGGTTCTCCCGCCGCTGCCTCCGCCGCCGCTTGTCCTTCTCTTCTTTCCGGTCGGTATCATGGCGGCTCTCCTCCTCCTTGCGTTTTCTCCCGACGATATCGCCGTCGGAAACGTCGTCGTTTGACGGAAATCGACGAACATTGTGGCTTCCGGCGACCGGCGTTTTTTGTTTTTTTTTTTTAAGAACTAGAAATTTTTTAATATATTCGATGTAGAAAATGAAGGATGGAAGAAATGTGAAGAATATGAAAATG

Coding sequence (CDS)

ATGGTACGCTGCTTCAACTTAGTGTCCGTTCTCGTTCTCGCCGCCGTCGCGGTCTCCATGGTCGTGCTGCCGTTGGTTCTCCCGCCGCTGCCTCCGCCGCCGCTTGTCCTTCTCTTCTTTCCGGTCGGTATCATGGCGGCTCTCCTCCTCCTTGCGTTTTCTCCCGACGATATCGCCGTCGGAAACGTCGTCGTTTGA

Protein sequence

MVRCFNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSPDDIAVGNVVV

Homology

[Close]

BLAST of Lcy13g007060 vs. ExPASy Swiss-Prot
Match: C7SFP6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis OX=51351 GN=ARGOS PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-06
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 5   FNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSP 56
           F+L S+++L  +  S+++LPLVLPPLPPPP +LL  P+GIM  L++LAF P
Sbjct: 72  FSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMP 122

[Close]

BLAST of Lcy13g007060 vs. ExPASy Swiss-Prot
Match: Q8RXL7 (ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-06
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 5   FNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSP 56
           F+L S++VL  +  S+++LPL+LPPLPPPP +LL  P+GIM  L++LAF P
Sbjct: 71  FSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMP 121

[Close]

BLAST of Lcy13g007060 vs. ExPASy Swiss-Prot
Match: Q6NMD6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3702 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.1e-06
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 5   FNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSPDDIAVGNVV 64
           F+L S+ +L  +  S+++LPLVLPPLPPPP +LL  P+GIM  L++LAF P   +  N  
Sbjct: 65  FSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPSSHSNANTD 124

Query: 65  V 66
           V
Sbjct: 125 V 125

[Close]

BLAST of Lcy13g007060 vs. ExPASy Swiss-Prot
Match: Q7X6L2 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica OX=39947 GN=ARGOS PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-05
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 5   FNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSP 56
           F++ S+L+L  V  S+V+LPLVLPPLPPPP +L+  PV ++  LL LAF P
Sbjct: 100 FSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMP 150

[Close]

BLAST of Lcy13g007060 vs. ExPASy TrEMBL
Match: A0A7J7D881 (Putative transmembrane protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW09G00507 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1  MVRCFNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSPDDIAV 60
          MVRCF++ SV+VLAAVA SMVVLPL+LPPLPPPPL+LLFFPVGIM AL+ LAFSPD+I  
Sbjct: 1  MVRCFSIGSVIVLAAVAASMVVLPLILPPLPPPPLMLLFFPVGIMVALVFLAFSPDEITR 60

Query: 61 GNVVV 66
          GNVVV
Sbjct: 61 GNVVV 65

[Close]

BLAST of Lcy13g007060 vs. ExPASy TrEMBL
Match: A0A0L9UI81 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g004200 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-14
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1   MVRCFNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSPDDIAV 60
           MVRCF+L SVL+LAA+A SMVVLPL+LPPLPPPPLVLLFFPVGIMAAL+LLAFSP D   
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD--- 160

Query: 61  GNVVV 66
           GN VV
Sbjct: 161 GNGVV 162

[Close]

BLAST of Lcy13g007060 vs. ExPASy TrEMBL
Match: A0A0S3SKI1 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G232000 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.1e-14
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1   MVRCFNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSPDDIAV 60
           MVRCF+L SVL+LAA+A SMVVLPL+LPPLPPPPLVLLFFPVGIMAAL+LLAFSP D   
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD--- 160

Query: 61  GNVVV 66
           GN VV
Sbjct: 161 GNGVV 162

[Close]

BLAST of Lcy13g007060 vs. ExPASy TrEMBL
Match: V7BSD6 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G025500g PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.0e-14
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MVRCFNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSPDD 58
          MVRCF+L SVL+LAA+A SMVVLPL+LPPLPPPPLVLLFFPVGIMAAL+LLAFSP D
Sbjct: 1  MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 57

[Close]

BLAST of Lcy13g007060 vs. ExPASy TrEMBL
Match: A0A7J7C5A3 (Putative transmembrane protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21G01494 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.9e-14
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MVRCFNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSPDDIAV 60
          MVRCF++  V+VL  VA SMVVLPL+LPPLPPPPL+LLFFPVGIMAAL+ LAFSPD++  
Sbjct: 1  MVRCFSIGRVIVLVTVAASMVVLPLILPPLPPPPLMLLFFPVGIMAALMFLAFSPDEVTR 60

Query: 61 GNVVV 66
          GNV +
Sbjct: 61 GNVAM 65

[Close]

BLAST of Lcy13g007060 vs. NCBI nr
Match: KAG6601123.1 (Transcription factor IIIA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MVRCFNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSPDDIAV 60
           MVRCFNLVS+ VLAAVAVSMVVL LVLPPLPPPP+VLLFFPVG+MAALL+LAFSP D+ V
Sbjct: 321 MVRCFNLVSIFVLAAVAVSMVVLRLVLPPLPPPPIVLLFFPVGLMAALLILAFSPSDVGV 380

Query: 61  GN 63
            N
Sbjct: 381 DN 382

[Close]

BLAST of Lcy13g007060 vs. NCBI nr
Match: KAF5742459.1 (putative transmembrane protein [Tripterygium wilfordii])

HSP 1 Score: 91.7 bits (226), Expect = 2.6e-15
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1  MVRCFNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSPDDIAV 60
          MVRCF++ SV+VLAAVA SMVVLPL+LPPLPPPPL+LLFFPVGIM AL+ LAFSPD+I  
Sbjct: 1  MVRCFSIGSVIVLAAVAASMVVLPLILPPLPPPPLMLLFFPVGIMVALVFLAFSPDEITR 60

Query: 61 GNVVV 66
          GNVVV
Sbjct: 61 GNVVV 65

[Close]

BLAST of Lcy13g007060 vs. NCBI nr
Match: KAG2372512.1 (uncharacterized protein HKW66_Vig0206190 [Vigna angularis] >KOM42438.1 hypothetical protein LR48_Vigan05g004200 [Vigna angularis] >BAT93370.1 hypothetical protein VIGAN_07232000 [Vigna angularis var. angularis])

HSP 1 Score: 87.0 bits (214), Expect = 6.3e-14
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1   MVRCFNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSPDDIAV 60
           MVRCF+L SVL+LAA+A SMVVLPL+LPPLPPPPLVLLFFPVGIMAAL+LLAFSP D   
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD--- 160

Query: 61  GNVVV 66
           GN VV
Sbjct: 161 GNGVV 162

[Close]

BLAST of Lcy13g007060 vs. NCBI nr
Match: XP_007148923.1 (hypothetical protein PHAVU_005G025500g [Phaseolus vulgaris] >ESW20917.1 hypothetical protein PHAVU_005G025500g [Phaseolus vulgaris])

HSP 1 Score: 86.7 bits (213), Expect = 8.3e-14
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MVRCFNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSPDD 58
          MVRCF+L SVL+LAA+A SMVVLPL+LPPLPPPPLVLLFFPVGIMAAL+LLAFSP D
Sbjct: 1  MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 57

[Close]

BLAST of Lcy13g007060 vs. NCBI nr
Match: KAF5729329.1 (putative transmembrane protein [Tripterygium wilfordii])

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MVRCFNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSPDDIAV 60
          MVRCF++  V+VL  VA SMVVLPL+LPPLPPPPL+LLFFPVGIMAAL+ LAFSPD++  
Sbjct: 1  MVRCFSIGRVIVLVTVAASMVVLPLILPPLPPPPLMLLFFPVGIMAALMFLAFSPDEVTR 60

Query: 61 GNVVV 66
          GNV +
Sbjct: 61 GNVAM 65

[Close]

BLAST of Lcy13g007060 vs. TAIR 10
Match: AT2G44080.1 (ARGOS-like )

HSP 1 Score: 53.1 bits (126), Expect = 9.5e-08
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 5   FNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSP 56
           F+L S++VL  +  S+++LPL+LPPLPPPP +LL  P+GIM  L++LAF P
Sbjct: 71  FSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMP 121

[Close]

BLAST of Lcy13g007060 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 51.2 bits (121), Expect = 3.6e-07
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 5   FNLVSVLVLAAVAVSMVVLPLVLPPLPPPPLVLLFFPVGIMAALLLLAFSPDDIAVGNVV 64
           F+L S+ +L  +  S+++LPLVLPPLPPPP +LL  P+GIM  L++LAF P   +  N  
Sbjct: 65  FSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPSSHSNANTD 124

Query: 65  V 66
           V
Sbjct: 125 V 125

The following BLAST results are available for this feature:

BLAST of Lcy13g007060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C7SFP6	1.3e-06	54.90	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
Q8RXL7	1.3e-06	54.90	ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1	[more]
Q6NMD6	5.1e-06	49.18	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana OX=3...	[more]
Q7X6L2	3.3e-05	54.90	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]

BLAST of Lcy13g007060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7D881	1.2e-15	80.00	Putative transmembrane protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW09...	[more]
A0A0L9UI81	3.1e-14	81.54	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g004200 PE...	[more]
A0A0S3SKI1	3.1e-14	81.54	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G...	[more]
V7BSD6	4.0e-14	85.96	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G025500g PE=4 ...	[more]
A0A7J7C5A3	8.9e-14	72.31	Putative transmembrane protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW21...	[more]

BLAST of Lcy13g007060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601123.1	1.2e-15	83.87	Transcription factor IIIA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAF5742459.1	2.6e-15	80.00	putative transmembrane protein [Tripterygium wilfordii]	[more]
KAG2372512.1	6.3e-14	81.54	uncharacterized protein HKW66_Vig0206190 [Vigna angularis] >KOM42438.1 hypotheti...	[more]
XP_007148923.1	8.3e-14	85.96	hypothetical protein PHAVU_005G025500g [Phaseolus vulgaris] >ESW20917.1 hypothet...	[more]
KAF5729329.1	1.8e-13	72.31	putative transmembrane protein [Tripterygium wilfordii]	[more]

BLAST of Lcy13g007060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44080.1	9.5e-08	54.90	ARGOS-like	[more]
AT3G59900.1	3.6e-07	49.18	auxin-regulated gene involved in organ size	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38928	ARGOS7	coord: 1..64
None	No IPR available	PANTHER	PTHR38928:SF5	PROTEIN, PUTATIVE-RELATED	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g007060.1	Lcy13g007060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane