Lcy13g006840 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g006840
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionzf-RVT domain-containing protein
LocationChr13: 6166838 .. 6167102 (+)
RNA-Seq ExpressionLcy13g006840
SyntenyLcy13g006840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCAAGTAGCATCGAGTGGTATGTTTAATATATATTCCAGCCGCCATCAATCTTTGGTCGCACCATGTTCCGGTCGAAGGAATTTGCTCATTATGTTCGAAAGTTCCAGAAACCACAGATCATGCTCTTTTCCATTGTCATAGAGCAAAGGAGGTTTGGACAGGGATGAATATCGAGGTTGATGTTGGCTGGAATGTTGAGATGGATATCAAAGATAAATGGTTACATTTTAGCTCTCCTGTGTCTACAGAAGTTTTTTAA

mRNA sequence

ATGTGTCAAGTAGCATCGAGTGCCGCCATCAATCTTTGGTCGCACCATGTTCCGGTCGAAGGAATTTGCTCATTATGTTCGAAAGTTCCAGAAACCACAGATCATGCTCTTTTCCATTGTCATAGAGCAAAGGAGGTTTGGACAGGGATGAATATCGAGGTTGATGTTGGCTGGAATGTTGAGATGGATATCAAAGATAAATGGTTACATTTTAGCTCTCCTGTGTCTACAGAAGTTTTTTAA

Coding sequence (CDS)

ATGTGTCAAGTAGCATCGAGTGCCGCCATCAATCTTTGGTCGCACCATGTTCCGGTCGAAGGAATTTGCTCATTATGTTCGAAAGTTCCAGAAACCACAGATCATGCTCTTTTCCATTGTCATAGAGCAAAGGAGGTTTGGACAGGGATGAATATCGAGGTTGATGTTGGCTGGAATGTTGAGATGGATATCAAAGATAAATGGTTACATTTTAGCTCTCCTGTGTCTACAGAAGTTTTTTAA

Protein sequence

MCQVASSAAINLWSHHVPVEGICSLCSKVPETTDHALFHCHRAKEVWTGMNIEVDVGWNVEMDIKDKWLHFSSPVSTEVF
Homology
BLAST of Lcy13g006840 vs. ExPASy TrEMBL
Match: A0A7J6HXN5 (zf-RVT domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_021140 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.3e-05
Identity = 26/72 (36.11%), Postives = 38/72 (52.78%), Query Frame = 0

Query: 9   AINLWSHHVPVEGICSLCSKVPETTDHALFHCHRAKEVWTGMNIEVDVGWNVEMDIKDKW 68
           A +L+  H+     CS+C+   ET +HALF+C RAK VW   N+ ++     +    D  
Sbjct: 132 AADLYRRHIATSPYCSICNSCEETINHALFYCPRAKSVWELSNLRINFPTLGQSSGADIL 191

Query: 69  LHFSSPVSTEVF 81
           L  SS +ST  F
Sbjct: 192 LQLSSTLSTPDF 203

BLAST of Lcy13g006840 vs. ExPASy TrEMBL
Match: A0A803P5E3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 24/75 (32.00%), Postives = 38/75 (50.67%), Query Frame = 0

Query: 3   QVASSAAINLWSHHVPVEGICSLCSKVPETTDHALFHCHRAKEVWTGMNIEVDVGWNVEM 62
           QV       L + H+    +CSLC +  +T  HALFHC R ++ W   N  +D   +  +
Sbjct: 78  QVCLPVLDTLHTRHISDTSLCSLCHREKDTIIHALFHCKRPRKFWKLSNFSIDSLLSTHV 137

Query: 63  DIKDKWLHFSSPVST 78
            +K+  +H S+  ST
Sbjct: 138 SLKELMIHVSTIWST 152

BLAST of Lcy13g006840 vs. ExPASy TrEMBL
Match: A0A803Q2K8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.7e-04
Identity = 25/72 (34.72%), Postives = 37/72 (51.39%), Query Frame = 0

Query: 9    AINLWSHHVPVEGICSLCSKVPETTDHALFHCHRAKEVWTGMNIEVDVGWNVEMDIKDKW 68
            A  L+  H+     CS+C+   E+ +HALF C RAK VW   ++ +D     +    D  
Sbjct: 1437 AAELFRRHIATSPHCSICNSAEESINHALFDCPRAKAVWELSSLHIDFHTLRQSASADIL 1496

Query: 69   LHFSSPVSTEVF 81
            LH S+ +ST  F
Sbjct: 1497 LHLSTALSTSEF 1508

BLAST of Lcy13g006840 vs. ExPASy TrEMBL
Match: A0A443N980 (Reverse transcriptase zinc-binding domain-containing protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00346400 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 20/67 (29.85%), Postives = 36/67 (53.73%), Query Frame = 0

Query: 11  NLWSHHVPVEGICSLCSKVPETTDHALFHCHRAKEVWTGMNIEVDVGWNVEMDIKDKWLH 70
           NL   H+ +   C LC    E+ DH LFHC + + +W+ +  E +  W +   I+D +  
Sbjct: 134 NLRLRHILLVNACPLCLADEESVDHLLFHCKQMRALWSAILYEFNCSWVMSQSIQDLFHQ 193

Query: 71  FSSPVST 78
           +++P+ T
Sbjct: 194 WATPIYT 200

BLAST of Lcy13g006840 vs. NCBI nr
Match: XP_030964645.1 (uncharacterized protein LOC115985893 [Quercus lobata])

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 21/54 (38.89%), Postives = 30/54 (55.56%), Query Frame = 0

Query: 2   CQVASSAAINLWSHHVPVEGICSLCSKVPETTDHALFHCHRAKEVWTGMNIEVD 56
           C+       NL+   +  + IC +C    ETT H L+HCHRAKEVW  + ++ D
Sbjct: 820 CRNILPTKANLFRRKITPDSICEVCGNFEETTSHVLWHCHRAKEVWKEVGLDTD 873

BLAST of Lcy13g006840 vs. NCBI nr
Match: KAF4399926.1 (hypothetical protein G4B88_021140 [Cannabis sativa])

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 26/72 (36.11%), Postives = 38/72 (52.78%), Query Frame = 0

Query: 9   AINLWSHHVPVEGICSLCSKVPETTDHALFHCHRAKEVWTGMNIEVDVGWNVEMDIKDKW 68
           A +L+  H+     CS+C+   ET +HALF+C RAK VW   N+ ++     +    D  
Sbjct: 132 AADLYRRHIATSPYCSICNSCEETINHALFYCPRAKSVWELSNLRINFPTLGQSSGADIL 191

Query: 69  LHFSSPVSTEVF 81
           L  SS +ST  F
Sbjct: 192 LQLSSTLSTPDF 203

BLAST of Lcy13g006840 vs. NCBI nr
Match: XP_013607455.1 (PREDICTED: uncharacterized protein LOC106314053 [Brassica oleracea var. oleracea])

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-04
Identity = 22/62 (35.48%), Postives = 36/62 (58.06%), Query Frame = 0

Query: 12  LWSHHVPVEGICSLCSKVPETTDHALFHCHRAKEVWTGMNIEVDVGWNVEMDIKDKWLHF 71
           L + H+ VEG C  C+ +PE+ DH  FHC  AK++WT   +   + +N  +D +  W+  
Sbjct: 405 LRARHINVEGKCKRCN-MPESIDHLFFHCSYAKQIWTSSPVSPRIEYNECIDSRSLWISV 464

Query: 72  SS 74
           S+
Sbjct: 465 ST 465

BLAST of Lcy13g006840 vs. NCBI nr
Match: XP_030509188.1 (uncharacterized protein LOC115723863 [Cannabis sativa])

HSP 1 Score: 54.3 bits (129), Expect = 5.6e-04
Identity = 25/72 (34.72%), Postives = 37/72 (51.39%), Query Frame = 0

Query: 9    AINLWSHHVPVEGICSLCSKVPETTDHALFHCHRAKEVWTGMNIEVDVGWNVEMDIKDKW 68
            A  L+  H+     CS+C+   E+ +HALF C RAK VW   ++ +D     +    D  
Sbjct: 1038 AAELFRRHIATSPHCSICNSAEESINHALFDCPRAKAVWELSSLHIDFHTLRQSASADIL 1097

Query: 69   LHFSSPVSTEVF 81
            LH S+ +ST  F
Sbjct: 1098 LHLSTALSTSEF 1109

BLAST of Lcy13g006840 vs. NCBI nr
Match: XP_030505006.1 (uncharacterized protein LOC115719977 [Cannabis sativa])

HSP 1 Score: 54.3 bits (129), Expect = 5.6e-04
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 0

Query: 4  VASSAAINLWSHHVPVEGICSLCSKVPETTDHALFHCHRAKEVWTGMNIEVDV 57
          +A   A+ L   H+  + +C LC    ETT+HALF   RAKEVW  +N+++D+
Sbjct: 1  MALPVAVELHRRHIAADSLCPLCRSHTETTNHALFFHKRAKEVWRLLNLQIDL 53

BLAST of Lcy13g006840 vs. TAIR 10
Match: AT3G25720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 40.4 bits (93), Expect = 7.8e-04
Identity = 15/34 (44.12%), Postives = 21/34 (61.76%), Query Frame = 0

Query: 17  VPVEGICSLCSKVPETTDHALFHCHRAKEVWTGM 51
           +PV  +C LCS  PET DH L  C  +K +W+ +
Sbjct: 156 LPVSPLCCLCSCAPETRDHLLLGCSFSKALWSSV 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J6HXN59.3e-0536.11zf-RVT domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_021140 PE=4... [more]
A0A803P5E32.1e-0432.00Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q2K82.7e-0434.72Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A443N9806.1e-0429.85Reverse transcriptase zinc-binding domain-containing protein OS=Cinnamomum micra... [more]
Match NameE-valueIdentityDescription
XP_030964645.11.9e-0438.89uncharacterized protein LOC115985893 [Quercus lobata][more]
KAF4399926.11.9e-0436.11hypothetical protein G4B88_021140 [Cannabis sativa][more]
XP_013607455.13.3e-0435.48PREDICTED: uncharacterized protein LOC106314053 [Brassica oleracea var. oleracea... [more]
XP_030509188.15.6e-0434.72uncharacterized protein LOC115723863 [Cannabis sativa][more]
XP_030505006.15.6e-0441.51uncharacterized protein LOC115719977 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
AT3G25720.17.8e-0444.12RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 8..47
e-value: 1.4E-7
score: 32.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g006840.1Lcy13g006840.1mRNA