Lcy13g006840 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGTCAAGTAGCATCGAGTGGTATGTTTAATATATATTCCAGCCGCCATCAATCTTTGGTCGCACCATGTTCCGGTCGAAGGAATTTGCTCATTATGTTCGAAAGTTCCAGAAACCACAGATCATGCTCTTTTCCATTGTCATAGAGCAAAGGAGGTTTGGACAGGGATGAATATCGAGGTTGATGTTGGCTGGAATGTTGAGATGGATATCAAAGATAAATGGTTACATTTTAGCTCTCCTGTGTCTACAGAAGTTTTTTAA ATGTGTCAAGTAGCATCGAGTGCCGCCATCAATCTTTGGTCGCACCATGTTCCGGTCGAAGGAATTTGCTCATTATGTTCGAAAGTTCCAGAAACCACAGATCATGCTCTTTTCCATTGTCATAGAGCAAAGGAGGTTTGGACAGGGATGAATATCGAGGTTGATGTTGGCTGGAATGTTGAGATGGATATCAAAGATAAATGGTTACATTTTAGCTCTCCTGTGTCTACAGAAGTTTTTTAA ATGTGTCAAGTAGCATCGAGTGCCGCCATCAATCTTTGGTCGCACCATGTTCCGGTCGAAGGAATTTGCTCATTATGTTCGAAAGTTCCAGAAACCACAGATCATGCTCTTTTCCATTGTCATAGAGCAAAGGAGGTTTGGACAGGGATGAATATCGAGGTTGATGTTGGCTGGAATGTTGAGATGGATATCAAAGATAAATGGTTACATTTTAGCTCTCCTGTGTCTACAGAAGTTTTTTAA MCQVASSAAINLWSHHVPVEGICSLCSKVPETTDHALFHCHRAKEVWTGMNIEVDVGWNVEMDIKDKWLHFSSPVSTEVF Homology
BLAST of Lcy13g006840 vs. ExPASy TrEMBL
Match: A0A7J6HXN5 (zf-RVT domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_021140 PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 9.3e-05 Identity = 26/72 (36.11%), Postives = 38/72 (52.78%), Query Frame = 0
BLAST of Lcy13g006840 vs. ExPASy TrEMBL
Match: A0A803P5E3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04 Identity = 24/75 (32.00%), Postives = 38/75 (50.67%), Query Frame = 0
BLAST of Lcy13g006840 vs. ExPASy TrEMBL
Match: A0A803Q2K8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 2.7e-04 Identity = 25/72 (34.72%), Postives = 37/72 (51.39%), Query Frame = 0
BLAST of Lcy13g006840 vs. ExPASy TrEMBL
Match: A0A443N980 (Reverse transcriptase zinc-binding domain-containing protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00346400 PE=4 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04 Identity = 20/67 (29.85%), Postives = 36/67 (53.73%), Query Frame = 0
BLAST of Lcy13g006840 vs. NCBI nr
Match: XP_030964645.1 (uncharacterized protein LOC115985893 [Quercus lobata]) HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04 Identity = 21/54 (38.89%), Postives = 30/54 (55.56%), Query Frame = 0
BLAST of Lcy13g006840 vs. NCBI nr
Match: KAF4399926.1 (hypothetical protein G4B88_021140 [Cannabis sativa]) HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04 Identity = 26/72 (36.11%), Postives = 38/72 (52.78%), Query Frame = 0
BLAST of Lcy13g006840 vs. NCBI nr
Match: XP_013607455.1 (PREDICTED: uncharacterized protein LOC106314053 [Brassica oleracea var. oleracea]) HSP 1 Score: 55.1 bits (131), Expect = 3.3e-04 Identity = 22/62 (35.48%), Postives = 36/62 (58.06%), Query Frame = 0
BLAST of Lcy13g006840 vs. NCBI nr
Match: XP_030509188.1 (uncharacterized protein LOC115723863 [Cannabis sativa]) HSP 1 Score: 54.3 bits (129), Expect = 5.6e-04 Identity = 25/72 (34.72%), Postives = 37/72 (51.39%), Query Frame = 0
BLAST of Lcy13g006840 vs. NCBI nr
Match: XP_030505006.1 (uncharacterized protein LOC115719977 [Cannabis sativa]) HSP 1 Score: 54.3 bits (129), Expect = 5.6e-04 Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 0
BLAST of Lcy13g006840 vs. TAIR 10
Match: AT3G25720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 40.4 bits (93), Expect = 7.8e-04 Identity = 15/34 (44.12%), Postives = 21/34 (61.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
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