Lcy13g006540 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g006540
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr13: 5826367 .. 5828838 (+)
RNA-Seq Expression	Lcy13g006540
Synteny	Lcy13g006540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTCCTTCTTCATTCCAATCGATAGGAAATATGCATCTGTGGCCATCTACAAGGATCAGAGACTCTTTCAAGCATGGTTACATCAAAAAGCTCGAATGGAACCTCCATAGAATGAAAATCCAAAAGCACCAGCAGCAGCAATCTTCGAGCAAACAGAACTTGCTGGACAAAGAACAAGCTTCTGATGTCAACGCCGAAACTGCAGAAAAATCCAATTCAGTTTCGTTTGGTCAAAGAGTACTTGAATTCTGCTCAGAAGTCCTCATGCTTCTCTCCTGTTGTTACTGCTGCTATTGCTGCGGAGGTGATCATTTCTTCTTTCCCCTTTTCAGATCGTCTCCATTTATAATGAGATTTTACTGGAATTCAAGTTCGTAAATGCTGTACGATCATCATCTGAAAATCGTTGTTGCGTAAGTTTTTCGGATTAGGTCTGATTTTAACTGCAGAAGAGCACTGATCTTCAATTTTGGGTTTGAAATGTCTTTGATAGCTTCAATAGTTGGGACTGACGATTTTGGTTGTGTTTGGTTGTTGTGTTTGGTGGTTGTTGTAAAATTTCGTAAGTCTAAGTGGTGATCGAACAAATTGAAAGTCAAAAGGTAATTTCCTTTCTAGTTCATGCCATGTTTTCTCTGCCATGCTTTCTTTTAAAGCTTGAATGAGGCTTGAAAGTGATGCAGTAGTTCTTAAAATTTCTAAAATCTTCAAGAGGGGATTTCAGTTTTGCGACTGAGAAAGAAGTTCTGAAAACTTGTTATAGTTTTCTCATTTGAAATGGTAGTCTAGGGACAAGGAAGCTTTGAATGCTTGAATGGCTGTGATTCTGAAAATTTGCACTGGAACAAGCCTGCTTAAAAGTTTCCTGTTAAAAGGAAAAACCTACAGAAAATATTTCTGCCTTGCAATTGTTATCTAATCTAGTTCTAAAAAGCAGAAAATTCCCAGTGCTGTACTGGCTTTTACTTGGTTGAAGAGTTTGGGATTTTGTTCCTTTGATGAACTTCAATTGAATAAATGTTTGATATCGTCAACCGTTGTTTGTTAGGCAGCGATGTTGCTGTTGGTTAGCTAATTGCAAAAGTCGAGAGTGATAGACTGCAGCTAGATATGTTGAATTATCTATTATTAAACCACCACTAGATCTAACAATTTTAGCAAAATCTTAAGTTTAAGCTAGTTTGAAGTTTATTAAACCAGCACTCGATCTAACAATTCGAATTTTAGCATGAGACCCATCAAATGATATTTATTGGAGAAGAATTACAATAGTTTGAAGTTTGAGCATAAAACCTTTTGTTGCGAATTGGGGGTGTAACCAAAGTCCCACATTGGCTAGATAAGGGGATGATCATGGGTTTAGGGGGACAAGTATCTCCATTGGTATGAGACCTTTTGGGTGGAACCAAAAGCAAAGCCATGAGGGCTTCTGCCCAAAGTGGACAATATCGTACCATTATGGAGATTTGTACCGTGTCCTCGTCCTTAACACCTTTTATTATGATATATTGTTTAGTTACCGCTAGACCCAAAAGCTTAAGCTATAAATTAGGGTGTATTCAATTTAGTTTAACAACTTTATCTCATCTCTTATTGTATTTTTGTTTCAGTCTAACCTTGATTTTAGTCATTAGCACTTTACAATCTCTTGCTTTTTATTTGCATTTGTTTTAGTTCATCATGTGCCTTTTGATTGAGAATATATGTCTTAACCAGTTGAGCTATATTTAGGTTGACCTTCTGCTTCTTAGTTTTATGTTTCTCCACATTCTTTTAATACGAACCGGTCATTATAGTCTTTGAACTTTTCAGTAATTCCAAATTTGTTAGGCTTATATCGGGCATTACAATACTGAAATTTCATAACTCATACTGGCGAAAATCATGCGTACCCTTAACAATTACGTCTCGAACTTACAACTTTCTTTAAGCACCAATCTGTGGCAAGATAGAGACTGTCTGTCCTCCTTACATTCATCTTCTATCATGAAATCCTGATTCATTATGGATAGAAAATTCATAGTAAAAGTGTGCAGATAGAGACTCTTACAAACATCTGACATAAGCATCATGCTCTCGCAGTTTGCCTCTCCGAAGAAGAAGAACATTGATGCTGATGTAGAGGGTAGATGCTTGGAATTGATAAAGGCAACTGATTGATGCAGATGATATTTACAGTATCTGTATTGTAGCCTAATCATGTACAGGTAATCCTAGCATTAATGATCATTGGTATATATTGATATTGATCTCCTTTTCTGTTCATTTTGTTGATGATATTGTTGAACAGATAACTACTTTTCTGTTCATTGGTATATATTGATTAGGAAGTTGAACATATGTTTGATATGTGGATTTGTTTATTTTAGGCTATGAGTTTATTGGTTTCGCAAGTTATAAACGTACCTTTTAACTTTTAGAAACCATACATGTATTAGATAACACTAAGTTACACAAATTTAGATTTTTA

mRNA sequence

CTCTTCCTTCTTCATTCCAATCGATAGGAAATATGCATCTGTGGCCATCTACAAGGATCAGAGACTCTTTCAAGCATGGTTACATCAAAAAGCTCGAATGGAACCTCCATAGAATGAAAATCCAAAAGCACCAGCAGCAGCAATCTTCGAGCAAACAGAACTTGCTGGACAAAGAACAAGCTTCTGATGTCAACGCCGAAACTGCAGAAAAATCCAATTCAGTTTCGTTTGGTCAAAGAGTACTTGAATTCTGCTCAGAAGTCCTCATGCTTCTCTCCTGTTGTTACTGCTGCTATTGCTGCGGAGTTTGCCTCTCCGAAGAAGAAGAACATTGATGCTGATGTAGAGGGTAGATGCTTGGAATTGATAAAGGCAACTGATTGATGCAGATGATATTTACAGTATCTGTATTGTAGCCTAATCATGTACAGGTAATCCTAGCATTAATGATCATTGGTATATATTGATATTGATCTCCTTTTCTGTTCATTTTGTTGATGATATTGTTGAACAGATAACTACTTTTCTGTTCATTGGTATATATTGATTAGGAAGTTGAACATATGTTTGATATGTGGATTTGTTTATTTTAGGCTATGAGTTTATTGGTTTCGCAAGTTATAAACGTACCTTTTAACTTTTAGAAACCATACATGTATTAGATAACACTAAGTTACACAAATTTAGATTTTTA

Coding sequence (CDS)

ATGCATCTGTGGCCATCTACAAGGATCAGAGACTCTTTCAAGCATGGTTACATCAAAAAGCTCGAATGGAACCTCCATAGAATGAAAATCCAAAAGCACCAGCAGCAGCAATCTTCGAGCAAACAGAACTTGCTGGACAAAGAACAAGCTTCTGATGTCAACGCCGAAACTGCAGAAAAATCCAATTCAGTTTCGTTTGGTCAAAGAGTACTTGAATTCTGCTCAGAAGTCCTCATGCTTCTCTCCTGTTGTTACTGCTGCTATTGCTGCGGAGTTTGCCTCTCCGAAGAAGAAGAACATTGA

Protein sequence

MHLWPSTRIRDSFKHGYIKKLEWNLHRMKIQKHQQQQSSSKQNLLDKEQASDVNAETAEKSNSVSFGQRVLEFCSEVLMLLSCCYCCYCCGVCLSEEEEH

Homology

[Close]

BLAST of Lcy13g006540 vs. ExPASy TrEMBL
Match: A0A6J1CC78 (uncharacterized protein LOC111010237 OS=Momordica charantia OX=3673 GN=LOC111010237 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.4e-42
Identity = 86/100 (86.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1   MHLWPSTRIRDSFKHGYIKKLEWNLHRMKIQKHQQQQSSSKQNLLDKEQASDVNAETAEK 60
           MHLWPSTRIRDSFKH YIKKLEWNLHRMKIQK QQQQSSSKQNLLDKEQASD + ETAE 
Sbjct: 1   MHLWPSTRIRDSFKHAYIKKLEWNLHRMKIQKQQQQQSSSKQNLLDKEQASDADGETAEN 60

Query: 61  SNSVSFGQRVLEFCSEVLMLLSCCYCCYCCGVCLSEEEEH 101
           +N VSFG RVL+FCSE L+LLSCCYCCYCCG CLSE+EEH
Sbjct: 61  TNLVSFGGRVLDFCSEALLLLSCCYCCYCCGACLSEDEEH 100

[Close]

BLAST of Lcy13g006540 vs. ExPASy TrEMBL
Match: A0A6J1G1K0 (uncharacterized protein LOC111449839 OS=Cucurbita moschata OX=3662 GN=LOC111449839 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.9e-41
Identity = 84/100 (84.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MHLWPSTRIRDSFKHGYIKKLEWNLHRMKIQKHQQQQSSSKQNLLDKEQASDVNAETAEK 60
           MHLWPSTRIRDSFK  YI+KLEWN+HRMKIQKHQQQQSSSKQNLLDK+Q+SD + ET+ K
Sbjct: 1   MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQQQSSSKQNLLDKQQSSDADGETSGK 60

Query: 61  SNSVSFGQRVLEFCSEVLMLLSCCYCCYCCGVCLSEEEEH 101
           S+SVSFG RVLEFCSEVL+LLSCCYCCYCCG CLSEEEE+
Sbjct: 61  SSSVSFGHRVLEFCSEVLLLLSCCYCCYCCGACLSEEEEN 100

[Close]

BLAST of Lcy13g006540 vs. ExPASy TrEMBL
Match: A0A6J1HPM3 (uncharacterized protein LOC111466560 OS=Cucurbita maxima OX=3661 GN=LOC111466560 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.7e-41
Identity = 83/100 (83.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MHLWPSTRIRDSFKHGYIKKLEWNLHRMKIQKHQQQQSSSKQNLLDKEQASDVNAETAEK 60
           MHLWPSTRIRDSFK  YI+KLEWN+HRMKIQKHQQQQSSSKQNLLDK+Q+SD + ET+ K
Sbjct: 1   MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQQQSSSKQNLLDKQQSSDADVETSGK 60

Query: 61  SNSVSFGQRVLEFCSEVLMLLSCCYCCYCCGVCLSEEEEH 101
           S+S+SFG RVLEFCSEVL+LLSCCYCCYCCG CLSEEEE+
Sbjct: 61  SSSISFGHRVLEFCSEVLLLLSCCYCCYCCGACLSEEEEN 100

[Close]

BLAST of Lcy13g006540 vs. ExPASy TrEMBL
Match: A0A0A0KRM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623370 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.8e-33
Identity = 78/92 (84.78%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MHLWPSTRIRDSFKHGYIKKLEWNLHRMKIQKHQQQQSSSKQNLLDKEQASD-VNAETAE 60
          MHLWPSTRIRDSFKH YIKKLEWNLHRMKIQKH Q QSSSKQNLLDKE+ASD  +AET+E
Sbjct: 1  MHLWPSTRIRDSFKHAYIKKLEWNLHRMKIQKH-QHQSSSKQNLLDKEEASDAADAETSE 60

Query: 61 KSNSVSFGQRVLEFCSEVLMLLSCCYCCYCCG 92
           S SVSFGQRVLEF SE+  LLSCCYCCYCCG
Sbjct: 61 PSPSVSFGQRVLEFFSELFHLLSCCYCCYCCG 91

[Close]

BLAST of Lcy13g006540 vs. ExPASy TrEMBL
Match: A0A5A7SU31 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007460 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.8e-32
Identity = 76/92 (82.61%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MHLWPSTRIRDSFKHGYIKKLEWNLHRMKIQKHQQQQSSSKQNLLDKEQASD-VNAETAE 60
          MHLWPSTRIRDSFKH YIKKLEWNLHRMKIQKH Q QSSSKQNLLDKE  SD  + ET++
Sbjct: 1  MHLWPSTRIRDSFKHAYIKKLEWNLHRMKIQKH-QHQSSSKQNLLDKENVSDAADGETSD 60

Query: 61 KSNSVSFGQRVLEFCSEVLMLLSCCYCCYCCG 92
          +S SVSFGQRVLEF SE+L LLSCCYCCYCCG
Sbjct: 61 RSPSVSFGQRVLEFFSELLHLLSCCYCCYCCG 91

[Close]

BLAST of Lcy13g006540 vs. NCBI nr
Match: XP_022139281.1 (uncharacterized protein LOC111010237 [Momordica charantia])

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 86/100 (86.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1   MHLWPSTRIRDSFKHGYIKKLEWNLHRMKIQKHQQQQSSSKQNLLDKEQASDVNAETAEK 60
           MHLWPSTRIRDSFKH YIKKLEWNLHRMKIQK QQQQSSSKQNLLDKEQASD + ETAE 
Sbjct: 1   MHLWPSTRIRDSFKHAYIKKLEWNLHRMKIQKQQQQQSSSKQNLLDKEQASDADGETAEN 60

Query: 61  SNSVSFGQRVLEFCSEVLMLLSCCYCCYCCGVCLSEEEEH 101
           +N VSFG RVL+FCSE L+LLSCCYCCYCCG CLSE+EEH
Sbjct: 61  TNLVSFGGRVLDFCSEALLLLSCCYCCYCCGACLSEDEEH 100

[Close]

BLAST of Lcy13g006540 vs. NCBI nr
Match: XP_022945676.1 (uncharacterized protein LOC111449839 [Cucurbita moschata])

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40
Identity = 84/100 (84.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MHLWPSTRIRDSFKHGYIKKLEWNLHRMKIQKHQQQQSSSKQNLLDKEQASDVNAETAEK 60
           MHLWPSTRIRDSFK  YI+KLEWN+HRMKIQKHQQQQSSSKQNLLDK+Q+SD + ET+ K
Sbjct: 1   MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQQQSSSKQNLLDKQQSSDADGETSGK 60

Query: 61  SNSVSFGQRVLEFCSEVLMLLSCCYCCYCCGVCLSEEEEH 101
           S+SVSFG RVLEFCSEVL+LLSCCYCCYCCG CLSEEEE+
Sbjct: 61  SSSVSFGHRVLEFCSEVLLLLSCCYCCYCCGACLSEEEEN 100

[Close]

BLAST of Lcy13g006540 vs. NCBI nr
Match: XP_022967037.1 (uncharacterized protein LOC111466560 [Cucurbita maxima])

HSP 1 Score: 176.0 bits (445), Expect = 1.6e-40
Identity = 83/100 (83.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MHLWPSTRIRDSFKHGYIKKLEWNLHRMKIQKHQQQQSSSKQNLLDKEQASDVNAETAEK 60
           MHLWPSTRIRDSFK  YI+KLEWN+HRMKIQKHQQQQSSSKQNLLDK+Q+SD + ET+ K
Sbjct: 1   MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQQQSSSKQNLLDKQQSSDADVETSGK 60

Query: 61  SNSVSFGQRVLEFCSEVLMLLSCCYCCYCCGVCLSEEEEH 101
           S+S+SFG RVLEFCSEVL+LLSCCYCCYCCG CLSEEEE+
Sbjct: 61  SSSISFGHRVLEFCSEVLLLLSCCYCCYCCGACLSEEEEN 100

[Close]

BLAST of Lcy13g006540 vs. NCBI nr
Match: XP_023541224.1 (uncharacterized protein LOC111801454 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-37
Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MHLWPSTRIRDSFKHGYIKKLEWNLHRMKIQK-HQQQQSSSKQNLLDKEQASDVNAETAE 60
           MHLWPSTRIRDSFK  YI+ LEWN HRMKIQK  QQQQSSSKQNLLDK+Q+SD + ET+ 
Sbjct: 1   MHLWPSTRIRDSFKSAYIQNLEWNFHRMKIQKQQQQQQSSSKQNLLDKQQSSDADGETSG 60

Query: 61  KSNSVSFGQRVLEFCSEVLMLLSCCYCCYCCGVCLSEEEEH 101
           KS+SVSFG RVLEFCSEVL+LLSCCYCCYCCG CLSEEEE+
Sbjct: 61  KSSSVSFGHRVLEFCSEVLLLLSCCYCCYCCGACLSEEEEN 101

[Close]

BLAST of Lcy13g006540 vs. NCBI nr
Match: KAG7012900.1 (hypothetical protein SDJN02_25653 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36
Identity = 79/96 (82.29%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MHLWPSTRIRDSFKHGYIKKLEWNLHRMKIQKHQQQQSSSKQNLLDKEQASDVNAETAEK 60
          MHLWPSTRIRDSFK  YI+KLEWN+HRMKIQKHQQQQSSSKQNLLDK+Q+SD + ET+ K
Sbjct: 1  MHLWPSTRIRDSFKSAYIQKLEWNIHRMKIQKHQQQQSSSKQNLLDKQQSSDADGETSGK 60

Query: 61 SNSVSFGQRVLEFCSEVLMLLSCCYCCYCCGVCLSE 97
          S+SVSFG RVLEFCSEVL+LLSCCYCCYCCGV + E
Sbjct: 61 SSSVSFGHRVLEFCSEVLLLLSCCYCCYCCGVSVLE 96

[Close]

BLAST of Lcy13g006540 vs. TAIR 10
Match: AT5G49015.1 (Expressed protein )

HSP 1 Score: 67.0 bits (162), Expect = 9.7e-12
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 1  MHLWPSTRIRDSFKHGYIKKLEWNLHRMKIQKHQQQQSSSKQNLLDKEQASDVNAETAEK 60
          MHLWPS ++R+SFK                QK  Q+ +S KQ+  ++++  D + E+   
Sbjct: 1  MHLWPSLKLRNSFK-------------STSQKRYQRMNSGKQSQSNQQKLLDGDKESG-- 60

Query: 61 SNSVSFGQRVLEFCSEVLMLLSCCYCCYCCGVCLSEEE 99
          S  +S G      C +V M+LSCCYCC+CCG C+ EEE
Sbjct: 61 SPEISSGGGFAVVCRDVAMVLSCCYCCFCCGACIDEEE 83

[Close]

BLAST of Lcy13g006540 vs. TAIR 10
Match: AT5G49015.2 (Expressed protein )

HSP 1 Score: 67.0 bits (162), Expect = 9.7e-12
Identity = 38/98 (38.78%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 1  MHLWPSTRIRDSFKHGYIKKLEWNLHRMKIQKHQQQQSSSKQNLLDKEQASDVNAETAEK 60
          MHLWPS ++R+SFK                QK  Q+ +S KQ+  ++++  D + E+   
Sbjct: 1  MHLWPSLKLRNSFK-------------STSQKRYQRMNSGKQSQSNQQKLLDGDKESG-- 60

Query: 61 SNSVSFGQRVLEFCSEVLMLLSCCYCCYCCGVCLSEEE 99
          S  +S G      C +V M+LSCCYCC+CCG C+ EEE
Sbjct: 61 SPEISSGGGFAVVCRDVAMVLSCCYCCFCCGACIDEEE 83

The following BLAST results are available for this feature:

BLAST of Lcy13g006540 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g006540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CC78	5.4e-42	86.00	uncharacterized protein LOC111010237 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1G1K0	5.9e-41	84.00	uncharacterized protein LOC111449839 OS=Cucurbita moschata OX=3662 GN=LOC1114498...	[more]
A0A6J1HPM3	7.7e-41	83.00	uncharacterized protein LOC111466560 OS=Cucurbita maxima OX=3661 GN=LOC111466560...	[more]
A0A0A0KRM0	7.8e-33	84.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623370 PE=4 SV=1	[more]
A0A5A7SU31	3.8e-32	82.61	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lcy13g006540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139281.1	1.1e-41	86.00	uncharacterized protein LOC111010237 [Momordica charantia]	[more]
XP_022945676.1	1.2e-40	84.00	uncharacterized protein LOC111449839 [Cucurbita moschata]	[more]
XP_022967037.1	1.6e-40	83.00	uncharacterized protein LOC111466560 [Cucurbita maxima]	[more]
XP_023541224.1	1.7e-37	81.19	uncharacterized protein LOC111801454 [Cucurbita pepo subsp. pepo]	[more]
KAG7012900.1	1.4e-36	82.29	hypothetical protein SDJN02_25653 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lcy13g006540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49015.1	9.7e-12	38.78	Expressed protein	[more]
AT5G49015.2	9.7e-12	38.78	Expressed protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..64
None	No IPR available	PANTHER	PTHR37263	EXPRESSED PROTEIN	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g006540.1	Lcy13g006540.1	mRNA