Lcy13g006330 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g006330
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	E3 ubiquitin ligase complex SCF subunit
Location	Chr13: 5606959 .. 5607920 (-)
RNA-Seq Expression	Lcy13g006330
Synteny	Lcy13g006330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCTTTATCAATGAATAAAAAATTTGAATCCCTTCCCACAAACTTCTAGATCATTGTGTCAATTGAATTAGGCTCACGTTGTTCAACAATATCCGGGGGATTCAAACCTCTCGCGTTTGGCTCTATGCTCAAATTTCTGTCAAACTTTCTTGAATGAGTTCAAGAAAATAATCTTGGACGTCAAGAAGAATCAGTTGAAATCTGTAACAGAATTAAGCAAAAGCCCTACAATGATTGGGGAAACGAATTCTGCCCTAAACCTTCAAATTCCGCCTCCGATCGCTCTTTCTCTCTCTATAAATTTCAATTCCGTTCTCCCTTCTTCAATTCATTCATCTTCATCTTCATCTTCATCTTCAATCCTGTTGATTTCGCGATGTCTTCATCAACCGGTCCCAAGATCCTTCAACTCAAATCTTCCGATGACGAAATTTACAGAGTCGAAGAGGCCGTCGCGAAGCAATCCGGACTGATTCGTAAATTTCTCGAAGTCGTCGGCGAAGAAAACGCTCCGATTCCGCTGCCGAAGGTGAGCGGAAGAATGTTGAGAATGGCGATGGAGTGGAGTACGAAGAACGCCGACGAGAAATTGGCGAAGGAAGAGCTGGAAGAATGGGAAAGTAAGTTCATGGAAGTGGATATGGATGTGATGTTTGAGCTGATATTGGCGGCCAATAATCTGGAATTGACCGATTTGTTGAATCGGCTCTGCAAGAAAGTGGCCGGAATCATGGCCGGAAAGACGCCGGAGGAACTTCGGAAGATTTTTAAGATTGAGAATGATTTTTCGCCGGAAGAAGAGGCGGAGCTCATGAAGCGATTTTGATTTTTCTTTGATTCAGATTGGGTTTTCAATTCTACCACCACCAGACAAACTTCCCCCAATTTCTCTGATTCAGATTGAATCAATTTTCCAAATTTTGATTGAATTTTAGGGTTAACGTTCAGATTTTTTTTTTTT

mRNA sequence

ACTCTTTATCAATGAATAAAAAATTTGAATCCCTTCCCACAAACTTCTAGATCATTGTGTCAATTGAATTAGGCTCACGTTGTTCAACAATATCCGGGGGATTCAAACCTCTCGCGTTTGGCTCTATGCTCAAATTTCTGTCAAACTTTCTTGAATGAGTTCAAGAAAATAATCTTGGACGTCAAGAAGAATCAGTTGAAATCTGTAACAGAATTAAGCAAAAGCCCTACAATGATTGGGGAAACGAATTCTGCCCTAAACCTTCAAATTCCGCCTCCGATCGCTCTTTCTCTCTCTATAAATTTCAATTCCGTTCTCCCTTCTTCAATTCATTCATCTTCATCTTCATCTTCATCTTCAATCCTGTTGATTTCGCGATGTCTTCATCAACCGGTCCCAAGATCCTTCAACTCAAATCTTCCGATGACGAAATTTACAGAGTCGAAGAGGCCGTCGCGAAGCAATCCGGACTGATTCGTAAATTTCTCGAAGTCGTCGGCGAAGAAAACGCTCCGATTCCGCTGCCGAAGGTGAGCGGAAGAATGTTGAGAATGGCGATGGAGTGGAGTACGAAGAACGCCGACGAGAAATTGGCGAAGGAAGAGCTGGAAGAATGGGAAAGTAAGTTCATGGAAGTGGATATGGATGTGATGTTTGAGCTGATATTGGCGGCCAATAATCTGGAATTGACCGATTTGTTGAATCGGCTCTGCAAGAAAGTGGCCGGAATCATGGCCGGAAAGACGCCGGAGGAACTTCGGAAGATTTTTAAGATTGAGAATGATTTTTCGCCGGAAGAAGAGGCGGAGCTCATGAAGCGATTTTGATTTTTCTTTGATTCAGATTGGGTTTTCAATTCTACCACCACCAGACAAACTTCCCCCAATTTCTCTGATTCAGATTGAATCAATTTTCCAAATTTTGATTGAATTTTAGGGTTAACGTTCAGATTTTTTTTTTTT

Coding sequence (CDS)

ATGTCTTCATCAACCGGTCCCAAGATCCTTCAACTCAAATCTTCCGATGACGAAATTTACAGAGTCGAAGAGGCCGTCGCGAAGCAATCCGGACTGATTCGTAAATTTCTCGAAGTCGTCGGCGAAGAAAACGCTCCGATTCCGCTGCCGAAGGTGAGCGGAAGAATGTTGAGAATGGCGATGGAGTGGAGTACGAAGAACGCCGACGAGAAATTGGCGAAGGAAGAGCTGGAAGAATGGGAAAGTAAGTTCATGGAAGTGGATATGGATGTGATGTTTGAGCTGATATTGGCGGCCAATAATCTGGAATTGACCGATTTGTTGAATCGGCTCTGCAAGAAAGTGGCCGGAATCATGGCCGGAAAGACGCCGGAGGAACTTCGGAAGATTTTTAAGATTGAGAATGATTTTTCGCCGGAAGAAGAGGCGGAGCTCATGAAGCGATTTTGA

Protein sequence

MSSSTGPKILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPKVSGRMLRMAMEWSTKNADEKLAKEELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVAGIMAGKTPEELRKIFKIENDFSPEEEAELMKRF

Homology

[Close]

BLAST of Lcy13g006330 vs. ExPASy Swiss-Prot
Match: Q9Y709 (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=skp1 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-27
Identity = 65/150 (43.33%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 10  LQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPKVSGRMLRMAMEW------ 69
           ++L SSD+E + V++ +A++S LI+  LE VGE N PIPLP VS  +LR  +EW      
Sbjct: 4   IKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHKN 63

Query: 70  -----STKNADEKLAKE-ELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVAG 129
                + + +D +L K  +++EW+ KFM VD +++FE++LA+N L++  LL+  CK VA 
Sbjct: 64  DLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVAN 123

Query: 130 IMAGKTPEELRKIFKIENDFSPEEEAELMK 148
           ++ GK+PE++RK F I NDF+PEEE ++ K
Sbjct: 124 MIRGKSPEDIRKTFNIPNDFTPEEEEQIRK 153

[Close]

BLAST of Lcy13g006330 vs. ExPASy Swiss-Prot
Match: B6QGB9 (E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) OX=441960 GN=sconC PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.0e-27
Identity = 63/146 (43.15%), Postives = 97/146 (66.44%), Query Frame = 0


Query: 12  LKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPKVSGRMLRMAMEWST------ 71
           L+SSD     VE AVA++S LI+  LE +GE   P+P+P V+  +L+  +EW T      
Sbjct: 7   LQSSDSVDITVERAVAERSMLIKNLLEDLGESEEPVPIPNVNESVLKKVIEWCTHHKNDP 66

Query: 72  ----KNADEKLAKEELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 131
               ++ D +    E++EW+ KFM+VD +++FE+ILAAN L++  LL+  CK VA ++ G
Sbjct: 67  QSTGEDDDNRRRTTEIDEWDQKFMQVDQEMLFEIILAANYLDIKALLDVGCKTVANMIKG 126

Query: 132 KTPEELRKIFKIENDFSPEEEAELMK 148
           K+PEE+RK F I+NDF+PEEE ++ +
Sbjct: 127 KSPEEIRKTFNIQNDFTPEEEDQIRR 152

[Close]

BLAST of Lcy13g006330 vs. ExPASy Swiss-Prot
Match: B8MDP8 (E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) OX=441959 GN=sconC PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.0e-27
Identity = 65/146 (44.52%), Postives = 98/146 (67.12%), Query Frame = 0


Query: 12  LKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPKVSGRMLRMAMEWST--KNAD 71
           L+SSD     VE AVA++S LI+  LE +GE   P+P+P V+  +L+  +EW T  KN  
Sbjct: 7   LQSSDQVNITVERAVAERSMLIKNLLEDLGESEEPVPIPNVNESVLKKVIEWCTHHKNDP 66

Query: 72  EKLAKE--------ELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 131
           +   +E        E++EW+ KFM+VD +++FE+ILAAN L++  LL+  CK VA ++ G
Sbjct: 67  QTTGEEDDNRRRTTEIDEWDQKFMQVDQEMLFEIILAANYLDIKALLDVGCKTVANMIKG 126

Query: 132 KTPEELRKIFKIENDFSPEEEAELMK 148
           K+PEE+RK F I+NDF+PEEE ++ +
Sbjct: 127 KSPEEIRKTFNIQNDFTPEEEDQIRR 152

[Close]

BLAST of Lcy13g006330 vs. ExPASy Swiss-Prot
Match: Q5BAX8 (E3 ubiquitin ligase complex SCF subunit sconC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=sconC PE=3 SV=2)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25
Identity = 62/150 (41.33%), Postives = 96/150 (64.00%), Query Frame = 0


Query: 8   KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPKVSGRMLRMAMEW---- 67
           K+L + S+D +   V   VA++S LI+  LE +G+   PIP+P VS  +L   +EW    
Sbjct: 4   KMLVMTSNDGKNIEVPRDVAERSLLIKNMLEDLGDPTEPIPIPNVSENVLSKVLEWCAHH 63

Query: 68  ------STKNADEKLAKEELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVAG 127
                 S  + D +    ++EEW+ KFM+VD +++FE+ILAAN L++  LL+  CK VA 
Sbjct: 64  RNDPPSSADDDDSRRKTTDIEEWDQKFMQVDQEMLFEIILAANYLDIKPLLDIGCKTVAN 123

Query: 128 IMAGKTPEELRKIFKIENDFSPEEEAELMK 148
           ++ GK+PEE+RK F I+NDF+PEEE ++ +
Sbjct: 124 MIKGKSPEEIRKTFNIQNDFTPEEEDQIRR 153

[Close]

BLAST of Lcy13g006330 vs. ExPASy Swiss-Prot
Match: B8NSJ0 (E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=sconC PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-25
Identity = 62/148 (41.89%), Postives = 94/148 (63.51%), Query Frame = 0


Query: 10  LQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPKVSGRMLRMAMEWSTKNA- 69
           L   SSD     VE  VA++S LI+  LE +GE   PIP+P V+  +L+  +EW T +  
Sbjct: 6   LTFTSSDGVDIPVERDVAERSQLIKNMLEDLGETGEPIPIPNVNEAVLKKVIEWCTHHKN 65

Query: 70  ---------DEKLAKEELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVAGIM 129
                    D +    +++EW+ KFM+VD +++FE+ILAAN L++  LL+  CK VA ++
Sbjct: 66  DPPSTGDDDDSRRKTTDIDEWDQKFMQVDQEMLFEIILAANYLDIKGLLDVGCKTVANMI 125

Query: 130 AGKTPEELRKIFKIENDFSPEEEAELMK 148
            GK+PEE+RK F I+NDF+PEEE ++ +
Sbjct: 126 KGKSPEEIRKTFNIQNDFTPEEEDQIRR 153

[Close]

BLAST of Lcy13g006330 vs. ExPASy TrEMBL
Match: A0A6J1CDL6 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111010258 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.9e-36
Identity = 82/138 (59.42%), Postives = 111/138 (80.43%), Query Frame = 0


Query: 12  LKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPKVSGRMLRMAMEWSTKNADEK 71
           LK+ D++IY VEEA+AKQSG+IR FLE    +   IPL KV+ RML++ MEW   +A E+
Sbjct: 6   LKTCDNQIYEVEEAIAKQSGVIRNFLEDFDGDCVEIPLLKVNERMLKVVMEWCAMHAGEE 65

Query: 72  LAKEELEEWESKFMEV-DMDVMFELILAANNLELTDLLNRLCKKVAGIMAGKTPEELRKI 131
           L ++EL++WESKF+ + D+D ++E+++AAN LE+ DL++RLCKKVA I+AGK PEE+RKI
Sbjct: 66  LEEKELQDWESKFVAMDDLDFLYEVLMAANYLEVVDLVHRLCKKVADIIAGKQPEEIRKI 125

Query: 132 FKIENDFSPEEEAELMKR 149
           F IENDF+PEEEAEL KR
Sbjct: 126 FNIENDFTPEEEAELRKR 143

[Close]

BLAST of Lcy13g006330 vs. ExPASy TrEMBL
Match: A0A0A0KRJ8 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.8e-31
Identity = 75/144 (52.08%), Postives = 109/144 (75.69%), Query Frame = 0


Query: 8   KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEEN--APIPLPKVSGRMLRMAMEWST 67
           +I+ L+SS++EI++V E VAKQS ++R FLE     N    IPLP +SGR+L M +EW  
Sbjct: 2   RIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIV 61

Query: 68  KNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAGKTP 127
            + +EKLA+E L  W++KF+E +D+D++FELI+AAN LE+TDL +  C+ VA  ++GK+P
Sbjct: 62  MHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSP 121

Query: 128 EELRKIFKIENDFSPEEEAELMKR 149
           EE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 EEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Lcy13g006330 vs. ExPASy TrEMBL
Match: A0A5A7SU15 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007240 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.7e-31
Identity = 75/147 (51.02%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 8   KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENA-----PIPLPKVSGRMLRMAME 67
           + + L+SS++EI++V E VAKQS ++R FLE   E+N+      IPLP +SG++L M +E
Sbjct: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLE---EDNSNGDEITIPLPNISGKLLGMVIE 61

Query: 68  WSTKNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 127
           W   + +EKLA+E+L  W++KFME +D+D++FELI+AAN LE+TDL +  C+ VA  ++G
Sbjct: 62  WIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 121

Query: 128 KTPEELRKIFKIENDFSPEEEAELMKR 149
           K+PEE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 KSPEEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Lcy13g006330 vs. ExPASy TrEMBL
Match: A0A5D3CCN6 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002490 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.7e-31
Identity = 75/147 (51.02%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 8   KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENA-----PIPLPKVSGRMLRMAME 67
           + + L+SS++EI++V E VAKQS ++R FLE   E+N+      IPLP +SG++L M +E
Sbjct: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLE---EDNSNGDEITIPLPNISGKLLGMVIE 61

Query: 68  WSTKNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 127
           W   + +EKLA+E+L  W++KFME +D+D++FELI+AAN LE+TDL +  C+ VA  ++G
Sbjct: 62  WIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 121

Query: 128 KTPEELRKIFKIENDFSPEEEAELMKR 149
           K+PEE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 KSPEEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Lcy13g006330 vs. ExPASy TrEMBL
Match: A0A1S3BGP6 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.7e-31
Identity = 75/147 (51.02%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 8   KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENA-----PIPLPKVSGRMLRMAME 67
           + + L+SS++EI++V E VAKQS ++R FLE   E+N+      IPLP +SG++L M +E
Sbjct: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLE---EDNSNGDEITIPLPNISGKLLGMVIE 61

Query: 68  WSTKNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 127
           W   + +EKLA+E+L  W++KFME +D+D++FELI+AAN LE+TDL +  C+ VA  ++G
Sbjct: 62  WIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 121

Query: 128 KTPEELRKIFKIENDFSPEEEAELMKR 149
           K+PEE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 KSPEEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Lcy13g006330 vs. NCBI nr
Match: XP_022139312.1 (SKP1-like protein 14 [Momordica charantia])

HSP 1 Score: 161.4 bits (407), Expect = 6.1e-36
Identity = 82/138 (59.42%), Postives = 111/138 (80.43%), Query Frame = 0


Query: 12  LKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPKVSGRMLRMAMEWSTKNADEK 71
           LK+ D++IY VEEA+AKQSG+IR FLE    +   IPL KV+ RML++ MEW   +A E+
Sbjct: 6   LKTCDNQIYEVEEAIAKQSGVIRNFLEDFDGDCVEIPLLKVNERMLKVVMEWCAMHAGEE 65

Query: 72  LAKEELEEWESKFMEV-DMDVMFELILAANNLELTDLLNRLCKKVAGIMAGKTPEELRKI 131
           L ++EL++WESKF+ + D+D ++E+++AAN LE+ DL++RLCKKVA I+AGK PEE+RKI
Sbjct: 66  LEEKELQDWESKFVAMDDLDFLYEVLMAANYLEVVDLVHRLCKKVADIIAGKQPEEIRKI 125

Query: 132 FKIENDFSPEEEAELMKR 149
           F IENDF+PEEEAEL KR
Sbjct: 126 FNIENDFTPEEEAELRKR 143

[Close]

BLAST of Lcy13g006330 vs. NCBI nr
Match: XP_004142439.1 (SKP1-like protein 14 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 5.9e-31
Identity = 75/144 (52.08%), Postives = 109/144 (75.69%), Query Frame = 0


Query: 8   KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEEN--APIPLPKVSGRMLRMAMEWST 67
           +I+ L+SS++EI++V E VAKQS ++R FLE     N    IPLP +SGR+L M +EW  
Sbjct: 2   RIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIV 61

Query: 68  KNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAGKTP 127
            + +EKLA+E L  W++KF+E +D+D++FELI+AAN LE+TDL +  C+ VA  ++GK+P
Sbjct: 62  MHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSP 121

Query: 128 EELRKIFKIENDFSPEEEAELMKR 149
           EE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 EEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Lcy13g006330 vs. NCBI nr
Match: TYK09255.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 7.7e-31
Identity = 75/147 (51.02%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 8   KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENA-----PIPLPKVSGRMLRMAME 67
           + + L+SS++EI++V E VAKQS ++R FLE   E+N+      IPLP +SG++L M +E
Sbjct: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLE---EDNSNGDEITIPLPNISGKLLGMVIE 61

Query: 68  WSTKNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 127
           W   + +EKLA+E+L  W++KFME +D+D++FELI+AAN LE+TDL +  C+ VA  ++G
Sbjct: 62  WIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 121

Query: 128 KTPEELRKIFKIENDFSPEEEAELMKR 149
           K+PEE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 KSPEEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Lcy13g006330 vs. NCBI nr
Match: XP_008446842.1 (PREDICTED: SKP1-like protein 12 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 7.7e-31
Identity = 75/147 (51.02%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 8   KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENA-----PIPLPKVSGRMLRMAME 67
           + + L+SS++EI++V E VAKQS ++R FLE   E+N+      IPLP +SG++L M +E
Sbjct: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLE---EDNSNGDEITIPLPNISGKLLGMVIE 61

Query: 68  WSTKNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 127
           W   + +EKLA+E+L  W++KFME +D+D++FELI+AAN LE+TDL +  C+ VA  ++G
Sbjct: 62  WIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 121

Query: 128 KTPEELRKIFKIENDFSPEEEAELMKR 149
           K+PEE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 KSPEEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Lcy13g006330 vs. NCBI nr
Match: KAA0034704.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 7.7e-31
Identity = 75/147 (51.02%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 8   KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENA-----PIPLPKVSGRMLRMAME 67
           + + L+SS++EI++V E VAKQS ++R FLE   E+N+      IPLP +SG++L M +E
Sbjct: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLE---EDNSNGDEITIPLPNISGKLLGMVIE 61

Query: 68  WSTKNADEKLAKEELEEWESKFME-VDMDVMFELILAANNLELTDLLNRLCKKVAGIMAG 127
           W   + +EKLA+E+L  W++KFME +D+D++FELI+AAN LE+TDL +  C+ VA  ++G
Sbjct: 62  WIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 121

Query: 128 KTPEELRKIFKIENDFSPEEEAELMKR 149
           K+PEE+RKIF I NDF+PEEEAE+ ++
Sbjct: 122 KSPEEIRKIFNITNDFTPEEEAEIRRQ 145

[Close]

BLAST of Lcy13g006330 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 107.8 bits (268), Expect = 7.4e-24
Identity = 63/150 (42.00%), Postives = 93/150 (62.00%), Query Frame = 0


Query: 8   KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPKVSGRMLRMAMEWSTKN 67
           K++ LKSSD E + +EEAVA +S  I+  +E    +N  IPLP V+G +L   +E+  K+
Sbjct: 6   KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNG-IPLPNVTGAILAKVIEYCKKH 65

Query: 68  ADE------------KLAKEELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKV 127
            +                 +EL+ W+S+F++VD   +F+LILAAN L +  LL+  CK V
Sbjct: 66  VEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAV 125

Query: 128 AGIMAGKTPEELRKIFKIENDFSPEEEAEL 146
           A  M GKTPE++R  F I+ND++PEEEAE+
Sbjct: 126 ADQMRGKTPEQMRAHFNIKNDYTPEEEAEV 154

[Close]

BLAST of Lcy13g006330 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 105.1 bits (261), Expect = 4.8e-23
Identity = 60/151 (39.74%), Postives = 94/151 (62.25%), Query Frame = 0


Query: 8   KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPKVSGRMLRMAMEWSTKN 67
           K + LKSSD E + VEEAVA +S  I   +E    +N  +PLP V+ ++L   +E+  ++
Sbjct: 4   KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG-VPLPNVTSKILAKVIEYCKRH 63

Query: 68  ADEKLAK-----------EELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVA 127
            +   +K           ++L+ W++ FM++D   +FELILAAN L + +LL+  C+ VA
Sbjct: 64  VEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVA 123

Query: 128 GIMAGKTPEELRKIFKIENDFSPEEEAELMK 148
            ++ GKTPEE+R  F I+NDF+PEEE E+ +
Sbjct: 124 DMIKGKTPEEIRTTFNIKNDFTPEEEEEVRR 153

[Close]

BLAST of Lcy13g006330 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-22
Identity = 62/143 (43.36%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 8   KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPKVSGRMLRMAMEWSTK- 67
           K++ L SSD + + VEEAVA QS  I   +E     +  IPL  V  ++L   +E+  K 
Sbjct: 4   KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADG-IPLANVESKILVKVIEYCKKH 63

Query: 68  NADE--KLAKEELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVAGIMAGKTP 127
           + DE   +++E+L  W+ KFM+++   +FELILAAN L +  LL+  C+ VA ++ GKTP
Sbjct: 64  HVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTP 123

Query: 128 EELRKIFKIENDFSPEEEAELMK 148
           EE+R  F IENDF+PEEE  + K
Sbjct: 124 EEIRSTFNIENDFTPEEEEAVRK 145

[Close]

BLAST of Lcy13g006330 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 102.1 bits (253), Expect = 4.1e-22
Identity = 63/159 (39.62%), Postives = 94/159 (59.12%), Query Frame = 0


Query: 10  LQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPKVSGRMLRMAMEW------ 69
           + LKSSD E + ++EAVA +S  I+  +E    +N  IPLP V+ ++L   +E+      
Sbjct: 7   ITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNG-IPLPNVTSKILSKVIEYCKRHVE 66

Query: 70  ----STKNADEKLA-----------KEELEEWESKFMEVDMDVMFELILAANNLELTDLL 129
               S   AD   A            E+L+ W+S+F++VD   +F+LILAAN L +  LL
Sbjct: 67  AAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLL 126

Query: 130 NRLCKKVAGIMAGKTPEELRKIFKIENDFSPEEEAELMK 148
           +  C+ VA ++ GKTPEE+RK F I+NDF+PEEE E+ +
Sbjct: 127 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRR 164

[Close]

BLAST of Lcy13g006330 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 101.3 bits (251), Expect = 6.9e-22
Identity = 61/143 (42.66%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 8   KILQLKSSDDEIYRVEEAVAKQSGLIRKFLEVVGEENAPIPLPKVSGRMLRMAMEWSTK- 67
           K++ L SSD + + VEEAVA QS  I   +E     +  IPL  V  ++L   +E+  K 
Sbjct: 4   KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADG-IPLANVESKILVKVIEYCKKY 63

Query: 68  NADE--KLAKEELEEWESKFMEVDMDVMFELILAANNLELTDLLNRLCKKVAGIMAGKTP 127
           + DE   +++E+L +W+ KFM+++   +FELILAAN L +  L +  C+ VA ++ GKTP
Sbjct: 64  HVDEANPISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTP 123

Query: 128 EELRKIFKIENDFSPEEEAELMK 148
           EE+R  F IENDF+PEEE  + K
Sbjct: 124 EEIRSTFNIENDFTPEEEEAVRK 145

The following BLAST results are available for this feature:

BLAST of Lcy13g006330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y709	1.1e-27	43.33	Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
B6QGB9	7.0e-27	43.15	E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces marneffei (strain A...	[more]
B8MDP8	7.0e-27	44.52	E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces stipitatus (strain ...	[more]
Q5BAX8	1.3e-25	41.33	E3 ubiquitin ligase complex SCF subunit sconC OS=Emericella nidulans (strain FGS...	[more]
B8NSJ0	2.2e-25	41.89	E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus flavus (strain ATCC...	[more]

BLAST of Lcy13g006330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDL6	2.9e-36	59.42	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111010258 PE=3 SV=1	[more]
A0A0A0KRJ8	2.8e-31	52.08	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1	[more]
A0A5A7SU15	3.7e-31	51.02	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G...	[more]
A0A5D3CCN6	3.7e-31	51.02	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475...	[more]
A0A1S3BGP6	3.7e-31	51.02	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1	[more]

BLAST of Lcy13g006330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139312.1	6.1e-36	59.42	SKP1-like protein 14 [Momordica charantia]	[more]
XP_004142439.1	5.9e-31	52.08	SKP1-like protein 14 [Cucumis sativus]	[more]
TYK09255.1	7.7e-31	51.02	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]
XP_008446842.1	7.7e-31	51.02	PREDICTED: SKP1-like protein 12 [Cucumis melo]	[more]
KAA0034704.1	7.7e-31	51.02	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy13g006330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20140.1	7.4e-24	42.00	SKP1-like 4	[more]
AT1G75950.1	4.8e-23	39.74	S phase kinase-associated protein 1	[more]
AT4G34210.1	3.1e-22	43.36	SKP1-like 11	[more]
AT5G42190.1	4.1e-22	39.62	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT4G34470.1	6.9e-22	42.66	SKP1-like 12	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 7..104 e-value: 2.9E-30 score: 116.6
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..146 e-value: 1.3E-16 score: 60.4
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..148 e-value: 6.8E-42 score: 140.9
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 8..145
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 5..149 e-value: 8.6E-45 score: 154.7
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 9..70
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 9..67 e-value: 1.0E-14 score: 54.5
None	No IPR available	PANTHER	PTHR11165:SF110	SCF UBIQUITIN LIGASE, SKP1 COMPONENT	coord: 8..145
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 77..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g006330.1	Lcy13g006330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0097602	cullin family protein binding