Lcy13g006320 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g006320
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	SKP1-like protein
Location	Chr13: 5601468 .. 5602029 (-)
RNA-Seq Expression	Lcy13g006320
Synteny	Lcy13g006320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATTCCTCTCTGCTTCTTCAATTCCATCCTCCGATTATCGGTAATTCCGCCATGAGTACGATTCAACTGAAGTCATTCGACAACGAAATCTACGAGATCGATGAGGCGATCGCTGCGAAGCAATCCGTCGTGATTGCAAACATGCTGGAACTGGAAGAGTCGGAGAAGTCCAATGGCGAAAAGATTCTGATTCCGCTGCCGAATATCAGTGGGAAAATGTTGAAGATGGTTCTCGACTGGATTGTGAAGCACGACGATAAGAAATTGACCGAGAAAGAACTTCGAGATTGGGAGAACGAGTTCGTGGAAGTGGATTTGGATGTGATGTATGAGCTTATAATGGCGGCCAATTACATGGAAGTGAACGAATTGCTCCATCGCGCTTGCCAGAGAGTCGCCGATCACATCGCTGGAAAGCAGCCGGAGGAGATTCGGAGGATATTTAACATTGAGAATGATTTTTCCCCTGAAGAAGAGGCGGAGATCCGACGCCAGAATGCTTGGGTTTTCGATTCCGCCGGTAGCAGCAGCAGATAGATTTCTGATTTTACAGATTCTTT

mRNA sequence

AAAATTCCTCTCTGCTTCTTCAATTCCATCCTCCGATTATCGGTAATTCCGCCATGAGTACGATTCAACTGAAGTCATTCGACAACGAAATCTACGAGATCGATGAGGCGATCGCTGCGAAGCAATCCGTCGTGATTGCAAACATGCTGGAACTGGAAGAGTCGGAGAAGTCCAATGGCGAAAAGATTCTGATTCCGCTGCCGAATATCAGTGGGAAAATGTTGAAGATGGTTCTCGACTGGATTGTGAAGCACGACGATAAGAAATTGACCGAGAAAGAACTTCGAGATTGGGAGAACGAGTTCGTGGAAGTGGATTTGGATGTGATGTATGAGCTTATAATGGCGGCCAATTACATGGAAGTGAACGAATTGCTCCATCGCGCTTGCCAGAGAGTCGCCGATCACATCGCTGGAAAGCAGCCGGAGGAGATTCGGAGGATATTTAACATTGAGAATGATTTTTCCCCTGAAGAAGAGGCGGAGATCCGACGCCAGAATGCTTGGGTTTTCGATTCCGCCGGTAGCAGCAGCAGATAGATTTCTGATTTTACAGATTCTTT

Coding sequence (CDS)

ATGAGTACGATTCAACTGAAGTCATTCGACAACGAAATCTACGAGATCGATGAGGCGATCGCTGCGAAGCAATCCGTCGTGATTGCAAACATGCTGGAACTGGAAGAGTCGGAGAAGTCCAATGGCGAAAAGATTCTGATTCCGCTGCCGAATATCAGTGGGAAAATGTTGAAGATGGTTCTCGACTGGATTGTGAAGCACGACGATAAGAAATTGACCGAGAAAGAACTTCGAGATTGGGAGAACGAGTTCGTGGAAGTGGATTTGGATGTGATGTATGAGCTTATAATGGCGGCCAATTACATGGAAGTGAACGAATTGCTCCATCGCGCTTGCCAGAGAGTCGCCGATCACATCGCTGGAAAGCAGCCGGAGGAGATTCGGAGGATATTTAACATTGAGAATGATTTTTCCCCTGAAGAAGAGGCGGAGATCCGACGCCAGAATGCTTGGGTTTTCGATTCCGCCGGTAGCAGCAGCAGATAG

Protein sequence

MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMVLDWIVKHDDKKLTEKELRDWENEFVEVDLDVMYELIMAANYMEVNELLHRACQRVADHIAGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFDSAGSSSR

Homology

[Close]

BLAST of Lcy13g006320 vs. ExPASy Swiss-Prot
Match: Q9WTX5 (S-phase kinase-associated protein 1 OS=Mus musculus OX=10090 GN=Skp1 PE=1 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-28
Identity = 72/161 (44.72%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M TI+L+S D EI+E+D  I AKQSV I  MLE +      G+   +PLPN++  +LK V
Sbjct: 1   MPTIKLQSSDGEIFEVDVEI-AKQSVTIKTMLE-DLGMDDEGDDDPVPLPNVNAAILKKV 60

Query: 61  LDWIVKH-------DDKKLTEKELRD---WENEFVEVDLDVMYELIMAANYMEVNELLHR 120
           + W   H       +D +  EK   D   W+ EF++VD   ++ELI+AANY+++  LL  
Sbjct: 61  IQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDV 120

Query: 121 ACQRVADHIAGKQPEEIRRIFNIENDFSPEEEAEIRRQNAW 152
            C+ VA+ I GK PEEIR+ FNI+NDF+ EEEA++R++N W
Sbjct: 121 TCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Lcy13g006320 vs. ExPASy Swiss-Prot
Match: Q6PEC4 (S-phase kinase-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Skp1 PE=1 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-28
Identity = 72/161 (44.72%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M TI+L+S D EI+E+D  I AKQSV I  MLE +      G+   +PLPN++  +LK V
Sbjct: 1   MPTIKLQSSDGEIFEVDVEI-AKQSVTIKTMLE-DLGMDDEGDDDPVPLPNVNAAILKKV 60

Query: 61  LDWIVKH-------DDKKLTEKELRD---WENEFVEVDLDVMYELIMAANYMEVNELLHR 120
           + W   H       +D +  EK   D   W+ EF++VD   ++ELI+AANY+++  LL  
Sbjct: 61  IQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDV 120

Query: 121 ACQRVADHIAGKQPEEIRRIFNIENDFSPEEEAEIRRQNAW 152
            C+ VA+ I GK PEEIR+ FNI+NDF+ EEEA++R++N W
Sbjct: 121 TCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Lcy13g006320 vs. ExPASy Swiss-Prot
Match: Q3ZCF3 (S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-28
Identity = 71/161 (44.10%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M +I+L+S D EI+E+D  I AKQSV I  MLE +      G+   +PLPN++  +LK V
Sbjct: 1   MPSIKLQSSDGEIFEVDVEI-AKQSVTIKTMLE-DLGMDDEGDDDPVPLPNVNAAILKKV 60

Query: 61  LDWIVKH-------DDKKLTEKELRD---WENEFVEVDLDVMYELIMAANYMEVNELLHR 120
           + W   H       +D +  EK   D   W+ EF++VD   ++ELI+AANY+++  LL  
Sbjct: 61  IQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDV 120

Query: 121 ACQRVADHIAGKQPEEIRRIFNIENDFSPEEEAEIRRQNAW 152
            C+ VA+ I GK PEEIR+ FNI+NDF+ EEEA++R++N W
Sbjct: 121 TCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Lcy13g006320 vs. ExPASy Swiss-Prot
Match: P63209 (S-phase kinase-associated protein 1 OS=Cavia porcellus OX=10141 GN=SKP1 PE=2 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-28
Identity = 71/161 (44.10%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M +I+L+S D EI+E+D  I AKQSV I  MLE +      G+   +PLPN++  +LK V
Sbjct: 1   MPSIKLQSSDGEIFEVDVEI-AKQSVTIKTMLE-DLGMDDEGDDDPVPLPNVNAAILKKV 60

Query: 61  LDWIVKH-------DDKKLTEKELRD---WENEFVEVDLDVMYELIMAANYMEVNELLHR 120
           + W   H       +D +  EK   D   W+ EF++VD   ++ELI+AANY+++  LL  
Sbjct: 61  IQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDV 120

Query: 121 ACQRVADHIAGKQPEEIRRIFNIENDFSPEEEAEIRRQNAW 152
            C+ VA+ I GK PEEIR+ FNI+NDF+ EEEA++R++N W
Sbjct: 121 TCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Lcy13g006320 vs. ExPASy Swiss-Prot
Match: Q5ZKF5 (S-phase kinase-associated protein 1 OS=Gallus gallus OX=9031 GN=SKP1 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-28
Identity = 71/161 (44.10%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M +I+L+S D EI+E+D  I AKQSV I  MLE +      G+   +PLPN++  +LK V
Sbjct: 1   MPSIKLQSSDGEIFEVDVEI-AKQSVTIKTMLE-DLGMDDEGDDDPVPLPNVNAAILKKV 60

Query: 61  LDWIVKH-------DDKKLTEKELRD---WENEFVEVDLDVMYELIMAANYMEVNELLHR 120
           + W   H       +D +  EK   D   W+ EF++VD   ++ELI+AANY+++  LL  
Sbjct: 61  IQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDV 120

Query: 121 ACQRVADHIAGKQPEEIRRIFNIENDFSPEEEAEIRRQNAW 152
            C+ VA+ I GK PEEIR+ FNI+NDF+ EEEA++R++N W
Sbjct: 121 TCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Lcy13g006320 vs. ExPASy TrEMBL
Match: A0A5A7SU15 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007240 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 6.4e-45
Identity = 96/161 (59.63%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M T+ L+S +NEI+++ E + AKQSVV+ N L   E + SNG++I IPLPNISGK+L MV
Sbjct: 1   MRTVNLRSSENEIFKVSEEV-AKQSVVVRNFL---EEDNSNGDEITIPLPNISGKLLGMV 60

Query: 61  LDWIVKHDDKKLTEKELRDWENEFVE-VDLDVMYELIMAANYMEVNELLHRACQRVADHI 120
           ++WI  H ++KL E++L  W+ +F+E +DLD+++ELIMAANY+EV +L H  CQ VAD I
Sbjct: 61  IEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKI 120

Query: 121 AGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFDSAGSSS 161
           +GK PEEIR+IFNI NDF+PEEEAEIRRQNAWVF+ +GS S
Sbjct: 121 SGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157

[Close]

BLAST of Lcy13g006320 vs. ExPASy TrEMBL
Match: A0A5D3CCN6 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002490 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 6.4e-45
Identity = 96/161 (59.63%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M T+ L+S +NEI+++ E + AKQSVV+ N L   E + SNG++I IPLPNISGK+L MV
Sbjct: 1   MRTVNLRSSENEIFKVSEEV-AKQSVVVRNFL---EEDNSNGDEITIPLPNISGKLLGMV 60

Query: 61  LDWIVKHDDKKLTEKELRDWENEFVE-VDLDVMYELIMAANYMEVNELLHRACQRVADHI 120
           ++WI  H ++KL E++L  W+ +F+E +DLD+++ELIMAANY+EV +L H  CQ VAD I
Sbjct: 61  IEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKI 120

Query: 121 AGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFDSAGSSS 161
           +GK PEEIR+IFNI NDF+PEEEAEIRRQNAWVF+ +GS S
Sbjct: 121 SGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157

[Close]

BLAST of Lcy13g006320 vs. ExPASy TrEMBL
Match: A0A1S3BGP6 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 6.4e-45
Identity = 96/161 (59.63%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M T+ L+S +NEI+++ E + AKQSVV+ N L   E + SNG++I IPLPNISGK+L MV
Sbjct: 1   MRTVNLRSSENEIFKVSEEV-AKQSVVVRNFL---EEDNSNGDEITIPLPNISGKLLGMV 60

Query: 61  LDWIVKHDDKKLTEKELRDWENEFVE-VDLDVMYELIMAANYMEVNELLHRACQRVADHI 120
           ++WI  H ++KL E++L  W+ +F+E +DLD+++ELIMAANY+EV +L H  CQ VAD I
Sbjct: 61  IEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKI 120

Query: 121 AGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFDSAGSSS 161
           +GK PEEIR+IFNI NDF+PEEEAEIRRQNAWVF+ +GS S
Sbjct: 121 SGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157

[Close]

BLAST of Lcy13g006320 vs. ExPASy TrEMBL
Match: A0A0A0KRJ8 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.9e-42
Identity = 93/161 (57.76%), Postives = 125/161 (77.64%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M  + L+S +NEI+++ E + AKQSVV+   L   E + SN ++I IPLPNISG++L MV
Sbjct: 1   MRIVNLRSSENEIFKVSEEV-AKQSVVVRIFL---EEDDSNNDEITIPLPNISGRLLGMV 60

Query: 61  LDWIVKHDDKKLTEKELRDWENEFVE-VDLDVMYELIMAANYMEVNELLHRACQRVADHI 120
           ++WIV H ++KL E+ L  W+ +F+E +DLD+++ELIMAANY+EV +L H  CQ VAD I
Sbjct: 61  IEWIVMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKI 120

Query: 121 AGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFDSAGSSS 161
           +GK PEEIR+IFNI NDF+PEEEAEIRRQNAWVF+ +GS S
Sbjct: 121 SGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157

[Close]

BLAST of Lcy13g006320 vs. ExPASy TrEMBL
Match: A0A6J1JGP3 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111486777 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.6e-40
Identity = 88/155 (56.77%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M T QLKS DN+I+++ E IA  QS VI N L   E   S+ ++I+IPLPN+ G++L+M+
Sbjct: 1   MRTFQLKSSDNKIFKVSEEIAI-QSAVIKNFL---EDFGSDSDEIVIPLPNVRGRILEMM 60

Query: 61  LDWIVKHDDKKLTEKELRDWENEFV-EVDLDVMYELIMAANYMEVNELLHRACQRVADHI 120
           ++W+VKH D++LT++E+ DWEN+F+ +++++V  EL+MAANY+EV  LLHR CQ +ADHI
Sbjct: 61  IEWMVKHVDEELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADHI 120

Query: 121 AGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFD 155
           +GK PEEIRRI NI +DF+PEEEAEIRRQN WV +
Sbjct: 121 SGKSPEEIRRILNITSDFTPEEEAEIRRQNGWVLN 151

[Close]

BLAST of Lcy13g006320 vs. NCBI nr
Match: XP_038892847.1 (SKP1-like protein 14 [Benincasa hispida])

HSP 1 Score: 191.8 bits (486), Expect = 4.5e-45
Identity = 98/161 (60.87%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M T+ L+S +NE++++ E I AKQSVV+ N LE +E   SN +++ IPLPNISG++L MV
Sbjct: 1   MRTVNLRSSENEVFKVREEI-AKQSVVVRNFLEEDE---SNSDEVTIPLPNISGRILAMV 60

Query: 61  LDWIVKHDDKKLTEKELRDWENEFV-EVDLDVMYELIMAANYMEVNELLHRACQRVADHI 120
           ++WIVKH ++KLTE  L+DW+ +FV ++DLD ++ELIMAANY+EV +L H+ CQ VAD I
Sbjct: 61  IEWIVKHVEEKLTETALKDWQIKFVGDLDLDSLFELIMAANYLEVTDLFHQTCQSVADKI 120

Query: 121 AGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFDSAGSSS 161
           AGK PEEIR+IFNI NDF+PEEEAEIRRQNAWVF+S   S+
Sbjct: 121 AGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFESGTGST 157

[Close]

BLAST of Lcy13g006320 vs. NCBI nr
Match: TYK09255.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-44
Identity = 96/161 (59.63%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M T+ L+S +NEI+++ E + AKQSVV+ N L   E + SNG++I IPLPNISGK+L MV
Sbjct: 1   MRTVNLRSSENEIFKVSEEV-AKQSVVVRNFL---EEDNSNGDEITIPLPNISGKLLGMV 60

Query: 61  LDWIVKHDDKKLTEKELRDWENEFVE-VDLDVMYELIMAANYMEVNELLHRACQRVADHI 120
           ++WI  H ++KL E++L  W+ +F+E +DLD+++ELIMAANY+EV +L H  CQ VAD I
Sbjct: 61  IEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKI 120

Query: 121 AGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFDSAGSSS 161
           +GK PEEIR+IFNI NDF+PEEEAEIRRQNAWVF+ +GS S
Sbjct: 121 SGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157

[Close]

BLAST of Lcy13g006320 vs. NCBI nr
Match: XP_008446842.1 (PREDICTED: SKP1-like protein 12 [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-44
Identity = 96/161 (59.63%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M T+ L+S +NEI+++ E + AKQSVV+ N L   E + SNG++I IPLPNISGK+L MV
Sbjct: 1   MRTVNLRSSENEIFKVSEEV-AKQSVVVRNFL---EEDNSNGDEITIPLPNISGKLLGMV 60

Query: 61  LDWIVKHDDKKLTEKELRDWENEFVE-VDLDVMYELIMAANYMEVNELLHRACQRVADHI 120
           ++WI  H ++KL E++L  W+ +F+E +DLD+++ELIMAANY+EV +L H  CQ VAD I
Sbjct: 61  IEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKI 120

Query: 121 AGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFDSAGSSS 161
           +GK PEEIR+IFNI NDF+PEEEAEIRRQNAWVF+ +GS S
Sbjct: 121 SGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157

[Close]

BLAST of Lcy13g006320 vs. NCBI nr
Match: KAA0034704.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 190.3 bits (482), Expect = 1.3e-44
Identity = 96/161 (59.63%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M T+ L+S +NEI+++ E + AKQSVV+ N L   E + SNG++I IPLPNISGK+L MV
Sbjct: 1   MRTVNLRSSENEIFKVSEEV-AKQSVVVRNFL---EEDNSNGDEITIPLPNISGKLLGMV 60

Query: 61  LDWIVKHDDKKLTEKELRDWENEFVE-VDLDVMYELIMAANYMEVNELLHRACQRVADHI 120
           ++WI  H ++KL E++L  W+ +F+E +DLD+++ELIMAANY+EV +L H  CQ VAD I
Sbjct: 61  IEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKI 120

Query: 121 AGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFDSAGSSS 161
           +GK PEEIR+IFNI NDF+PEEEAEIRRQNAWVF+ +GS S
Sbjct: 121 SGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157

[Close]

BLAST of Lcy13g006320 vs. NCBI nr
Match: XP_004142439.1 (SKP1-like protein 14 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 8.0e-42
Identity = 93/161 (57.76%), Postives = 125/161 (77.64%), Query Frame = 0


Query: 1   MSTIQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMV 60
           M  + L+S +NEI+++ E + AKQSVV+   L   E + SN ++I IPLPNISG++L MV
Sbjct: 1   MRIVNLRSSENEIFKVSEEV-AKQSVVVRIFL---EEDDSNNDEITIPLPNISGRLLGMV 60

Query: 61  LDWIVKHDDKKLTEKELRDWENEFVE-VDLDVMYELIMAANYMEVNELLHRACQRVADHI 120
           ++WIV H ++KL E+ L  W+ +F+E +DLD+++ELIMAANY+EV +L H  CQ VAD I
Sbjct: 61  IEWIVMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKI 120

Query: 121 AGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFDSAGSSS 161
           +GK PEEIR+IFNI NDF+PEEEAEIRRQNAWVF+ +GS S
Sbjct: 121 SGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS 157

[Close]

BLAST of Lcy13g006320 vs. TAIR 10
Match: AT3G21850.1 (SKP1-like 9 )

HSP 1 Score: 124.8 bits (312), Expect = 6.3e-29
Identity = 70/159 (44.03%), Postives = 102/159 (64.15%), Query Frame = 0


Query: 1   MST--IQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLK 60
           MST  I LKS D   +E++E  A +  ++IA+M E + ++  NG    IPLPN++GK+L 
Sbjct: 1   MSTKKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTD--NG----IPLPNVTGKILA 60

Query: 61  MVLDWIVKHD---DKKLTEKELRDWENEFVEVDLDVMYELIMAANYMEVNELLHRACQRV 120
           MV+++  KH        ++ +L+ W+ EF+E D   +++LI AANY+ +  L   ACQ V
Sbjct: 61  MVIEYCNKHHVDAANPCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTV 120

Query: 121 ADHIAGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFD 155
           A+ I G  PE+IR  FNIEND +PEEEA IRR+N W F+
Sbjct: 121 AEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153

[Close]

BLAST of Lcy13g006320 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 124.4 bits (311), Expect = 8.3e-29
Identity = 72/178 (40.45%), Postives = 109/178 (61.24%), Query Frame = 0


Query: 1   MSTIQ---LKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKML 60
           MST++   LKS D E +EIDEA+A  +S  I +M  +E+    NG    IPLPN++ K+L
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVAL-ESQTIKHM--IEDDCTDNG----IPLPNVTSKIL 60

Query: 61  KMVLDWIVKHDD---------------------KKLTEKELRDWENEFVEVDLDVMYELI 120
             V+++  +H +                        ++++L+ W++EF++VD   +++LI
Sbjct: 61  SKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLI 120

Query: 121 MAANYMEVNELLHRACQRVADHIAGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFD 155
           +AANY+ +  LL   CQ VAD I GK PEEIR+ FNI+NDF+PEEE E+RR+N W F+
Sbjct: 121 LAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Lcy13g006320 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-28
Identity = 67/162 (41.36%), Postives = 103/162 (63.58%), Query Frame = 0


Query: 4   IQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMVLDW 63
           I LKS D E +E++EA+A  +S  IA+M  +E+    NG    +PLPN++ K+L  V+++
Sbjct: 6   IVLKSSDGESFEVEEAVAL-ESQTIAHM--VEDDCVDNG----VPLPNVTSKILAKVIEY 65

Query: 64  IVKH-----------DDKKLTEKELRDWENEFVEVDLDVMYELIMAANYMEVNELLHRAC 123
             +H           +    ++ +L+ W+ +F+++D   ++ELI+AANY+ +  LL   C
Sbjct: 66  CKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTC 125

Query: 124 QRVADHIAGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFD 155
           Q VAD I GK PEEIR  FNI+NDF+PEEE E+RR+N W F+
Sbjct: 126 QTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Lcy13g006320 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 121.7 bits (304), Expect = 5.4e-28
Identity = 70/163 (42.94%), Postives = 103/163 (63.19%), Query Frame = 0


Query: 4   IQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMVLDW 63
           I LKS D E +EI+EA+A K S  I +M  +E+    NG    IPLPN++G +L  V+++
Sbjct: 8   IILKSSDGESFEIEEAVAVK-SQTIKHM--IEDDCADNG----IPLPNVTGAILAKVIEY 67

Query: 64  IVKH--------DDK----KLTEKELRDWENEFVEVDLDVMYELIMAANYMEVNELLHRA 123
             KH         DK         EL++W++EFV+VD   +++LI+AANY+ +  LL   
Sbjct: 68  CKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLT 127

Query: 124 CQRVADHIAGKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFD 155
           C+ VAD + GK PE++R  FNI+ND++PEEEAE+R +N W F+
Sbjct: 128 CKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of Lcy13g006320 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-27
Identity = 65/154 (42.21%), Postives = 102/154 (66.23%), Query Frame = 0


Query: 4   IQLKSFDNEIYEIDEAIAAKQSVVIANMLELEESEKSNGEKILIPLPNISGKMLKMVLDW 63
           I L S D + +E++EA+A  QS  IA+M  +E+   ++G    IPL N+  K+L  V+++
Sbjct: 6   IVLMSSDGQSFEVEEAVAI-QSQTIAHM--VEDDCVADG----IPLANVESKILVKVIEY 65

Query: 64  IVKH---DDKKLTEKELRDWENEFVEVDLDVMYELIMAANYMEVNELLHRACQRVADHIA 123
             KH   +   ++E++L +W+ +F++++   ++ELI+AANY+ +  LL   CQ VAD I 
Sbjct: 66  CKKHHVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIK 125

Query: 124 GKQPEEIRRIFNIENDFSPEEEAEIRRQNAWVFD 155
           GK PEEIR  FNIENDF+PEEE  +R++N W F+
Sbjct: 126 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

The following BLAST results are available for this feature:

BLAST of Lcy13g006320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9WTX5	1.4e-28	44.72	S-phase kinase-associated protein 1 OS=Mus musculus OX=10090 GN=Skp1 PE=1 SV=3	[more]
Q6PEC4	1.4e-28	44.72	S-phase kinase-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Skp1 PE=1 S...	[more]
Q3ZCF3	4.0e-28	44.10	S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=2 SV=1	[more]
P63209	4.0e-28	44.10	S-phase kinase-associated protein 1 OS=Cavia porcellus OX=10141 GN=SKP1 PE=2 SV=...	[more]
Q5ZKF5	4.0e-28	44.10	S-phase kinase-associated protein 1 OS=Gallus gallus OX=9031 GN=SKP1 PE=2 SV=1	[more]

BLAST of Lcy13g006320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SU15	6.4e-45	59.63	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G...	[more]
A0A5D3CCN6	6.4e-45	59.63	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475...	[more]
A0A1S3BGP6	6.4e-45	59.63	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1	[more]
A0A0A0KRJ8	3.9e-42	57.76	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1	[more]
A0A6J1JGP3	3.6e-40	56.77	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111486777 PE=3 SV=1	[more]

BLAST of Lcy13g006320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892847.1	4.5e-45	60.87	SKP1-like protein 14 [Benincasa hispida]	[more]
TYK09255.1	1.3e-44	59.63	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]
XP_008446842.1	1.3e-44	59.63	PREDICTED: SKP1-like protein 12 [Cucumis melo]	[more]
KAA0034704.1	1.3e-44	59.63	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]
XP_004142439.1	8.0e-42	57.76	SKP1-like protein 14 [Cucumis sativus]	[more]

BLAST of Lcy13g006320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21850.1	6.3e-29	44.03	SKP1-like 9	[more]
AT5G42190.1	8.3e-29	40.45	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G75950.1	1.8e-28	41.36	S phase kinase-associated protein 1	[more]
AT1G20140.1	5.4e-28	42.94	SKP1-like 4	[more]
AT4G34210.1	1.2e-27	42.21	SKP1-like 11	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 1..104 e-value: 3.0E-20 score: 83.3
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 3.0E-47 score: 158.3
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 3..154
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 105..152 e-value: 3.6E-22 score: 78.1
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 3..68 e-value: 7.2E-13 score: 48.5
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..155 e-value: 2.5E-50 score: 172.7
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 3..70
None	No IPR available	PANTHER	PTHR11165:SF151	SKP1-LIKE PROTEIN 5	coord: 3..154
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 77..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g006320.1	Lcy13g006320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity