Lcy13g006260 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g006260
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionGlycine-rich RNA-binding protein RZ1C-like isoform X1
LocationChr13: 5542503 .. 5548029 (-)
RNA-Seq ExpressionLcy13g006260
SyntenyLcy13g006260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTCTAGGGTTCTTCAGGAATCTTTAGGAACGAGACGAGGACTCATTCTATCAGAGAATATTTCACTCTAACCGCACGAACCAGGTAATTCCTTCTCTCCACTCTCACCATTTTCTCCAAATTCTTAGTAGCAATTGTTCTTCTGGACGCCCCTTCCTTCTCATCGATTTTCGTATGACATTGTTCTTCGATTTCCCAAATTACTCTGGTTTTTGTTCTGCAGGAGGAATTTTCTGAAATACGGTGATCGATATGGCTGGGAGAGAAGAGTACCGGATATTTGTGGGAGGCTTGTCGTGGGACATCACGGAGCGTCAGCTTGAGAATGCCTTCAGTCGATTCGGCAAAATTATCGATTCTCAGGTTACCCTTTTTCATATACTCGTTGATTTGTGGTTTGATCTATATGGCTGAAAATCGAAGCAATTGAACTTTGTCTTAACTGAACACGTCGGAATGAGTGATTCATTTATTTCTTATATGAGAAGGAAATAGAGGAAACTGTAAATTGGTTATCATATGGGAAATATAATTTCTGAATTTCCACACCCTTCCCTCTAAATAACCTTGCCCTCTGATGATAACATGTCAAAACACCAGAGGTGAACTGTAAGATTAACTTTTACCATCCATAGTTTTTGTTTTCTCAGCAATTTTTTGGCACCTTTAATTTGTCTCCGACCTCTTCTCTTTCTGATGATGTTTTTTTTCCCCTTGTGAATGAGGATGCTGTTAATGAACTGTTTGGGAAGCGGTTTCACTATTCATGTAAAGTTGAATGCACCAAGATGCTGAAGGTCATAGGCTTGTATGTGCTTAAGCATTATCTGATTTAGATCTGCTGGTTAAGAGAAAGTACTACCATCTGGAAATTTGGAATATGGGTTGGCTGCTAACTCAATCTTGTGCTCTAGCTGATTGGGGTTTGGTAGGATTTTAATAAGCAAACTCAGTGACTAATTGGTTGTGTGGGATGAAAGAACTTGTCATTCTTTTGCGACAGATAAATGATTTAAAACCAGAGGAACTTTTAACAAGTCATGTGCTGATACCTGCTTGAGCAGACCTTTCTTGTTTTATCGTTCCTTGATGCTTTTGAAGAGGAAACTGAAGTCTCTAAAATGTTTGCGGATCTGACTAATAATTTTTCTAGTATTTGCTAGGACAATTTTATCTTTCTCTGGATGACTCTTAAAACCTTCATCTTATCTTTGGATTACCCTACTTTCGAATGGTATCACTAGAATTTAATGATGAAGGTTGTGTGGTTATATGAAATGATGTACATGGGGCAGAAGAACTGGGCTAGATTATCATATTGACTCAGATAATTGGATTGCTAAGTCATCTAATCTCAGAAAAAATTCAGAAGCCATCTGTTATTGGATGGAAAGTTTTGTTGTATGAAGATGGTTTCTTACTACTGGCTGCTTCATTGTAATGTTTTCTTCATTTTCCTATCCTTTACTGTGATTATTATCAAAGTGAGAGATAGCTGGTTTTCTCATCTGCTAGTTTCACTGGTACTGAGAATTGTCCATTTGATTCTAAGATGAAGAATACATTAAAGTGGTGCATCCTTTTTGGCTAAGATTTACGATAGCATGCAAGGTACAGTTTTTGGAGATCAATAGCCATTTCATCCTTTTGAGTGGACACTGCATCTTTGAATTTCATTTTGCTGAGATGAAGTTGTCAGAGTCCCCTACTTTTCCAGGCATGATCGCAAAGTTGTTCGTACTGTTTTCTGTTTAGTGGTTAATGTGGCTAGAAATTGTACTAGCAATGCCAGGCTAAGCAGTTCAAACATTTGCTGAAGAATTGGCCAAACTGCATTTGTAGTCTTTAGTTTGACATGTTTTCCTCATTGTATGATGTCAGCTGAATTGTAAATGTCAGTTTGAGGGCCTTTTCTGATCAGTTGTTGTCTTCTCTGGTGAGCTTGTTAAGATACTATGCAGTGGACATGGACGGTGGACCTTGATATGGTTATTATTGTCATTTGTACCTTACAGAGCTCTAGAGGCATCTGATGCTGGACTTCGTTTTCTGTTATGACCAGGAATTATGAATATCTATTTGTTGGGTATAGTACTGCAGCAGAGCAATTGGATCTGAAGCTAAATTTGAGTTTTATAGGTGCAGTGTTGCAGGTTGGGGTTTTTTTTGATGGGTTATTTAGTGGAATGGATTTAGGTTGTGGCGAACTGAGAAATTATGGGGCTGTAGGTTTTCATTCATTCGTTTTCATCCTTTTCCCGTTGTTTGAATCTTTGAAGTTGTTCCTCAAGATCAGTCAAGAATGCTGCTGTTTTGTTTTCCTTTTGTATGGTTTGCTAGTTCCCTCATTGTATACTCATTGACAGTACTTTGTGTTAGCAGAGTTTGAATTCCTTGATTATTAATTCAATTTAAACTTAAAGAGGGGGTGGAATATGCCCGTAATTTAGTACAGCCTCTTGTCCACAAACTGAGGGATCTCAATTACACAATGAGCTGGCATCTCCATTGCTTGAAATTTTACTGTCTTGGTGAACCTTGCCTACGTCTCCTAGAGTATTCATCCTGGAACATGTGTTGCTTAAGGAATCATCTTTCTTTTTTGAGCTTTATTCCACCATCTATTTCACATCACTTCCAAATGGTATTGATCGCGTGACAGCAAGATGACTGTAAACTTCTTGAGTTTCTCTGATGTATAATTTGTCAAGGTTTTCAAATCCCTTAGTTGGAGTAATACACATCCAGTGAAGTGTTTGTACTGGTTTTTTTTGAGTTAACATTGACTTTGAGTGCCATTTTGGATGCCTGCCTGCACAGAAGCCCATGTAGCCATTTTTTTATGGAATTGTTTCTTTTGAATAAAAGGGGACTAGAGGTCTAAGATACTCCCACTTCAGAAGATAGCTAAAGATGTGCAGGTTCTTTTGTTTTGTTAAGGAATTATGTAACATGTTGCAATGAGTTCTTCATAACTGGAAGAAAAAAGTAAGTTGTCAGACTGTTTAGTTATATATTTTGAAATATTTTTATGCTGTTACTATCGATTACTATAATTTTAAAATTTGAACGAATTCTCTCTTTGATGTTTTACTTTTTATCGTCTATACAGCATGTGATAGACTGAATGTCATCACCAGCTTGTACCCATAACGTATTCTATTATTCTGCATTCTCTTAATGCAATGTAGGTCTGTAACCATATTTTCTGAATGATAATCTGATGGAGTTTTAACCTCTATTCTTATTAGTTGTTGGAGTTTGAAACCTCTAACTTGTAGATCATGGTAACTGTTTGGTATTGATTTTATACCTCTTGATGATGTCACGATTGTGTTTGTGGCTTCAAGCCCAAGATTGGGTTTATTTCCATTGCTCTTACATTAATCTCGTGTTCTTTAACTCTGAACTTTTAAGGGTTGTCACCTGGGATCTTAAATACCAAAAAAAATCCACCTTATATTGGTGGTGGTTAGGCCATAGAGTTCATCTCAAAACCTGTCATCTTTGAATTTTGGGGAGGTGGGAATTCTGGGCTAGTTATTTATATTTAATTATGGTGGACTTCATCCCTGTATCTTTGATGCCAATTTTTGTTATGTTAGTAAAATATTCAAACTATGCTGATGGCTGGTAGGGTTTAAGTTGTAACTTAGTATATATTATTAGCATGTGATGTACTTTACTAGCTCTGGTTTAATCACTTGATTTAAGTTTTATTGGCTGTTCAATTGATTGGTGCAAACGTCCTCTTTGGCGTTCCTGTAGATCATGTTGGAAAAGAATACAGGCCGCCCACGTGGCTTTGGGTTTATTACATTTTCAGATCGCCGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAAGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATAGACCATGGTTACAGGGGGGGAGGCTACTCAACTGGTGGCAGGGGTAACTATGGGGGTGGGGGAGGAGATAGATCTGCAAGGCAAGATGAATGCTTTAAATGTGGGCGTCTTGGACACTGGGCTAGAGATTGTCCTTCAGTGGGTGGTGGCCGAGGAAGGGGAGGAGACTCATTTCTTGCACGTTCTCGGCTTGGGGATAGTGATCGTGGGGATCGCTTTGCTGGAGATAATAATCGATATGTGGATGATCGTTATGAAGGTGGTGGGCGCTTTGGAGATAGAGATCGTTTTGACAGCAGCAGGGACAACAAATATGGAGGACGTGATCGCTATGTTAGCGACAGGTACTGACCCATACTTTCTATGGATTTGAGGCATTATTTGCCTAGTATATATCTGTGGTGATGATAGTGGTTATTTTTCTTAGCCTTAAAATTAATGCTTTTAAAGTAATTATCACAAGGAAATGATAAATTGACATAAGAGTGATCCAATATCGTTTCTCTTGTTGATTGTGACTTCACAATTATTTACTTTCAGCATCATAGTTAATTAATCCTCTCATTCCTGATTATATGCACAAATCTGCAGGTACCCACCTGGTGGAGATCGCTTTGGAAGCAGTCGGTACAATAATGATTCTGATCGATTTCCTGTAAATGGCTATGGCAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTATGGAAGTGGAGGTCCAGCACGTGACGAGGGAAGAAGCTACAGGAACAGAGCAGCTCCTTATGACCGCCCAAGCAGAGCAGGGCGGCCTTCATCATATGATCGTTATTGAATGTTTATTGTTAGCACATTATCAGGTTAATCTAGTAAGTACCACATGCTCGGTGTTGTGCTGTTAGTTATCTAGGATCTAGTGGCAGTAGCATGGCCTGACAGACAGATTGTTGCGGTTTCGTCTAGCTTTCATGTATCTGAGTTTTTCTTCAGAGAGACAGATAAATGCTCTAAAGAACGATGAATGGAAAGAGAACAGATTTAAGTTGACCATTTTTGTGATTCTAAAACGTTGAGCTGAATCTCAGAGCCAGCAACATAACAAAGGTTGAGTTGAGGACTCGAGGCTCGTTTGATTCGTAATCCATAAACAAATTAGTAAATACAACTGTAGAAGCCAGAGGCAACATGTATGAAAGGGCTATCATAGAGGGAATAAAAATGACAGATGAAGCTGGAAATTGGCCTCCCAATGAGCAGCAATGGTAGAACAGAAGTCTACTTTCAGTTGAGAGTGGAAAAGAAAGAGCTCCTTTAATGGAAGAAAAATGGTTTGGTTTGGCCCACAACCATTCACATGGGAAGTATTCAATTGGAAATATTGACCTGCTTTTCTCCTATATTCTTACATGTATTTCCAATGGCACTATTTTCTTCCACTCGTGTTCATGATTTTCTCTTTTAACTTTTGGTAAAATGAGAAAGAGATAAGTGTAGATTTTTTGAATGGTTGACTCTACAAACCCCATTTCCTGCAAATTGAAAAATGTAATCATTCAGGATTCGTATCCTCTCATCCCTATTTTTTCATTTATCAACATAAG

mRNA sequence

CTTTTCTAGGGTTCTTCAGGAATCTTTAGGAACGAGACGAGGACTCATTCTATCAGAGAATATTTCACTCTAACCGCACGAACCAGGAGGAATTTTCTGAAATACGGTGATCGATATGGCTGGGAGAGAAGAGTACCGGATATTTGTGGGAGGCTTGTCGTGGGACATCACGGAGCGTCAGCTTGAGAATGCCTTCAGTCGATTCGGCAAAATTATCGATTCTCAGATCATGTTGGAAAAGAATACAGGCCGCCCACGTGGCTTTGGGTTTATTACATTTTCAGATCGCCGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAAGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATAGACCATGGTTACAGGGGGGGAGGCTACTCAACTGGTGGCAGGGGTAACTATGGGGGTGGGGGAGGAGATAGATCTGCAAGGCAAGATGAATGCTTTAAATGTGGGCGTCTTGGACACTGGGCTAGAGATTGTCCTTCAGTGGGTGGTGGCCGAGGAAGGGGAGGAGACTCATTTCTTGCACGTTCTCGGCTTGGGGATAGTGATCGTGGGGATCGCTTTGCTGGAGATAATAATCGATATGTGGATGATCGTTATGAAGGTGGTGGGCGCTTTGGAGATAGAGATCGTTTTGACAGCAGCAGGGACAACAAATATGGAGGACGTGATCGCTATGTTAGCGACAGGTACCCACCTGGTGGAGATCGCTTTGGAAGCAGTCGGTACAATAATGATTCTGATCGATTTCCTGTAAATGGCTATGGCAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTATGGAAGTGGAGGTCCAGCACGTGACGAGGGAAGAAGCTACAGGAACAGAGCAGCTCCTTATGACCGCCCAAGCAGAGCAGGGCGGCCTTCATCATATGATCGTTATTGAATGTTTATTGTTAGCACATTATCAGGTTAATCTAGTAAGTACCACATGCTCGGTGTTGTGCTGTTAGTTATCTAGGATCTAGTGGCAGTAGCATGGCCTGACAGACAGATTGTTGCGGTTTCGTCTAGCTTTCATGTATCTGAGTTTTTCTTCAGAGAGACAGATAAATGCTCTAAAGAACGATGAATGGAAAGAGAACAGATTTAAGTTGACCATTTTTGTGATTCTAAAACGTTGAGCTGAATCTCAGAGCCAGCAACATAACAAAGGTTGAGTTGAGGACTCGAGGCTCGTTTGATTCGTAATCCATAAACAAATTAGTAAATACAACTGTAGAAGCCAGAGGCAACATGTATGAAAGGGCTATCATAGAGGGAATAAAAATGACAGATGAAGCTGGAAATTGGCCTCCCAATGAGCAGCAATGGTAGAACAGAAGTCTACTTTCAGTTGAGAGTGGAAAAGAAAGAGCTCCTTTAATGGAAGAAAAATGGTTTGGTTTGGCCCACAACCATTCACATGGGAAGTATTCAATTGGAAATATTGACCTGCTTTTCTCCTATATTCTTACATGTATTTCCAATGGCACTATTTTCTTCCACTCGTGTTCATGATTTTCTCTTTTAACTTTTGGTAAAATGAGAAAGAGATAAGTGTAGATTTTTTGAATGGTTGACTCTACAAACCCCATTTCCTGCAAATTGAAAAATGTAATCATTCAGGATTCGTATCCTCTCATCCCTATTTTTTCATTTATCAACATAAG

Coding sequence (CDS)

ATGGCTGGGAGAGAAGAGTACCGGATATTTGTGGGAGGCTTGTCGTGGGACATCACGGAGCGTCAGCTTGAGAATGCCTTCAGTCGATTCGGCAAAATTATCGATTCTCAGATCATGTTGGAAAAGAATACAGGCCGCCCACGTGGCTTTGGGTTTATTACATTTTCAGATCGCCGGGGAATGGATGATGCTATCAGAGAGATGCATGGACAAGAATTTGGAGAACGAATCATTTCAGTGAACAAGGCTGAACCTAAAATGGGAGAAGATATAGACCATGGTTACAGGGGGGGAGGCTACTCAACTGGTGGCAGGGGTAACTATGGGGGTGGGGGAGGAGATAGATCTGCAAGGCAAGATGAATGCTTTAAATGTGGGCGTCTTGGACACTGGGCTAGAGATTGTCCTTCAGTGGGTGGTGGCCGAGGAAGGGGAGGAGACTCATTTCTTGCACGTTCTCGGCTTGGGGATAGTGATCGTGGGGATCGCTTTGCTGGAGATAATAATCGATATGTGGATGATCGTTATGAAGGTGGTGGGCGCTTTGGAGATAGAGATCGTTTTGACAGCAGCAGGGACAACAAATATGGAGGACGTGATCGCTATGTTAGCGACAGGTACCCACCTGGTGGAGATCGCTTTGGAAGCAGTCGGTACAATAATGATTCTGATCGATTTCCTGTAAATGGCTATGGCAAAGATAGGGGCTATTATAGAGATGGTGGACCTCGTGGGGTTGATAAGTATGGAAGTGGAGGTCCAGCACGTGACGAGGGAAGAAGCTACAGGAACAGAGCAGCTCCTTATGACCGCCCAAGCAGAGCAGGGCGGCCTTCATCATATGATCGTTATTGA

Protein sequence

MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAIREMHGQEFGERIISVNKAEPKMGEDIDHGYRGGGYSTGGRGNYGGGGGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGGGRFGDRDRFDSSRDNKYGGRDRYVSDRYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGYYRDGGPRGVDKYGSGGPARDEGRSYRNRAAPYDRPSRAGRPSSYDRY
Homology
[Close]
BLAST of Lcy13g006260 vs. ExPASy Swiss-Prot
Match: Q8RWN5 (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.3e-77
Identity = 176/312 (56.41%), Postives = 214/312 (68.59%), Query Frame = 0 

Query: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MA +E  RIFVGGLS ++T+R LE AFSRFG I+D QIMLE++TGR RGFGFITF+DRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGED--IDHGYRGG---GYSTGGRGNYGGGGGDR 120
           MD++IREMHG++FG+R+ISVN+AEPK+G D    HG RGG   GYS  G+G++GGGGG  
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 S-ARQDECFKCGRLGHWARDCPSVGGGRGR--GGDSFLARSRLGDSDRGDRFAG-----D 180
               +DECFKCGR+GHWARDCPS GGGRG   GG S  A +  G   R DR+A      D
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 NNRYVDDRYEGGGRFGDRDRFDSSRDNKYGGRDRYVSDRYPPGGDRF-GSSRYNNDSDRF 240
             RY+DDRY+G  R+G RDRFDS     Y  RDRY SDRY    DRF G  RY+  SDR+
Sbjct: 181 RERYIDDRYDGAARYGARDRFDSR--EAYIPRDRYASDRYAAPADRFAGGDRYSRGSDRY 240

Query: 241 PVNGYGKDRGYYRDGGP-RGVDKYG---SGGPAR---DEGRSYRNRA-APYDRPSRAG-- 285
           P   Y K R + RD  P  G D+YG   +GGP R   +EGR +R+RA APY+RPSR+G  
Sbjct: 241 PPGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRSGGG 300

[Close]
BLAST of Lcy13g006260 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 3.3e-70
Identity = 161/299 (53.85%), Postives = 193/299 (64.55%), Query Frame = 0 

Query: 3   GREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMD 62
           G  E RIFVGGLSWD+TERQLE+ F R+GKI + QIM+ ++TGRPRGFGFITF+DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 63  DAIREMHGQEFGERIISVNKAEPKM-GEDIDHGYRGGGYSTGGRGNYGGGGGDRSARQDE 122
           DAI+ MHG+E G ++ISVNKAEPK+ GED+D   +GGGYS+ G+G            +DE
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT-----------EDE 127

Query: 123 CFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSD-RGDRFAGDN------------ 182
           CFKC R GHWARDCPS G  R R       RSR+GD D   DR+ GD             
Sbjct: 128 CFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRY-GDRDLEREREREREF 187

Query: 183 NRYVDDRYE-GGGRFGDRDRFDSSRDNKYGGRDRYVSDRYPPGGDRFGSSRYNNDSDRFP 242
           +RY+D R +  GGR+  RDRFDS   +KY  RD Y  +RY P GDRF S RY        
Sbjct: 188 DRYMDGRRDRDGGRYSYRDRFDSG--DKYEPRDHYPFERYAPPGDRFVSDRYGMPEHHLE 247

Query: 243 VNGYGKDRGYYRDGGPRGV-DKYGSGGPARDEGRSYRNRAAPYDRPSR-AGRPSSYDRY 285
               G++R Y RD   R   D+YG  GP RDEGR YR+R  PYDRPSR  GRPSSY+R+
Sbjct: 248 NEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]
BLAST of Lcy13g006260 vs. ExPASy Swiss-Prot
Match: Q9LIN3 (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-32
Identity = 107/292 (36.64%), Postives = 153/292 (52.40%), Query Frame = 0 

Query: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           M+   EYR F+GGL+W  ++R L +AF ++G +++++++L+K +GR RGFGFITF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMG-----EDIDHGYRGGGYSTGGRGNYGGGGGDR 120
           MD+AI  M+G +   R I+V+KA+P  G      D D G   G      R + G GGGD 
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGD- 120

Query: 121 SARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDNNRYVDDR 180
                 CFKCG+ GH+AR+CPS                   +S R               
Sbjct: 121 ------CFKCGKPGHFARECPS-------------------ESSR--------------- 180

Query: 181 YEGGGRFGDRDRFDSSRDNKYGGRDRYVSDRYPPGGDRFGS--SRYNNDSDRFPVNGYGK 240
            +GGGRF  +D   SS+D++YG +D    DRY    DR+G+   RY++  DR+       
Sbjct: 181 -DGGGRFSSKDDRYSSKDDRYGAKD----DRYGAKEDRYGAKDDRYSSKDDRYSSK---D 240

Query: 241 DRGYYRDGGPR--GVDKYG--SGGPARDEGR-----SYRNRAAPYDRPSRAG 277
           DR   RDGG    G D+ G  +GG +RD G        R+  APYDRP   G
Sbjct: 241 DRYGSRDGGGSRYGPDRSGERAGGRSRDGGSRGAPGGERHSRAPYDRPRAGG 243

[Close]
BLAST of Lcy13g006260 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-23
Identity = 71/158 (44.94%), Postives = 92/158 (58.23%), Query Frame = 0 

Query: 2   AGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGM 61
           +G  EYR FVGGL+W   +R LE AF+++G +IDS+I+ ++ TGR RGFGF+TF D + M
Sbjct: 3   SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62

Query: 62  DDAIREMHGQEFGERIISVNKAEPK-MGEDIDH------GYR---GGGYSTGGRGNYGGG 121
            DAI  M+GQ+   R I+VN+A+ +  G    H      GYR   GGGYS GG G+YGGG
Sbjct: 63  KDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYS-GGGGSYGGG 122

Query: 122 GGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSF 150
           GG R          G          S GGGR  GG  +
Sbjct: 123 GGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGY 159

[Close]
BLAST of Lcy13g006260 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-23
Identity = 70/164 (42.68%), Postives = 93/164 (56.71%), Query Frame = 0 

Query: 6   EYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMDDAI 65
           EYR FVGGL+W      LE AF+ FG++IDS+++ ++ TGR RGFGF+TFS  + M DAI
Sbjct: 7   EYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAI 66

Query: 66  REMHGQEFGERIISVNKAEPKMGEDIDHGYRGGGYSTGGR--GNYGGGGGDRSARQDECF 125
             M+G+E   R I+VN+A+ + G     GY GGG   GGR  G YGGGGG    R++   
Sbjct: 67  ENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGGGGYGGREGGGYGGGGGGYGGRRE--- 126

Query: 126 KCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGD 168
             G  G+        GGG G GG  +  R   G    G  + G+
Sbjct: 127 --GGGGYG-------GGGYGGGGGGYGGREGGGGYGGGGGYGGN 158

[Close]
BLAST of Lcy13g006260 vs. ExPASy TrEMBL
Match: A0A1S3BGN5 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489439 PE=4 SV=1)

HSP 1 Score: 550.4 bits (1417), Expect = 4.3e-153
Identity = 273/285 (95.79%), Postives = 277/285 (97.19%), Query Frame = 0 

Query: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGREEYRIFVGGLSWDITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDIDHGYRGGGYSTGGRGNYGGGGGDRSARQD 120
           MDDAIREMHGQEFGERIISVNKAEPKMGED+DHGYRGGGYSTGGRG+YGGGGGDRSARQD
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSTGGRGSYGGGGGDRSARQD 120

Query: 121 ECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGGG 180
           ECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGD DRGDRFAGD NRYVDDRYEGGG
Sbjct: 121 ECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDGDRGDRFAGDTNRYVDDRYEGGG 180

Query: 181 RFGDRDRFD-SSRDNKYGGRDRYVSDRYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGYYR 240
           RFGDRDRFD SSRDNKYG RDRYVSDRYPPGGDRFGS RYNNDSDRFPVNGYGKDRGYYR
Sbjct: 181 RFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGSGRYNNDSDRFPVNGYGKDRGYYR 240

Query: 241 DGGPRGVDKYGSGGPARDEGRSYRNRAAPYDRPSRAGRPSSYDRY 285
           D GPRGVDKYGSGGPARDEGRSYRNR APYDRPSR GRPSS+DRY
Sbjct: 241 D-GPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 284

[Close]
BLAST of Lcy13g006260 vs. ExPASy TrEMBL
Match: A0A5D3CG30 (Glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002430 PE=4 SV=1)

HSP 1 Score: 550.4 bits (1417), Expect = 4.3e-153
Identity = 273/285 (95.79%), Postives = 277/285 (97.19%), Query Frame = 0 

Query: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGREEYRIFVGGLSWDITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDIDHGYRGGGYSTGGRGNYGGGGGDRSARQD 120
           MDDAIREMHGQEFGERIISVNKAEPKMGED+DHGYRGGGYSTGGRG+YGGGGGDRSARQD
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSTGGRGSYGGGGGDRSARQD 120

Query: 121 ECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGGG 180
           ECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGD DRGDRFAGD NRYVDDRYEGGG
Sbjct: 121 ECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDGDRGDRFAGDTNRYVDDRYEGGG 180

Query: 181 RFGDRDRFD-SSRDNKYGGRDRYVSDRYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGYYR 240
           RFGDRDRFD SSRDNKYG RDRYVSDRYPPGGDRFGS RYNNDSDRFPVNGYGKDRGYYR
Sbjct: 181 RFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGSGRYNNDSDRFPVNGYGKDRGYYR 240

Query: 241 DGGPRGVDKYGSGGPARDEGRSYRNRAAPYDRPSRAGRPSSYDRY 285
           D GPRGVDKYGSGGPARDEGRSYRNR APYDRPSR GRPSS+DRY
Sbjct: 241 D-GPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 284

[Close]
BLAST of Lcy13g006260 vs. ExPASy TrEMBL
Match: A0A6J1CFE7 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010282 PE=4 SV=1)

HSP 1 Score: 522.3 bits (1344), Expect = 1.3e-144
Identity = 269/301 (89.37%), Postives = 273/301 (90.70%), Query Frame = 0 

Query: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGR RGFGFITFSDRRG
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRRRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDIDHGYRGGGYSTGGR-GNYGGGGGDRSARQ 120
           MDDAIREMHGQE GERIISVNKAEPKMGEDIDHGYRG GYSTGGR G+YGGGGGD+SARQ
Sbjct: 61  MDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGYSTGGRGGSYGGGGGDKSARQ 120

Query: 121 DECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGG 180
           DECFKCGRLGHWARDC SVGGGRGR GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE G
Sbjct: 121 DECFKCGRLGHWARDCHSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-G 180

Query: 181 GRFGDRDRFDSSRDNKYGGRDRYVSDRYPPGGDRFGSSRYNNDSDRFPVNGYGKDRG--- 240
           GRFGDRDRFDSSRDNKY  RDRYVSDRYPP GDRFGSS YNNDSDRFPVNGYGKDRG   
Sbjct: 181 GRFGDRDRFDSSRDNKYASRDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYR 240

Query: 241 -------------YYRDGGPRGVDKYGSGGPARDEGRSYRNRAAPYDRPSRAGRPSSYDR 285
                        YYRDGGPRG+DKYGSGGPARDEGRSYRNR APYDRPSRAGRPSS+DR
Sbjct: 241 DGFPVNGYGKDRVYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDR 299

[Close]
BLAST of Lcy13g006260 vs. ExPASy TrEMBL
Match: A0A6J1GY86 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458292 PE=4 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 1.6e-144
Identity = 259/284 (91.20%), Postives = 264/284 (92.96%), Query Frame = 0 

Query: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGREEYRIFVGGLSWDITER LENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDIDHGYRGGGYSTGGRGNYGGGGGDRSARQD 120
           MDDAIREMHG+EFGERIISVNKAEPKMGEDIDHGYR              GGGDRSARQD
Sbjct: 61  MDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYR--------------GGGDRSARQD 120

Query: 121 ECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGGG 180
           ECFKCGR GHWARDCPSVGGGRGRGGDSFL RSRLGDSDRGDRFAGDNNRYVDDRYEGGG
Sbjct: 121 ECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYVDDRYEGGG 180

Query: 181 RFGDRDRFDSSRDNKYGGRDRYVSDRYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGYYRD 240
           RFGDRDRFD+SRD+KYG RDRYVS+RYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGYYRD
Sbjct: 181 RFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGYYRD 240

Query: 241 GGPRGVDKYGSGGPARDEGRSYRNRAAPYDRPSRAGRPSSYDRY 285
           GGPRGVDKYGSGGPARDEGRSYRNR APYDRPSR GRPSS+DRY
Sbjct: 241 GGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 270

[Close]
BLAST of Lcy13g006260 vs. ExPASy TrEMBL
Match: A0A6J1KMD7 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496986 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 2.1e-144
Identity = 258/284 (90.85%), Postives = 264/284 (92.96%), Query Frame = 0 

Query: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGREEYRIFVGGLSWDITER LENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGREEYRIFVGGLSWDITERLLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDIDHGYRGGGYSTGGRGNYGGGGGDRSARQD 120
           MDDAIREMHG+EFGERIISVNKAEPKMGEDIDHGYR              GGGDRSARQD
Sbjct: 61  MDDAIREMHGREFGERIISVNKAEPKMGEDIDHGYR--------------GGGDRSARQD 120

Query: 121 ECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGGG 180
           ECFKCGR GHWARDCPSVGGGRGRGGDSFL RSRLGDSDRGDRFAGDNNRYVDDRYEGGG
Sbjct: 121 ECFKCGRHGHWARDCPSVGGGRGRGGDSFLTRSRLGDSDRGDRFAGDNNRYVDDRYEGGG 180

Query: 181 RFGDRDRFDSSRDNKYGGRDRYVSDRYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGYYRD 240
           RFGDRDRFD+SRD+KYG RDRYVS+RYPPGGDRFGSSRYNNDSDRFP+NGYGKDRGYYRD
Sbjct: 181 RFGDRDRFDNSRDSKYGTRDRYVSERYPPGGDRFGSSRYNNDSDRFPINGYGKDRGYYRD 240

Query: 241 GGPRGVDKYGSGGPARDEGRSYRNRAAPYDRPSRAGRPSSYDRY 285
           GGPRGVDKYGSGGPARDEGRSYRNR APYDRPSR GRPSS+DRY
Sbjct: 241 GGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 270

[Close]
BLAST of Lcy13g006260 vs. NCBI nr
Match: XP_038892830.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Benincasa hispida])

HSP 1 Score: 552.4 bits (1422), Expect = 2.3e-153
Identity = 274/287 (95.47%), Postives = 281/287 (97.91%), Query Frame = 0 

Query: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGREEYRIFVGGLSWDITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDIDHGYRGGGYSTGGRGNY--GGGGGDRSAR 120
           MDDAIREMHGQEFGERIISVNKAEPKMGED+DHGYRGGGYSTGGRG+Y  GGGGGDRSAR
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSTGGRGSYGGGGGGGDRSAR 120

Query: 121 QDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEG 180
           QDECFKCGRLGHWARDCPSVGGGRGRGGDSFLAR+RLGDSDRGDRFAGDNNRYVDDRYEG
Sbjct: 121 QDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARARLGDSDRGDRFAGDNNRYVDDRYEG 180

Query: 181 GGRFGDRDRFD-SSRDNKYGGRDRYVSDRYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGY 240
           GGRFGDRDRFD SSRDNKYG RDRYVS+RYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGY
Sbjct: 181 GGRFGDRDRFDSSSRDNKYGSRDRYVSERYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGY 240

Query: 241 YRDGGPRGVDKYGSGGPARDEGRSYRNRAAPYDRPSRAGRPSSYDRY 285
           YRDGGPRGVDKYGSGGPAR+EGRSYRNR APYDRPSR GRPSS+DRY
Sbjct: 241 YRDGGPRGVDKYGSGGPARNEGRSYRNRPAPYDRPSRGGRPSSFDRY 287

[Close]
BLAST of Lcy13g006260 vs. NCBI nr
Match: XP_008446829.1 (PREDICTED: glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucumis melo] >XP_008446830.1 PREDICTED: glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucumis melo] >KAA0034698.1 glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucumis melo var. makuwa] >TYK09249.1 glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 550.4 bits (1417), Expect = 8.9e-153
Identity = 273/285 (95.79%), Postives = 277/285 (97.19%), Query Frame = 0 

Query: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGREEYRIFVGGLSWDITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDIDHGYRGGGYSTGGRGNYGGGGGDRSARQD 120
           MDDAIREMHGQEFGERIISVNKAEPKMGED+DHGYRGGGYSTGGRG+YGGGGGDRSARQD
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSTGGRGSYGGGGGDRSARQD 120

Query: 121 ECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGGG 180
           ECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGD DRGDRFAGD NRYVDDRYEGGG
Sbjct: 121 ECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDGDRGDRFAGDTNRYVDDRYEGGG 180

Query: 181 RFGDRDRFD-SSRDNKYGGRDRYVSDRYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGYYR 240
           RFGDRDRFD SSRDNKYG RDRYVSDRYPPGGDRFGS RYNNDSDRFPVNGYGKDRGYYR
Sbjct: 181 RFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGSGRYNNDSDRFPVNGYGKDRGYYR 240

Query: 241 DGGPRGVDKYGSGGPARDEGRSYRNRAAPYDRPSRAGRPSSYDRY 285
           D GPRGVDKYGSGGPARDEGRSYRNR APYDRPSR GRPSS+DRY
Sbjct: 241 D-GPRGVDKYGSGGPARDEGRSYRNRPAPYDRPSRGGRPSSFDRY 284

[Close]
BLAST of Lcy13g006260 vs. NCBI nr
Match: KAE8648851.1 (hypothetical protein Csa_008374 [Cucumis sativus])

HSP 1 Score: 549.7 bits (1415), Expect = 1.5e-152
Identity = 273/286 (95.45%), Postives = 279/286 (97.55%), Query Frame = 0 

Query: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGREEYRIFVGGLSWDITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 424 MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 483

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDIDHGYRGGGYSTGGRGNY-GGGGGDRSARQ 120
           MDDAIREMHGQEFGERIISVNKAEPKMGED+DHGYRGGGYSTGGRG+Y GGGGGDRSARQ
Sbjct: 484 MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSTGGRGSYGGGGGGDRSARQ 543

Query: 121 DECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGG 180
           DECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGD NRYVDDRY+GG
Sbjct: 544 DECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDANRYVDDRYDGG 603

Query: 181 GRFGDRDRFD-SSRDNKYGGRDRYVSDRYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGYY 240
           GRFGDRDRFD SSRDNKYG RDRYVSDRYPPGGDRFGSSRY NDSDRFPVNGYGKDRGYY
Sbjct: 604 GRFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGSSRYTNDSDRFPVNGYGKDRGYY 663

Query: 241 RDGGPRGVDKYGSGGPARDEGRSYRNRAAPYDRPSRAGRPSSYDRY 285
           RDGGPRGVDKYGSGGPARDEGRSYRNR APYDRP+R GRPSS+DRY
Sbjct: 664 RDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPNRGGRPSSFDRY 709

[Close]
BLAST of Lcy13g006260 vs. NCBI nr
Match: XP_004142412.1 (glycine-rich RNA-binding protein RZ1C isoform X1 [Cucumis sativus] >XP_011655869.1 glycine-rich RNA-binding protein RZ1C isoform X1 [Cucumis sativus])

HSP 1 Score: 549.7 bits (1415), Expect = 1.5e-152
Identity = 273/286 (95.45%), Postives = 279/286 (97.55%), Query Frame = 0 

Query: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGREEYRIFVGGLSWDITERQLENAF+RFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFNRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDIDHGYRGGGYSTGGRGNY-GGGGGDRSARQ 120
           MDDAIREMHGQEFGERIISVNKAEPKMGED+DHGYRGGGYSTGGRG+Y GGGGGDRSARQ
Sbjct: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDMDHGYRGGGYSTGGRGSYGGGGGGDRSARQ 120

Query: 121 DECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGG 180
           DECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGD NRYVDDRY+GG
Sbjct: 121 DECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDANRYVDDRYDGG 180

Query: 181 GRFGDRDRFD-SSRDNKYGGRDRYVSDRYPPGGDRFGSSRYNNDSDRFPVNGYGKDRGYY 240
           GRFGDRDRFD SSRDNKYG RDRYVSDRYPPGGDRFGSSRY NDSDRFPVNGYGKDRGYY
Sbjct: 181 GRFGDRDRFDSSSRDNKYGSRDRYVSDRYPPGGDRFGSSRYTNDSDRFPVNGYGKDRGYY 240

Query: 241 RDGGPRGVDKYGSGGPARDEGRSYRNRAAPYDRPSRAGRPSSYDRY 285
           RDGGPRGVDKYGSGGPARDEGRSYRNR APYDRP+R GRPSS+DRY
Sbjct: 241 RDGGPRGVDKYGSGGPARDEGRSYRNRPAPYDRPNRGGRPSSFDRY 286

[Close]
BLAST of Lcy13g006260 vs. NCBI nr
Match: XP_022139343.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Momordica charantia])

HSP 1 Score: 522.3 bits (1344), Expect = 2.6e-144
Identity = 269/301 (89.37%), Postives = 273/301 (90.70%), Query Frame = 0 

Query: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGR RGFGFITFSDRRG
Sbjct: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRRRGFGFITFSDRRG 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGEDIDHGYRGGGYSTGGR-GNYGGGGGDRSARQ 120
           MDDAIREMHGQE GERIISVNKAEPKMGEDIDHGYRG GYSTGGR G+YGGGGGD+SARQ
Sbjct: 61  MDDAIREMHGQELGERIISVNKAEPKMGEDIDHGYRGAGYSTGGRGGSYGGGGGDKSARQ 120

Query: 121 DECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDNNRYVDDRYEGG 180
           DECFKCGRLGHWARDC SVGGGRGR GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE G
Sbjct: 121 DECFKCGRLGHWARDCHSVGGGRGR-GDSFLARSRLGDSDRGDRFAGDNNRYVDDRYE-G 180

Query: 181 GRFGDRDRFDSSRDNKYGGRDRYVSDRYPPGGDRFGSSRYNNDSDRFPVNGYGKDRG--- 240
           GRFGDRDRFDSSRDNKY  RDRYVSDRYPP GDRFGSS YNNDSDRFPVNGYGKDRG   
Sbjct: 181 GRFGDRDRFDSSRDNKYASRDRYVSDRYPPSGDRFGSSGYNNDSDRFPVNGYGKDRGYYR 240

Query: 241 -------------YYRDGGPRGVDKYGSGGPARDEGRSYRNRAAPYDRPSRAGRPSSYDR 285
                        YYRDGGPRG+DKYGSGGPARDEGRSYRNR APYDRPSRAGRPSS+DR
Sbjct: 241 DGFPVNGYGKDRVYYRDGGPRGIDKYGSGGPARDEGRSYRNRPAPYDRPSRAGRPSSFDR 299

[Close]
BLAST of Lcy13g006260 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 291.2 bits (744), Expect = 9.0e-79
Identity = 176/312 (56.41%), Postives = 214/312 (68.59%), Query Frame = 0 

Query: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           MA +E  RIFVGGLS ++T+R LE AFSRFG I+D QIMLE++TGR RGFGFITF+DRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMGED--IDHGYRGG---GYSTGGRGNYGGGGGDR 120
           MD++IREMHG++FG+R+ISVN+AEPK+G D    HG RGG   GYS  G+G++GGGGG  
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 S-ARQDECFKCGRLGHWARDCPSVGGGRGR--GGDSFLARSRLGDSDRGDRFAG-----D 180
               +DECFKCGR+GHWARDCPS GGGRG   GG S  A +  G   R DR+A      D
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 NNRYVDDRYEGGGRFGDRDRFDSSRDNKYGGRDRYVSDRYPPGGDRF-GSSRYNNDSDRF 240
             RY+DDRY+G  R+G RDRFDS     Y  RDRY SDRY    DRF G  RY+  SDR+
Sbjct: 181 RERYIDDRYDGAARYGARDRFDSR--EAYIPRDRYASDRYAAPADRFAGGDRYSRGSDRY 240

Query: 241 PVNGYGKDRGYYRDGGP-RGVDKYG---SGGPAR---DEGRSYRNRA-APYDRPSRAG-- 285
           P   Y K R + RD  P  G D+YG   +GGP R   +EGR +R+RA APY+RPSR+G  
Sbjct: 241 PPGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRSGGG 300

[Close]
BLAST of Lcy13g006260 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 266.5 bits (680), Expect = 2.4e-71
Identity = 161/299 (53.85%), Postives = 193/299 (64.55%), Query Frame = 0 

Query: 3   GREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMD 62
           G  E RIFVGGLSWD+TERQLE+ F R+GKI + QIM+ ++TGRPRGFGFITF+DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 63  DAIREMHGQEFGERIISVNKAEPKM-GEDIDHGYRGGGYSTGGRGNYGGGGGDRSARQDE 122
           DAI+ MHG+E G ++ISVNKAEPK+ GED+D   +GGGYS+ G+G            +DE
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT-----------EDE 127

Query: 123 CFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSD-RGDRFAGDN------------ 182
           CFKC R GHWARDCPS G  R R       RSR+GD D   DR+ GD             
Sbjct: 128 CFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRY-GDRDLEREREREREF 187

Query: 183 NRYVDDRYE-GGGRFGDRDRFDSSRDNKYGGRDRYVSDRYPPGGDRFGSSRYNNDSDRFP 242
           +RY+D R +  GGR+  RDRFDS   +KY  RD Y  +RY P GDRF S RY        
Sbjct: 188 DRYMDGRRDRDGGRYSYRDRFDSG--DKYEPRDHYPFERYAPPGDRFVSDRYGMPEHHLE 247

Query: 243 VNGYGKDRGYYRDGGPRGV-DKYGSGGPARDEGRSYRNRAAPYDRPSR-AGRPSSYDRY 285
               G++R Y RD   R   D+YG  GP RDEGR YR+R  PYDRPSR  GRPSSY+R+
Sbjct: 248 NEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]
BLAST of Lcy13g006260 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 266.5 bits (680), Expect = 2.4e-71
Identity = 161/299 (53.85%), Postives = 193/299 (64.55%), Query Frame = 0 

Query: 3   GREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGMD 62
           G  E RIFVGGLSWD+TERQLE+ F R+GKI + QIM+ ++TGRPRGFGFITF+DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 63  DAIREMHGQEFGERIISVNKAEPKM-GEDIDHGYRGGGYSTGGRGNYGGGGGDRSARQDE 122
           DAI+ MHG+E G ++ISVNKAEPK+ GED+D   +GGGYS+ G+G            +DE
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT-----------EDE 127

Query: 123 CFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSD-RGDRFAGDN------------ 182
           CFKC R GHWARDCPS G  R R       RSR+GD D   DR+ GD             
Sbjct: 128 CFKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRY-GDRDLEREREREREF 187

Query: 183 NRYVDDRYE-GGGRFGDRDRFDSSRDNKYGGRDRYVSDRYPPGGDRFGSSRYNNDSDRFP 242
           +RY+D R +  GGR+  RDRFDS   +KY  RD Y  +RY P GDRF S RY        
Sbjct: 188 DRYMDGRRDRDGGRYSYRDRFDSG--DKYEPRDHYPFERYAPPGDRFVSDRYGMPEHHLE 247

Query: 243 VNGYGKDRGYYRDGGPRGV-DKYGSGGPARDEGRSYRNRAAPYDRPSR-AGRPSSYDRY 285
               G++R Y RD   R   D+YG  GP RDEGR YR+R  PYDRPSR  GRPSSY+R+
Sbjct: 248 NEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]
BLAST of Lcy13g006260 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 141.7 bits (356), Expect = 8.8e-34
Identity = 107/292 (36.64%), Postives = 153/292 (52.40%), Query Frame = 0 

Query: 1   MAGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRG 60
           M+   EYR F+GGL+W  ++R L +AF ++G +++++++L+K +GR RGFGFITF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDDAIREMHGQEFGERIISVNKAEPKMG-----EDIDHGYRGGGYSTGGRGNYGGGGGDR 120
           MD+AI  M+G +   R I+V+KA+P  G      D D G   G      R + G GGGD 
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGD- 120

Query: 121 SARQDECFKCGRLGHWARDCPSVGGGRGRGGDSFLARSRLGDSDRGDRFAGDNNRYVDDR 180
                 CFKCG+ GH+AR+CPS                   +S R               
Sbjct: 121 ------CFKCGKPGHFARECPS-------------------ESSR--------------- 180

Query: 181 YEGGGRFGDRDRFDSSRDNKYGGRDRYVSDRYPPGGDRFGS--SRYNNDSDRFPVNGYGK 240
            +GGGRF  +D   SS+D++YG +D    DRY    DR+G+   RY++  DR+       
Sbjct: 181 -DGGGRFSSKDDRYSSKDDRYGAKD----DRYGAKEDRYGAKDDRYSSKDDRYSSK---D 240

Query: 241 DRGYYRDGGPR--GVDKYG--SGGPARDEGR-----SYRNRAAPYDRPSRAG 277
           DR   RDGG    G D+ G  +GG +RD G        R+  APYDRP   G
Sbjct: 241 DRYGSRDGGGSRYGPDRSGERAGGRSRDGGSRGAPGGERHSRAPYDRPRAGG 243

[Close]
BLAST of Lcy13g006260 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 112.1 bits (279), Expect = 7.5e-25
Identity = 71/158 (44.94%), Postives = 92/158 (58.23%), Query Frame = 0 

Query: 2   AGREEYRIFVGGLSWDITERQLENAFSRFGKIIDSQIMLEKNTGRPRGFGFITFSDRRGM 61
           +G  EYR FVGGL+W   +R LE AF+++G +IDS+I+ ++ TGR RGFGF+TF D + M
Sbjct: 3   SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62

Query: 62  DDAIREMHGQEFGERIISVNKAEPK-MGEDIDH------GYR---GGGYSTGGRGNYGGG 121
            DAI  M+GQ+   R I+VN+A+ +  G    H      GYR   GGGYS GG G+YGGG
Sbjct: 63  KDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYS-GGGGSYGGG 122

Query: 122 GGDRSARQDECFKCGRLGHWARDCPSVGGGRGRGGDSF 150
           GG R          G          S GGGR  GG  +
Sbjct: 123 GGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGY 159

The following BLAST results are available for this feature:
BLAST of Lcy13g006260 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8RWN51.3e-7756.41Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE... [more]
O227033.3e-7053.85Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE... [more]
Q9LIN31.2e-3236.64Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE... [more]
Q032501.1e-2344.94Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ... [more]
Q990701.8e-2342.68Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1[more]
BLAST of Lcy13g006260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BGN54.3e-15395.79glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo OX=3656 GN... [more]
A0A5D3CG304.3e-15395.79Glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucumis melo var. makuw... [more]
A0A6J1CFE71.3e-14489.37glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=... [more]
A0A6J1GY861.6e-14491.20glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita moschata OX=3... [more]
A0A6J1KMD72.1e-14490.85glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Cucurbita maxima OX=366... [more]
BLAST of Lcy13g006260 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038892830.12.3e-15395.47glycine-rich RNA-binding protein RZ1C-like isoform X1 [Benincasa hispida][more]
XP_008446829.18.9e-15395.79PREDICTED: glycine-rich RNA-binding protein RZ1C-like isoform X1 [Cucumis melo] ... [more]
KAE8648851.11.5e-15295.45hypothetical protein Csa_008374 [Cucumis sativus][more]
XP_004142412.11.5e-15295.45glycine-rich RNA-binding protein RZ1C isoform X1 [Cucumis sativus] >XP_011655869... [more]
XP_022139343.12.6e-14489.37glycine-rich RNA-binding protein RZ1C-like isoform X1 [Momordica charantia][more]
BLAST of Lcy13g006260 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G04280.19.0e-7956.41RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT1G60650.12.4e-7153.85RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT1G60650.22.4e-7153.85RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT3G26420.18.8e-3436.64RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
AT2G21660.17.5e-2544.94cold, circadian rhythm, and rna binding 2 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 121..137
e-value: 1.3E-5
score: 34.6
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 121..137
e-value: 2.3E-8
score: 33.8
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 122..137
score: 11.086722
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..81
e-value: 8.7E-29
score: 111.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..78
e-value: 1.9E-20
score: 72.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..85
score: 19.570105
NoneNo IPR availableGENE3D4.10.60.10coord: 118..145
e-value: 1.3E-8
score: 36.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..284
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..207
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..267
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..113
NoneNo IPR availablePANTHERPTHR15241TRANSFORMER-2-RELATEDcoord: 1..246
NoneNo IPR availablePANTHERPTHR15241:SF294GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKEcoord: 1..246
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..117
e-value: 3.0E-31
score: 110.4
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..115
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 113..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g006260.1Lcy13g006260.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding