Lcy13g006170 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g006170
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	NAC domain-containing protein 53-like
Location	Chr13: 5414821 .. 5416515 (-)
RNA-Seq Expression	Lcy13g006170
Synteny	Lcy13g006170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTGGAACCCATTACCCAATGTGCCTTCAGCCTTGGAATTTAGAGTATTTGTACATGATTTCTGTTTATTGAAGTGAGTCGTTATTGTTTGCTGCTTGATAAATTTTGTTCATTTTTTAATTAGTTGGTGGGAAATATCAAAATCTTGTTTAATTTTTTTCCCCAGAATGTTGATGAAGGAATTCTATCTGAAAGTGCTCCACCACCACCATTTGACTTTTATTATGGTGAGACCAGCAACTCTATTGAGCAATCTGACAATTTCATTGAAGATGATCAAAAGCCTGCAGTAGGCATATGTGAAACATCAGAGCTTCCTGATGGACAGAAGTTCTTTGTTTTACCAGACGAGTGTGGGTTACACGACAGATTGGTCAAACATGAGTATCTTGCTGAATCAAGCAATGATGCTGATGCTAATGCTGCTGATGAGGTCAATGCCAATGATGTGGATGATCGTTACGTATTGAACGAGACATTCTTTAGCACTTCTGACAATCTTTCTTTTAGTGATGAACTACTTTTGGAATCCAACGAGCTCTCAAACCCTACCGAAAGTGATCCTGCTGCTTTTGACGTGCTTGAAGAGTATCTTACATTCTTTGACGCAGATGGTGATAATGCAGATATGTCTTTCGATCCTTCTGAAATTCTCGGAAGTGAGAGTTCTGTTCCTGATCAAGCAGTTACTCCAGAGGTCAATATTGCTTCATTTCACAACTTATTCTTATTGTCTTGCGATGTGGAATTTACTTTTCACTGACGCATCATATTTCATTAGGTCGCTGGTGGTGTTACTGAACATGCATCTCCCAGCAAACATACTGCAGATTTACGTTATGACAATGAGGCCTCCTCCTCCTCTTCTATGCAAAGATCCGAGGATCCAAAAGCAGAACCAGGTGAGTTGAATCAGATGTTATTTTGTCCTTTCCATCTATATATTTCAAGATTTTTCGTTCATTCTTTCTTTTCTGGTACCAGATCTCAAGTACCCATTCCTCAAACATACAAGTCATGTGCTGGGCAGCATTCCTGCTCCATTTGCTTCACAGTTTACTTCAAAAGATGCTATGCATCTTAATTCAGCTCCACAAGCTTCAAGTTCTGTTCGTGTCACCGCAGGCATGATCGTCATAAGAAATACGTCACTAAATGGAGATGAAGTTAACAACTTGTATGGCAAGAATAATTCAGATCTCAACTTAATCTATTTATACGGGATCGTCGAAGGCGACATCAATTCCTCCCAGTTGTTGCCAACTGCTGGTGCACATTCCAGCAAGTCAGGATCTCTGATGTCTCGCTACTTCTTGTACTTCTTCATCTTGTTCTGGGTTCTAATCCTTTCAGTGAGTTTCAAAGTTGGAAGCTGCATCCATTCCAGGTGACCTAGTCGAGTCGAGTTTCGAAATGCAAAACCGAAGAAACATTGAAAATTTGTAGTAGTTAATTAGCTGGTAGTTTAGAAACTTTCTAGGCTACCAAATACAACACGTTGTTGCAGATCTATCTGCAGTCTTTATTCAAATATCAATAGAGTCTAGACTAACTGCCAACGAATTGGTGGCTAACTTTTTATCTCTTCCTTTTGTATTTTAATCTCAGAACTTTTTACAGTTGATAGCTGCAGGGCTTTGCTGTACTTACGAATTTATGAGAGTAAAGTTTGGAAACTTCTCATTCCATGA

mRNA sequence

ATGATGTGGAACCCATTACCCAATGTGCCTTCAGCCTTGGAATTTAGAGTCGCTGGTGGTGTTACTGAACATGCATCTCCCAGCAAACATACTGCAGATTTACGTTATGACAATGAGGCCTCCTCCTCCTCTTCTATGCAAAGATCCGAGGATCCAAAAGCAGAACCAGAACTTTTTACAGTTGATAGCTGCAGGGCTTTGCTGTACTTACGAATTTATGAGAGTAAAGTTTGGAAACTTCTCATTCCATGA

Coding sequence (CDS)

ATGATGTGGAACCCATTACCCAATGTGCCTTCAGCCTTGGAATTTAGAGTCGCTGGTGGTGTTACTGAACATGCATCTCCCAGCAAACATACTGCAGATTTACGTTATGACAATGAGGCCTCCTCCTCCTCTTCTATGCAAAGATCCGAGGATCCAAAAGCAGAACCAGAACTTTTTACAGTTGATAGCTGCAGGGCTTTGCTGTACTTACGAATTTATGAGAGTAAAGTTTGGAAACTTCTCATTCCATGA

Protein sequence

MMWNPLPNVPSALEFRVAGGVTEHASPSKHTADLRYDNEASSSSSMQRSEDPKAEPELFTVDSCRALLYLRIYESKVWKLLIP

Homology

[Close]

BLAST of Lcy13g006170 vs. ExPASy TrEMBL
Match: A0A6J1HXA7 (NAC domain-containing protein 53-like OS=Cucurbita maxima OX=3661 GN=LOC111467497 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.9e-10
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 17  VAGGVTEHASPSKHTADLRYDNEASSSSSMQRSEDPKAEPEL 59
           VAGG TEHASPSKHT+DLRYDNEASSSSSMQRS+DPK E +L
Sbjct: 387 VAGGATEHASPSKHTSDLRYDNEASSSSSMQRSKDPKPESDL 428

[Close]

BLAST of Lcy13g006170 vs. ExPASy TrEMBL
Match: A0A6J1G0Z1 (NAC domain-containing protein 53-like OS=Cucurbita moschata OX=3662 GN=LOC111449690 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 17  VAGGVTEHASPSKHTADLRYDNEASSSSSMQRSEDPKAEPEL 59
           V GG TEHASP+KHT+DLRYDNEASSSSSMQRSEDPK E +L
Sbjct: 387 VVGGATEHASPNKHTSDLRYDNEASSSSSMQRSEDPKPESDL 428

[Close]

BLAST of Lcy13g006170 vs. ExPASy TrEMBL
Match: A0A6J1CD11 (NAC domain-containing protein 53-like OS=Momordica charantia OX=3673 GN=LOC111010085 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.2e-08
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 4   NPLPNVPSALEFRVAGGVTEHASPSKHTADLRYDNEASSSSSMQRSEDPKAEPEL 59
           +P+P+   A+   VA G TEH S SKHTADLRYDNEASSSSS+QR ED KAEP++
Sbjct: 387 SPVPD--QAVLSEVAVGATEHVSASKHTADLRYDNEASSSSSVQRPEDQKAEPDI 439

[Close]

BLAST of Lcy13g006170 vs. ExPASy TrEMBL
Match: A0A5D3CDF5 (NAC domain-containing protein 53-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002320 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 4   NPLPNVPSALEFRVAGGVTEHASPSKHTADLRYDNEASSSSSMQRSEDPKAEPEL 59
           +P+P+     +  V GG TEHAS SK TADL +DNEA SSSSMQR EDPK+EP++
Sbjct: 380 SPIPD-----QTEVVGGATEHASTSKQTADLHHDNEA-SSSSMQRPEDPKSEPDI 428

[Close]

BLAST of Lcy13g006170 vs. ExPASy TrEMBL
Match: A0A1S3BGS5 (NAC domain-containing protein 53-like OS=Cucumis melo OX=3656 GN=LOC103489428 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 4   NPLPNVPSALEFRVAGGVTEHASPSKHTADLRYDNEASSSSSMQRSEDPKAEPEL 59
           +P+P+     +  V GG TEHAS SK TADL +DNEA SSSSMQR EDPK+EP++
Sbjct: 380 SPIPD-----QTEVVGGATEHASTSKQTADLHHDNEA-SSSSMQRPEDPKSEPDI 428

[Close]

BLAST of Lcy13g006170 vs. NCBI nr
Match: XP_022968188.1 (NAC domain-containing protein 53-like [Cucurbita maxima])

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-09
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 17  VAGGVTEHASPSKHTADLRYDNEASSSSSMQRSEDPKAEPEL 59
           VAGG TEHASPSKHT+DLRYDNEASSSSSMQRS+DPK E +L
Sbjct: 387 VAGGATEHASPSKHTSDLRYDNEASSSSSMQRSKDPKPESDL 428

[Close]

BLAST of Lcy13g006170 vs. NCBI nr
Match: KAG6573857.1 (NAC domain-containing protein 78, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012922.1 NAC domain-containing protein 78, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-09
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 17  VAGGVTEHASPSKHTADLRYDNEASSSSSMQRSEDPKAEPEL 59
           V GG TEHASP+KHT+DLRYDNEASSSSSMQRSEDPK E +L
Sbjct: 387 VVGGATEHASPNKHTSDLRYDNEASSSSSMQRSEDPKPESDL 428

[Close]

BLAST of Lcy13g006170 vs. NCBI nr
Match: XP_022945463.1 (NAC domain-containing protein 53-like [Cucurbita moschata])

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-09
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 17  VAGGVTEHASPSKHTADLRYDNEASSSSSMQRSEDPKAEPEL 59
           V GG TEHASP+KHT+DLRYDNEASSSSSMQRSEDPK E +L
Sbjct: 387 VVGGATEHASPNKHTSDLRYDNEASSSSSMQRSEDPKPESDL 428

[Close]

BLAST of Lcy13g006170 vs. NCBI nr
Match: XP_023541499.1 (NAC domain-containing protein 53-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-08
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 17  VAGGVTEHASPSKHTADLRYDNEASSSSSMQRSEDPKAEPEL 59
           V GG TE ASPSKHT+DLRYDNEASSSSSMQRSEDPK E +L
Sbjct: 387 VVGGATEQASPSKHTSDLRYDNEASSSSSMQRSEDPKPESDL 428

[Close]

BLAST of Lcy13g006170 vs. NCBI nr
Match: XP_038891998.1 (NAC domain-containing protein 53-like [Benincasa hispida])

HSP 1 Score: 67.4 bits (163), Expect = 6.6e-08
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 4   NPLPNVPSALEFRVAGGVTEHASPSKHTADLRYDNEASSSSSMQRSEDPKAEPEL 59
           +P+P+     +  VAGG TE+AS SKHTADLR+DNEASSSSSMQ+ EDPKAE ++
Sbjct: 380 SPVPD-----QAEVAGGATEYASASKHTADLRHDNEASSSSSMQKPEDPKAESDI 429

The following BLAST results are available for this feature:

BLAST of Lcy13g006170 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g006170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HXA7	5.9e-10	85.71	NAC domain-containing protein 53-like OS=Cucurbita maxima OX=3661 GN=LOC11146749...	[more]
A0A6J1G0Z1	1.3e-09	83.33	NAC domain-containing protein 53-like OS=Cucurbita moschata OX=3662 GN=LOC111449...	[more]
A0A6J1CD11	3.2e-08	65.45	NAC domain-containing protein 53-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A5D3CDF5	3.9e-06	60.00	NAC domain-containing protein 53-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BGS5	3.9e-06	60.00	NAC domain-containing protein 53-like OS=Cucumis melo OX=3656 GN=LOC103489428 PE...	[more]

BLAST of Lcy13g006170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022968188.1	1.2e-09	85.71	NAC domain-containing protein 53-like [Cucurbita maxima]	[more]
KAG6573857.1	2.7e-09	83.33	NAC domain-containing protein 78, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022945463.1	2.7e-09	83.33	NAC domain-containing protein 53-like [Cucurbita moschata]	[more]
XP_023541499.1	1.0e-08	83.33	NAC domain-containing protein 53-like [Cucurbita pepo subsp. pepo]	[more]
XP_038891998.1	6.6e-08	63.64	NAC domain-containing protein 53-like [Benincasa hispida]	[more]

BLAST of Lcy13g006170 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g006170.1	Lcy13g006170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding