Lcy13g006140 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g006140
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionglycine-rich cell wall structural protein 2-like
LocationChr13: 5388644 .. 5389441 (-)
RNA-Seq ExpressionLcy13g006140
SyntenyLcy13g006140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTCAAGTAATTAATAATCCTTTCTTTCTCACTTTTGCTTCCAATGCACTACAAGTTTACGTAAAACATTCCAATACTGTCTCTTGTTACATTAAATTCTGCGTCCAATTAGCTCTGTTTTTCTCTGCATTGTTGATTTTAATTGGCAATGGCGTGCGCCAGAGCGGTTGGTTTGGTGGTGTTGGTTTTGTTAATGGTGGACTTGACTCTTGCTGCTAGATTCTTGAGGGGGTACGGTGGCGGAGGTGGCAGTGGTGGTGGGGGCGGCGGCGGTGAAGGCTCGGGACCTTGGTCAGGTTCGGGATATGGTTCCGGGTATGGCTCGGGTTATGGGTCGGGATATGGCGATGAAGGGTATTCTAGATATGGAGATGAAGGATATGGGCCGTATGGGCCGTATGGGCCATATGGGAGTGGCGGAGGTGGAGGCGGAGGAGGTGGCGGTGGCGGCGGAGGTGGTAGTGCAAATGGAGCCGCGTATGGTCGTGGGTTTGGGTCGGGAAGTGGATCCGGGTATGGGTCGGGTGGTGGAGTCAGTCGTGGCGGAGGAGGTGGCGGCGGTGGTGGTAGAGGAGGCGGAGGAGGTGGAGGCTCGGGTATCGGAAGTGGGTCGGGGTATGGGTCGGGATATGGAAGTGGGGAAGGCTATGGGAGCGGAGGAGGTAGAGGTGGCGGTGGCGGTGGAGGAGGTGGTGGCGGTGGAGGTGGAATGGGTGGAGGATCCGGGTATGGTTCGGGATATGGGTCGGGTTATGGGTCCGGATATGGAGGAGGAGCGGATGAAGAATCGCCATGA

mRNA sequence

AAATTCAAGTAATTAATAATCCTTTCTTTCTCACTTTTGCTTCCAATGCACTACAAGTTTACGTAAAACATTCCAATACTGTCTCTTGTTACATTAAATTCTGCGTCCAATTAGCTCTGTTTTTCTCTGCATTGTTGATTTTAATTGGCAATGGCGTGCGCCAGAGCGGTTGGTTTGGTGGTGTTGGTTTTGTTAATGGTGGACTTGACTCTTGCTGCTAGATTCTTGAGGGGGTACGGTGGCGGAGGTGGCAGTGGTGGTGGGGGCGGCGGCGGTGAAGGCTCGGGACCTTGGTCAGGTTCGGGATATGGTTCCGGGTATGGCTCGGGTTATGGGTCGGGATATGGCGATGAAGGGTATTCTAGATATGGAGATGAAGGATATGGGCCGTATGGGCCGTATGGGCCATATGGGAGTGGCGGAGGTGGAGGCGGAGGAGGTGGCGGTGGCGGCGGAGGTGGTAGTGCAAATGGAGCCGCGTATGGTCGTGGGTTTGGGTCGGGAAGTGGATCCGGGTATGGGTCGGGTGGTGGAGTCAGTCGTGGCGGAGGAGGTGGCGGCGGTGGTGGTAGAGGAGGCGGAGGAGGTGGAGGCTCGGGTATCGGAAGTGGGTCGGGGTATGGGTCGGGATATGGAAGTGGGGAAGGCTATGGGAGCGGAGGAGGTAGAGGTGGCGGTGGCGGTGGAGGAGGTGGTGGCGGTGGAGGTGGAATGGGTGGAGGATCCGGGTATGGTTCGGGATATGGGTCGGGTTATGGGTCCGGATATGGAGGAGGAGCGGATGAAGAATCGCCATGA

Coding sequence (CDS)

ATGGCGTGCGCCAGAGCGGTTGGTTTGGTGGTGTTGGTTTTGTTAATGGTGGACTTGACTCTTGCTGCTAGATTCTTGAGGGGGTACGGTGGCGGAGGTGGCAGTGGTGGTGGGGGCGGCGGCGGTGAAGGCTCGGGACCTTGGTCAGGTTCGGGATATGGTTCCGGGTATGGCTCGGGTTATGGGTCGGGATATGGCGATGAAGGGTATTCTAGATATGGAGATGAAGGATATGGGCCGTATGGGCCGTATGGGCCATATGGGAGTGGCGGAGGTGGAGGCGGAGGAGGTGGCGGTGGCGGCGGAGGTGGTAGTGCAAATGGAGCCGCGTATGGTCGTGGGTTTGGGTCGGGAAGTGGATCCGGGTATGGGTCGGGTGGTGGAGTCAGTCGTGGCGGAGGAGGTGGCGGCGGTGGTGGTAGAGGAGGCGGAGGAGGTGGAGGCTCGGGTATCGGAAGTGGGTCGGGGTATGGGTCGGGATATGGAAGTGGGGAAGGCTATGGGAGCGGAGGAGGTAGAGGTGGCGGTGGCGGTGGAGGAGGTGGTGGCGGTGGAGGTGGAATGGGTGGAGGATCCGGGTATGGTTCGGGATATGGGTCGGGTTATGGGTCCGGATATGGAGGAGGAGCGGATGAAGAATCGCCATGA

Protein sequence

MACARAVGLVVLVLLMVDLTLAARFLRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSGYGSGYGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSGSGSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGGGGGGGGGGGMGGGSGYGSGYGSGYGSGYGGGADEESP
Homology
BLAST of Lcy13g006140 vs. ExPASy Swiss-Prot
Match: P0C5C7 (Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=GRP0.9 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-04
Identity = 122/207 (58.94%), Postives = 132/207 (63.77%), Query Frame = 0

Query: 1   MACARAVGLVVLVLLMVDLTLAARFLRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSG 60
           MA  + + L +LVLL + +T +AR L GYG GGG GGGGGG  G G + GSGYGS  GSG
Sbjct: 1   MATTKHLALAILVLLSIGMTTSARTLLGYGPGGGGGGGGGGEGGGGGYGGSGYGS--GSG 60

Query: 61  YGSGYGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSGSG 120
           YG G G  G +             G YG GGGGGGGGG GGG GS        G+GSG G
Sbjct: 61  YGEGGGSGGAAG------------GGYGRGGGGGGGGGEGGGSGS--------GYGSGQG 120

Query: 121 SGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGGGG 180
           SGYG+G G   GG G GGGG GG GGG  G G GSGYGSGYGSG G   GGG G GGGGG
Sbjct: 121 SGYGAGVG-GAGGYGSGGGGGGGQGGGAGGYGQGSGYGSGYGSGAGGAHGGGYGSGGGGG 180

Query: 181 GGGGGGGMGGGSGYGSGYGSGYGSGYG 208
           GGGG GG G GSG GSGYGSG G G G
Sbjct: 181 GGGGQGG-GSGSGSGSGYGSGSGGGNG 183

BLAST of Lcy13g006140 vs. ExPASy Swiss-Prot
Match: A3C5A7 (Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRP0.9 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-04
Identity = 122/207 (58.94%), Postives = 132/207 (63.77%), Query Frame = 0

Query: 1   MACARAVGLVVLVLLMVDLTLAARFLRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSG 60
           MA  + + L +LVLL + +T +AR L GYG GGG GGGGGG  G G + GSGYGS  GSG
Sbjct: 1   MATTKHLALAILVLLSIGMTTSARTLLGYGPGGGGGGGGGGEGGGGGYGGSGYGS--GSG 60

Query: 61  YGSGYGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSGSG 120
           YG G G  G +             G YG GGGGGGGGG GGG GS        G+GSG G
Sbjct: 61  YGEGGGSGGAAG------------GGYGRGGGGGGGGGEGGGSGS--------GYGSGQG 120

Query: 121 SGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGGGG 180
           SGYG+G G   GG G GGGG GG GGG  G G GSGYGSGYGSG G   GGG G GGGGG
Sbjct: 121 SGYGAGVG-GAGGYGSGGGGGGGQGGGAGGYGQGSGYGSGYGSGAGGAHGGGYGSGGGGG 180

Query: 181 GGGGGGGMGGGSGYGSGYGSGYGSGYG 208
           GGGG GG G GSG GSGYGSG G G G
Sbjct: 181 GGGGQGG-GSGSGSGSGYGSGSGGGNG 183

BLAST of Lcy13g006140 vs. ExPASy TrEMBL
Match: A0A6J1JQB8 (putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111487374 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 5.7e-49
Identity = 188/214 (87.85%), Postives = 191/214 (89.25%), Query Frame = 0

Query: 1   MACARAVGLVVLVLLMVDLTLAARFLRGY--GGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
           MA   A+GLV+LVLLM DLTLAARFLRGY  GGGGGSGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1   MATNGAIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60

Query: 61  SGYGSGYGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSG 120
           SGYGSGYGD GY RYGDEG      YGPYGSGGGGGGGGGGGGGGGSANGA YG+GFGSG
Sbjct: 61  SGYGSGYGDGGYPRYGDEG------YGPYGSGGGGGGGGGGGGGGGSANGAGYGQGFGSG 120

Query: 121 SGSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGG 180
           SGSGYGSGGGV RGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSG GYGSGGGRGGGGG
Sbjct: 121 SGSGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGG 180

Query: 181 GGGGGGGGGMGG-GSGYGSGYGSGYGSGYGGGAD 212
           GGGGGGGGG GG G G GSGYGSGYGSGYGGG D
Sbjct: 181 GGGGGGGGGGGGEGMGGGSGYGSGYGSGYGGGGD 208

BLAST of Lcy13g006140 vs. ExPASy TrEMBL
Match: A0A0A0KUV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622440 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.0e-46
Identity = 183/216 (84.72%), Postives = 188/216 (87.04%), Query Frame = 0

Query: 1   MACARAVGLVVLVLLMVDLTLAARFLRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSG 60
           MA  +A GLV+LVLLM+DL LAARF RGY  GGGSGGGGGGGEGSGPWSGSGYGSGYGSG
Sbjct: 1   MATTKAAGLVILVLLMLDLALAARFFRGY--GGGSGGGGGGGEGSGPWSGSGYGSGYGSG 60

Query: 61  YGSGY-GDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSGS 120
           YGSGY G+EGYSRYGDE  G YGPYGPY SGGGGGGGGGGGGGGGSA GA YGRGFG+GS
Sbjct: 61  YGSGYGGEEGYSRYGDE--GRYGPYGPY-SGGGGGGGGGGGGGGGSAIGAEYGRGFGAGS 120

Query: 121 GSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGGG 180
           GSGYGSGGGV RGGGGGGG   GGGGGGGSGIGSGSGYGSGYGSG GYGSGGGRGGGGGG
Sbjct: 121 GSGYGSGGGVGRGGGGGGGS--GGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGG 180

Query: 181 GGGGGGGGMGGGSGYGSGYGSGYGSGYGGGADEESP 216
           GGGGGGG        GSGYGSGYGSGYGGG DEESP
Sbjct: 181 GGGGGGG--------GSGYGSGYGSGYGGGGDEESP 201

BLAST of Lcy13g006140 vs. ExPASy TrEMBL
Match: A0A1S3BGF1 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489565 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 187/220 (85.00%), Postives = 191/220 (86.82%), Query Frame = 0

Query: 1   MACARAVGLVVLVLLMVDLTLAARFLRGY--GGGGGSGGGGGGGEGS-GPWSGSGYGSGY 60
           MA  +AVG VVLVLLM+DL LAARF RGY  GGGGGSGGGGGGGEGS GPW GSGYGSGY
Sbjct: 1   MATTKAVGFVVLVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGGPWPGSGYGSGY 60

Query: 61  GSGYGSGY-GDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFG 120
           GSGYGSGY G+EGYSRYGDEGYGPYG Y    SGGGGGGGGGGGGGGGSA GA YGRGFG
Sbjct: 61  GSGYGSGYGGEEGYSRYGDEGYGPYGRY----SGGGGGGGGGGGGGGGSAIGAEYGRGFG 120

Query: 121 SGSGSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGG 180
            G GSGYGSGGGV RGGGGGGG   GGGGGGGSG+GSGSGYGSGYGSG GYGSGGGRGGG
Sbjct: 121 MGGGSGYGSGGGVGRGGGGGGGS--GGGGGGGSGVGSGSGYGSGYGSGGGYGSGGGRGGG 180

Query: 181 GG-GGGGGGGGGMGGGSGYGSGYGSGYGSGYGGGADEESP 216
           GG GGGGGGGGG GGG G GSGYGSGYGSGYGGG DEESP
Sbjct: 181 GGVGGGGGGGGGGGGGMGGGSGYGSGYGSGYGGGGDEESP 214

BLAST of Lcy13g006140 vs. ExPASy TrEMBL
Match: A0A6J1CF67 (putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111010186 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 9.8e-33
Identity = 148/177 (83.62%), Postives = 153/177 (86.44%), Query Frame = 0

Query: 5   RAVGLVVLVLLMVDLTLAARFLRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSGYGSG 64
           RA+GLVVLVLLMVDLTLAAR LRGY  GGG+GGGGGGGEG GP SGSGYGSGYGSGYGSG
Sbjct: 7   RAIGLVVLVLLMVDLTLAARSLRGY--GGGTGGGGGGGEGFGP-SGSGYGSGYGSGYGSG 66

Query: 65  YGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSGSGSGYG 124
           +GDE Y     E Y PYGPYGPYGSGGGGGGGGGGGGGGG A GA YGRGF    GSGYG
Sbjct: 67  FGDEAY-----EPYEPYGPYGPYGSGGGGGGGGGGGGGGG-ATGAGYGRGF----GSGYG 126

Query: 125 SGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGGGGG 182
           SGGG+ RGGGGGGGGGRGGGGGGGSG GSGSGYGSGYGSG GYG+G GRGGGGGGGG
Sbjct: 127 SGGGIGRGGGGGGGGGRGGGGGGGSGTGSGSGYGSGYGSGGGYGNGRGRGGGGGGGG 170

BLAST of Lcy13g006140 vs. ExPASy TrEMBL
Match: A0A1U7V8I6 (putative glycine-rich cell wall structural protein 1 OS=Nicotiana sylvestris OX=4096 GN=LOC104216127 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.3e-20
Identity = 147/214 (68.69%), Postives = 158/214 (73.83%), Query Frame = 0

Query: 1   MACARAVGLVVLVLLMVDLTLAARF--LRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
           M  ++ +G  +L+LL VDL  AARF   RG GGGGG GGGGGGG GS   +GSGYGSGYG
Sbjct: 1   MGYSKIIGAALLILLFVDLAFAARFYGARG-GGGGGGGGGGGGGGGSALGAGSGYGSGYG 60

Query: 61  SGYGSGYGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSG 120
           SG GSGYG+                 G +GSGGGGGGGGGGGGGGG   GA  GRG GSG
Sbjct: 61  SGEGSGYGEAD---------------GVFGSGGGGGGGGGGGGGGG--GGANSGRGSGSG 120

Query: 121 SGSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGG 180
            GSGYGSGGG+ RGGGGGGGGG+GGGGGGGS  G+GSGYGSG GSG GYGSGGGRGGGGG
Sbjct: 121 YGSGYGSGGGIGRGGGGGGGGGQGGGGGGGSSSGNGSGYGSGSGSGSGYGSGGGRGGGGG 180

Query: 181 GGGGGGGGGMGGGSGYGSGYGSGYGSGYGGGADE 213
           GGGGGGGGG GG SG GSGYGSG G G G G DE
Sbjct: 181 GGGGGGGGGGGGSSGNGSGYGSGSGYGSGSGGDE 196

BLAST of Lcy13g006140 vs. NCBI nr
Match: XP_023550088.1 (glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 1.9e-51
Identity = 190/213 (89.20%), Postives = 193/213 (90.61%), Query Frame = 0

Query: 1   MACARAVGLVVLVLLMVDLTLAARFLRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSG 60
           MA   A+GLV+LVLLM DLTLAARFLRGY  GGGSGGGGGGGEGS PWSGSGYGSGYGSG
Sbjct: 1   MATTGAIGLVLLVLLMADLTLAARFLRGY--GGGSGGGGGGGEGSRPWSGSGYGSGYGSG 60

Query: 61  YGSGYGDEGYSRYGDEGYGPYGPYGPYGS-GGGGGGGGGGGGGGGSANGAAYGRGFGSGS 120
           YGSGYGD GY RYGDEGYGPYGPYGPYGS GGGGGGGGGGGGGGG ANGA YG GFGSGS
Sbjct: 61  YGSGYGDGGYPRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGGGANGAGYGHGFGSGS 120

Query: 121 GSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGGG 180
           GSGYGSGGGV RGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSG GYG+GGGRGGGGGG
Sbjct: 121 GSGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGNGGGRGGGGGG 180

Query: 181 GGGGGGGGMGG-GSGYGSGYGSGYGSGYGGGAD 212
           GGGGGGGG GG G G GSGYGSGYGSGYGGG D
Sbjct: 181 GGGGGGGGGGGEGMGGGSGYGSGYGSGYGGGGD 211

BLAST of Lcy13g006140 vs. NCBI nr
Match: KAG6601193.1 (hypothetical protein SDJN03_06426, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.5 bits (524), Expect = 2.4e-49
Identity = 187/214 (87.38%), Postives = 190/214 (88.79%), Query Frame = 0

Query: 1   MACARAVGLVVLVLLMVDLTLAARFLRGY--GGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
           MA    +GLV+LVLLM DLTLAARFLRGY  GGGGGSGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1   MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60

Query: 61  SGYGSGYGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSG 120
           SGYGSGYGD GY RYGDE    YGPYGPYGSGGGGGGGGGGGGGGG ANGA YG GFGSG
Sbjct: 61  SGYGSGYGDGGYPRYGDE---EYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSG 120

Query: 121 SGSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGG 180
           SGSGYGSGGGV RGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSG GYG+GGGRGGGGG
Sbjct: 121 SGSGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGNGGGRGGGGG 180

Query: 181 GGGGGGGGGMGG-GSGYGSGYGSGYGSGYGGGAD 212
           GGGGGGGGG GG G G GSGYGSGYGSGYGGG D
Sbjct: 181 GGGGGGGGGGGGEGMGGGSGYGSGYGSGYGGGGD 211

BLAST of Lcy13g006140 vs. NCBI nr
Match: XP_022990525.1 (putative glycine-rich cell wall structural protein 1 [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-48
Identity = 188/214 (87.85%), Postives = 191/214 (89.25%), Query Frame = 0

Query: 1   MACARAVGLVVLVLLMVDLTLAARFLRGY--GGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
           MA   A+GLV+LVLLM DLTLAARFLRGY  GGGGGSGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1   MATNGAIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60

Query: 61  SGYGSGYGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSG 120
           SGYGSGYGD GY RYGDEG      YGPYGSGGGGGGGGGGGGGGGSANGA YG+GFGSG
Sbjct: 61  SGYGSGYGDGGYPRYGDEG------YGPYGSGGGGGGGGGGGGGGGSANGAGYGQGFGSG 120

Query: 121 SGSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGG 180
           SGSGYGSGGGV RGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSG GYGSGGGRGGGGG
Sbjct: 121 SGSGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGG 180

Query: 181 GGGGGGGGGMGG-GSGYGSGYGSGYGSGYGGGAD 212
           GGGGGGGGG GG G G GSGYGSGYGSGYGGG D
Sbjct: 181 GGGGGGGGGGGGEGMGGGSGYGSGYGSGYGGGGD 208

BLAST of Lcy13g006140 vs. NCBI nr
Match: XP_031741764.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 3.2e-46
Identity = 184/216 (85.19%), Postives = 189/216 (87.50%), Query Frame = 0

Query: 1   MACARAVGLVVLVLLMVDLTLAARFLRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSG 60
           MA  +A GLV+LVLLM+DL LAARF RGY  GGGSGGGGGGGEGSGPWSGSGYGSGYGSG
Sbjct: 1   MATTKAAGLVILVLLMLDLALAARFFRGY--GGGSGGGGGGGEGSGPWSGSGYGSGYGSG 60

Query: 61  YGSGY-GDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSGS 120
           YGSGY G+EGYSRYGDE  G YGPYGPY SGGGGGGGGGGGGGGGSA GA YGRGFG+GS
Sbjct: 61  YGSGYGGEEGYSRYGDE--GRYGPYGPY-SGGGGGGGGGGGGGGGSAIGAEYGRGFGAGS 120

Query: 121 GSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGGG 180
           GSGYGSGGGV RGGGGGGG   GGGGGGGSGIGSGSGYGSGYGSG GYGSGGGRGGGGGG
Sbjct: 121 GSGYGSGGGVGRGGGGGGGS--GGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGG 180

Query: 181 GGGGGGGGMGGGSGYGSGYGSGYGSGYGGGADEESP 216
           GGGGGGG      G GSGYGSGYGSGYGGG DEESP
Sbjct: 181 GGGGGGG------GGGSGYGSGYGSGYGGGGDEESP 203

BLAST of Lcy13g006140 vs. NCBI nr
Match: XP_008447018.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 2.1e-45
Identity = 187/220 (85.00%), Postives = 191/220 (86.82%), Query Frame = 0

Query: 1   MACARAVGLVVLVLLMVDLTLAARFLRGY--GGGGGSGGGGGGGEGS-GPWSGSGYGSGY 60
           MA  +AVG VVLVLLM+DL LAARF RGY  GGGGGSGGGGGGGEGS GPW GSGYGSGY
Sbjct: 1   MATTKAVGFVVLVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGGPWPGSGYGSGY 60

Query: 61  GSGYGSGY-GDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFG 120
           GSGYGSGY G+EGYSRYGDEGYGPYG Y    SGGGGGGGGGGGGGGGSA GA YGRGFG
Sbjct: 61  GSGYGSGYGGEEGYSRYGDEGYGPYGRY----SGGGGGGGGGGGGGGGSAIGAEYGRGFG 120

Query: 121 SGSGSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGG 180
            G GSGYGSGGGV RGGGGGGG   GGGGGGGSG+GSGSGYGSGYGSG GYGSGGGRGGG
Sbjct: 121 MGGGSGYGSGGGVGRGGGGGGGS--GGGGGGGSGVGSGSGYGSGYGSGGGYGSGGGRGGG 180

Query: 181 GG-GGGGGGGGGMGGGSGYGSGYGSGYGSGYGGGADEESP 216
           GG GGGGGGGGG GGG G GSGYGSGYGSGYGGG DEESP
Sbjct: 181 GGVGGGGGGGGGGGGGMGGGSGYGSGYGSGYGGGGDEESP 214

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P0C5C71.4e-0458.94Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. indica OX=399... [more]
A3C5A71.4e-0458.94Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. japonica OX=3... [more]
Match NameE-valueIdentityDescription
A0A6J1JQB85.7e-4987.85putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661... [more]
A0A0A0KUV72.0e-4684.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622440 PE=4 SV=1[more]
A0A1S3BGF11.0e-4585.00glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1CF679.8e-3383.62putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3... [more]
A0A1U7V8I67.3e-2068.69putative glycine-rich cell wall structural protein 1 OS=Nicotiana sylvestris OX=... [more]
Match NameE-valueIdentityDescription
XP_023550088.11.9e-5189.20glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo][more]
KAG6601193.12.4e-4987.38hypothetical protein SDJN03_06426, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022990525.11.2e-4887.85putative glycine-rich cell wall structural protein 1 [Cucurbita maxima][more]
XP_031741764.13.2e-4685.19glycine-rich cell wall structural protein 2 [Cucumis sativus][more]
XP_008447018.12.1e-4585.00PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 90..105
score: 60.16
coord: 143..161
score: 47.37
coord: 116..126
score: 29.55
coord: 31..42
score: 42.71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..186
NoneNo IPR availablePANTHERPTHR37612:SF6FIBROIN HEAVY CHAIN FIB-H LIKE PROTEINcoord: 1..211
NoneNo IPR availablePANTHERPTHR37612FIBROIN HEAVY CHAIN FIB-H LIKE PROTEINcoord: 1..211

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g006140.1Lcy13g006140.1mRNA