Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTCAAGTAATTAATAATCCTTTCTTTCTCACTTTTGCTTCCAATGCACTACAAGTTTACGTAAAACATTCCAATACTGTCTCTTGTTACATTAAATTCTGCGTCCAATTAGCTCTGTTTTTCTCTGCATTGTTGATTTTAATTGGCAATGGCGTGCGCCAGAGCGGTTGGTTTGGTGGTGTTGGTTTTGTTAATGGTGGACTTGACTCTTGCTGCTAGATTCTTGAGGGGGTACGGTGGCGGAGGTGGCAGTGGTGGTGGGGGCGGCGGCGGTGAAGGCTCGGGACCTTGGTCAGGTTCGGGATATGGTTCCGGGTATGGCTCGGGTTATGGGTCGGGATATGGCGATGAAGGGTATTCTAGATATGGAGATGAAGGATATGGGCCGTATGGGCCGTATGGGCCATATGGGAGTGGCGGAGGTGGAGGCGGAGGAGGTGGCGGTGGCGGCGGAGGTGGTAGTGCAAATGGAGCCGCGTATGGTCGTGGGTTTGGGTCGGGAAGTGGATCCGGGTATGGGTCGGGTGGTGGAGTCAGTCGTGGCGGAGGAGGTGGCGGCGGTGGTGGTAGAGGAGGCGGAGGAGGTGGAGGCTCGGGTATCGGAAGTGGGTCGGGGTATGGGTCGGGATATGGAAGTGGGGAAGGCTATGGGAGCGGAGGAGGTAGAGGTGGCGGTGGCGGTGGAGGAGGTGGTGGCGGTGGAGGTGGAATGGGTGGAGGATCCGGGTATGGTTCGGGATATGGGTCGGGTTATGGGTCCGGATATGGAGGAGGAGCGGATGAAGAATCGCCATGA
mRNA sequence
AAATTCAAGTAATTAATAATCCTTTCTTTCTCACTTTTGCTTCCAATGCACTACAAGTTTACGTAAAACATTCCAATACTGTCTCTTGTTACATTAAATTCTGCGTCCAATTAGCTCTGTTTTTCTCTGCATTGTTGATTTTAATTGGCAATGGCGTGCGCCAGAGCGGTTGGTTTGGTGGTGTTGGTTTTGTTAATGGTGGACTTGACTCTTGCTGCTAGATTCTTGAGGGGGTACGGTGGCGGAGGTGGCAGTGGTGGTGGGGGCGGCGGCGGTGAAGGCTCGGGACCTTGGTCAGGTTCGGGATATGGTTCCGGGTATGGCTCGGGTTATGGGTCGGGATATGGCGATGAAGGGTATTCTAGATATGGAGATGAAGGATATGGGCCGTATGGGCCGTATGGGCCATATGGGAGTGGCGGAGGTGGAGGCGGAGGAGGTGGCGGTGGCGGCGGAGGTGGTAGTGCAAATGGAGCCGCGTATGGTCGTGGGTTTGGGTCGGGAAGTGGATCCGGGTATGGGTCGGGTGGTGGAGTCAGTCGTGGCGGAGGAGGTGGCGGCGGTGGTGGTAGAGGAGGCGGAGGAGGTGGAGGCTCGGGTATCGGAAGTGGGTCGGGGTATGGGTCGGGATATGGAAGTGGGGAAGGCTATGGGAGCGGAGGAGGTAGAGGTGGCGGTGGCGGTGGAGGAGGTGGTGGCGGTGGAGGTGGAATGGGTGGAGGATCCGGGTATGGTTCGGGATATGGGTCGGGTTATGGGTCCGGATATGGAGGAGGAGCGGATGAAGAATCGCCATGA
Coding sequence (CDS)
ATGGCGTGCGCCAGAGCGGTTGGTTTGGTGGTGTTGGTTTTGTTAATGGTGGACTTGACTCTTGCTGCTAGATTCTTGAGGGGGTACGGTGGCGGAGGTGGCAGTGGTGGTGGGGGCGGCGGCGGTGAAGGCTCGGGACCTTGGTCAGGTTCGGGATATGGTTCCGGGTATGGCTCGGGTTATGGGTCGGGATATGGCGATGAAGGGTATTCTAGATATGGAGATGAAGGATATGGGCCGTATGGGCCGTATGGGCCATATGGGAGTGGCGGAGGTGGAGGCGGAGGAGGTGGCGGTGGCGGCGGAGGTGGTAGTGCAAATGGAGCCGCGTATGGTCGTGGGTTTGGGTCGGGAAGTGGATCCGGGTATGGGTCGGGTGGTGGAGTCAGTCGTGGCGGAGGAGGTGGCGGCGGTGGTGGTAGAGGAGGCGGAGGAGGTGGAGGCTCGGGTATCGGAAGTGGGTCGGGGTATGGGTCGGGATATGGAAGTGGGGAAGGCTATGGGAGCGGAGGAGGTAGAGGTGGCGGTGGCGGTGGAGGAGGTGGTGGCGGTGGAGGTGGAATGGGTGGAGGATCCGGGTATGGTTCGGGATATGGGTCGGGTTATGGGTCCGGATATGGAGGAGGAGCGGATGAAGAATCGCCATGA
Protein sequence
MACARAVGLVVLVLLMVDLTLAARFLRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSGYGSGYGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSGSGSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGGGGGGGGGGGMGGGSGYGSGYGSGYGSGYGGGADEESP
Homology
BLAST of Lcy13g006140 vs. ExPASy Swiss-Prot
Match:
P0C5C7 (Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=GRP0.9 PE=2 SV=1)
HSP 1 Score: 48.1 bits (113), Expect = 1.4e-04
Identity = 122/207 (58.94%), Postives = 132/207 (63.77%), Query Frame = 0
Query: 1 MACARAVGLVVLVLLMVDLTLAARFLRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSG 60
MA + + L +LVLL + +T +AR L GYG GGG GGGGGG G G + GSGYGS GSG
Sbjct: 1 MATTKHLALAILVLLSIGMTTSARTLLGYGPGGGGGGGGGGEGGGGGYGGSGYGS--GSG 60
Query: 61 YGSGYGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSGSG 120
YG G G G + G YG GGGGGGGGG GGG GS G+GSG G
Sbjct: 61 YGEGGGSGGAAG------------GGYGRGGGGGGGGGEGGGSGS--------GYGSGQG 120
Query: 121 SGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGGGG 180
SGYG+G G GG G GGGG GG GGG G G GSGYGSGYGSG G GGG G GGGGG
Sbjct: 121 SGYGAGVG-GAGGYGSGGGGGGGQGGGAGGYGQGSGYGSGYGSGAGGAHGGGYGSGGGGG 180
Query: 181 GGGGGGGMGGGSGYGSGYGSGYGSGYG 208
GGGG GG G GSG GSGYGSG G G G
Sbjct: 181 GGGGQGG-GSGSGSGSGYGSGSGGGNG 183
BLAST of Lcy13g006140 vs. ExPASy Swiss-Prot
Match:
A3C5A7 (Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRP0.9 PE=2 SV=1)
HSP 1 Score: 48.1 bits (113), Expect = 1.4e-04
Identity = 122/207 (58.94%), Postives = 132/207 (63.77%), Query Frame = 0
Query: 1 MACARAVGLVVLVLLMVDLTLAARFLRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSG 60
MA + + L +LVLL + +T +AR L GYG GGG GGGGGG G G + GSGYGS GSG
Sbjct: 1 MATTKHLALAILVLLSIGMTTSARTLLGYGPGGGGGGGGGGEGGGGGYGGSGYGS--GSG 60
Query: 61 YGSGYGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSGSG 120
YG G G G + G YG GGGGGGGGG GGG GS G+GSG G
Sbjct: 61 YGEGGGSGGAAG------------GGYGRGGGGGGGGGEGGGSGS--------GYGSGQG 120
Query: 121 SGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGGGG 180
SGYG+G G GG G GGGG GG GGG G G GSGYGSGYGSG G GGG G GGGGG
Sbjct: 121 SGYGAGVG-GAGGYGSGGGGGGGQGGGAGGYGQGSGYGSGYGSGAGGAHGGGYGSGGGGG 180
Query: 181 GGGGGGGMGGGSGYGSGYGSGYGSGYG 208
GGGG GG G GSG GSGYGSG G G G
Sbjct: 181 GGGGQGG-GSGSGSGSGYGSGSGGGNG 183
BLAST of Lcy13g006140 vs. ExPASy TrEMBL
Match:
A0A6J1JQB8 (putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111487374 PE=4 SV=1)
HSP 1 Score: 204.1 bits (518), Expect = 5.7e-49
Identity = 188/214 (87.85%), Postives = 191/214 (89.25%), Query Frame = 0
Query: 1 MACARAVGLVVLVLLMVDLTLAARFLRGY--GGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
MA A+GLV+LVLLM DLTLAARFLRGY GGGGGSGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1 MATNGAIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
Query: 61 SGYGSGYGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSG 120
SGYGSGYGD GY RYGDEG YGPYGSGGGGGGGGGGGGGGGSANGA YG+GFGSG
Sbjct: 61 SGYGSGYGDGGYPRYGDEG------YGPYGSGGGGGGGGGGGGGGGSANGAGYGQGFGSG 120
Query: 121 SGSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGG 180
SGSGYGSGGGV RGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSG GYGSGGGRGGGGG
Sbjct: 121 SGSGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGG 180
Query: 181 GGGGGGGGGMGG-GSGYGSGYGSGYGSGYGGGAD 212
GGGGGGGGG GG G G GSGYGSGYGSGYGGG D
Sbjct: 181 GGGGGGGGGGGGEGMGGGSGYGSGYGSGYGGGGD 208
BLAST of Lcy13g006140 vs. ExPASy TrEMBL
Match:
A0A0A0KUV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622440 PE=4 SV=1)
HSP 1 Score: 195.7 bits (496), Expect = 2.0e-46
Identity = 183/216 (84.72%), Postives = 188/216 (87.04%), Query Frame = 0
Query: 1 MACARAVGLVVLVLLMVDLTLAARFLRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSG 60
MA +A GLV+LVLLM+DL LAARF RGY GGGSGGGGGGGEGSGPWSGSGYGSGYGSG
Sbjct: 1 MATTKAAGLVILVLLMLDLALAARFFRGY--GGGSGGGGGGGEGSGPWSGSGYGSGYGSG 60
Query: 61 YGSGY-GDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSGS 120
YGSGY G+EGYSRYGDE G YGPYGPY SGGGGGGGGGGGGGGGSA GA YGRGFG+GS
Sbjct: 61 YGSGYGGEEGYSRYGDE--GRYGPYGPY-SGGGGGGGGGGGGGGGSAIGAEYGRGFGAGS 120
Query: 121 GSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGGG 180
GSGYGSGGGV RGGGGGGG GGGGGGGSGIGSGSGYGSGYGSG GYGSGGGRGGGGGG
Sbjct: 121 GSGYGSGGGVGRGGGGGGGS--GGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGG 180
Query: 181 GGGGGGGGMGGGSGYGSGYGSGYGSGYGGGADEESP 216
GGGGGGG GSGYGSGYGSGYGGG DEESP
Sbjct: 181 GGGGGGG--------GSGYGSGYGSGYGGGGDEESP 201
BLAST of Lcy13g006140 vs. ExPASy TrEMBL
Match:
A0A1S3BGF1 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489565 PE=4 SV=1)
HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 187/220 (85.00%), Postives = 191/220 (86.82%), Query Frame = 0
Query: 1 MACARAVGLVVLVLLMVDLTLAARFLRGY--GGGGGSGGGGGGGEGS-GPWSGSGYGSGY 60
MA +AVG VVLVLLM+DL LAARF RGY GGGGGSGGGGGGGEGS GPW GSGYGSGY
Sbjct: 1 MATTKAVGFVVLVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGGPWPGSGYGSGY 60
Query: 61 GSGYGSGY-GDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFG 120
GSGYGSGY G+EGYSRYGDEGYGPYG Y SGGGGGGGGGGGGGGGSA GA YGRGFG
Sbjct: 61 GSGYGSGYGGEEGYSRYGDEGYGPYGRY----SGGGGGGGGGGGGGGGSAIGAEYGRGFG 120
Query: 121 SGSGSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGG 180
G GSGYGSGGGV RGGGGGGG GGGGGGGSG+GSGSGYGSGYGSG GYGSGGGRGGG
Sbjct: 121 MGGGSGYGSGGGVGRGGGGGGGS--GGGGGGGSGVGSGSGYGSGYGSGGGYGSGGGRGGG 180
Query: 181 GG-GGGGGGGGGMGGGSGYGSGYGSGYGSGYGGGADEESP 216
GG GGGGGGGGG GGG G GSGYGSGYGSGYGGG DEESP
Sbjct: 181 GGVGGGGGGGGGGGGGMGGGSGYGSGYGSGYGGGGDEESP 214
BLAST of Lcy13g006140 vs. ExPASy TrEMBL
Match:
A0A6J1CF67 (putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111010186 PE=4 SV=1)
HSP 1 Score: 150.2 bits (378), Expect = 9.8e-33
Identity = 148/177 (83.62%), Postives = 153/177 (86.44%), Query Frame = 0
Query: 5 RAVGLVVLVLLMVDLTLAARFLRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSGYGSG 64
RA+GLVVLVLLMVDLTLAAR LRGY GGG+GGGGGGGEG GP SGSGYGSGYGSGYGSG
Sbjct: 7 RAIGLVVLVLLMVDLTLAARSLRGY--GGGTGGGGGGGEGFGP-SGSGYGSGYGSGYGSG 66
Query: 65 YGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSGSGSGYG 124
+GDE Y E Y PYGPYGPYGSGGGGGGGGGGGGGGG A GA YGRGF GSGYG
Sbjct: 67 FGDEAY-----EPYEPYGPYGPYGSGGGGGGGGGGGGGGG-ATGAGYGRGF----GSGYG 126
Query: 125 SGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGGGGG 182
SGGG+ RGGGGGGGGGRGGGGGGGSG GSGSGYGSGYGSG GYG+G GRGGGGGGGG
Sbjct: 127 SGGGIGRGGGGGGGGGRGGGGGGGSGTGSGSGYGSGYGSGGGYGNGRGRGGGGGGGG 170
BLAST of Lcy13g006140 vs. ExPASy TrEMBL
Match:
A0A1U7V8I6 (putative glycine-rich cell wall structural protein 1 OS=Nicotiana sylvestris OX=4096 GN=LOC104216127 PE=4 SV=1)
HSP 1 Score: 107.5 bits (267), Expect = 7.3e-20
Identity = 147/214 (68.69%), Postives = 158/214 (73.83%), Query Frame = 0
Query: 1 MACARAVGLVVLVLLMVDLTLAARF--LRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
M ++ +G +L+LL VDL AARF RG GGGGG GGGGGGG GS +GSGYGSGYG
Sbjct: 1 MGYSKIIGAALLILLFVDLAFAARFYGARG-GGGGGGGGGGGGGGGSALGAGSGYGSGYG 60
Query: 61 SGYGSGYGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSG 120
SG GSGYG+ G +GSGGGGGGGGGGGGGGG GA GRG GSG
Sbjct: 61 SGEGSGYGEAD---------------GVFGSGGGGGGGGGGGGGGG--GGANSGRGSGSG 120
Query: 121 SGSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGG 180
GSGYGSGGG+ RGGGGGGGGG+GGGGGGGS G+GSGYGSG GSG GYGSGGGRGGGGG
Sbjct: 121 YGSGYGSGGGIGRGGGGGGGGGQGGGGGGGSSSGNGSGYGSGSGSGSGYGSGGGRGGGGG 180
Query: 181 GGGGGGGGGMGGGSGYGSGYGSGYGSGYGGGADE 213
GGGGGGGGG GG SG GSGYGSG G G G G DE
Sbjct: 181 GGGGGGGGGGGGSSGNGSGYGSGSGYGSGSGGDE 196
BLAST of Lcy13g006140 vs. NCBI nr
Match:
XP_023550088.1 (glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 213.4 bits (542), Expect = 1.9e-51
Identity = 190/213 (89.20%), Postives = 193/213 (90.61%), Query Frame = 0
Query: 1 MACARAVGLVVLVLLMVDLTLAARFLRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSG 60
MA A+GLV+LVLLM DLTLAARFLRGY GGGSGGGGGGGEGS PWSGSGYGSGYGSG
Sbjct: 1 MATTGAIGLVLLVLLMADLTLAARFLRGY--GGGSGGGGGGGEGSRPWSGSGYGSGYGSG 60
Query: 61 YGSGYGDEGYSRYGDEGYGPYGPYGPYGS-GGGGGGGGGGGGGGGSANGAAYGRGFGSGS 120
YGSGYGD GY RYGDEGYGPYGPYGPYGS GGGGGGGGGGGGGGG ANGA YG GFGSGS
Sbjct: 61 YGSGYGDGGYPRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGGGANGAGYGHGFGSGS 120
Query: 121 GSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGGG 180
GSGYGSGGGV RGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSG GYG+GGGRGGGGGG
Sbjct: 121 GSGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGNGGGRGGGGGG 180
Query: 181 GGGGGGGGMGG-GSGYGSGYGSGYGSGYGGGAD 212
GGGGGGGG GG G G GSGYGSGYGSGYGGG D
Sbjct: 181 GGGGGGGGGGGEGMGGGSGYGSGYGSGYGGGGD 211
BLAST of Lcy13g006140 vs. NCBI nr
Match:
KAG6601193.1 (hypothetical protein SDJN03_06426, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 206.5 bits (524), Expect = 2.4e-49
Identity = 187/214 (87.38%), Postives = 190/214 (88.79%), Query Frame = 0
Query: 1 MACARAVGLVVLVLLMVDLTLAARFLRGY--GGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
MA +GLV+LVLLM DLTLAARFLRGY GGGGGSGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1 MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
Query: 61 SGYGSGYGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSG 120
SGYGSGYGD GY RYGDE YGPYGPYGSGGGGGGGGGGGGGGG ANGA YG GFGSG
Sbjct: 61 SGYGSGYGDGGYPRYGDE---EYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSG 120
Query: 121 SGSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGG 180
SGSGYGSGGGV RGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSG GYG+GGGRGGGGG
Sbjct: 121 SGSGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGNGGGRGGGGG 180
Query: 181 GGGGGGGGGMGG-GSGYGSGYGSGYGSGYGGGAD 212
GGGGGGGGG GG G G GSGYGSGYGSGYGGG D
Sbjct: 181 GGGGGGGGGGGGEGMGGGSGYGSGYGSGYGGGGD 211
BLAST of Lcy13g006140 vs. NCBI nr
Match:
XP_022990525.1 (putative glycine-rich cell wall structural protein 1 [Cucurbita maxima])
HSP 1 Score: 204.1 bits (518), Expect = 1.2e-48
Identity = 188/214 (87.85%), Postives = 191/214 (89.25%), Query Frame = 0
Query: 1 MACARAVGLVVLVLLMVDLTLAARFLRGY--GGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
MA A+GLV+LVLLM DLTLAARFLRGY GGGGGSGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1 MATNGAIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
Query: 61 SGYGSGYGDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSG 120
SGYGSGYGD GY RYGDEG YGPYGSGGGGGGGGGGGGGGGSANGA YG+GFGSG
Sbjct: 61 SGYGSGYGDGGYPRYGDEG------YGPYGSGGGGGGGGGGGGGGGSANGAGYGQGFGSG 120
Query: 121 SGSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGG 180
SGSGYGSGGGV RGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSG GYGSGGGRGGGGG
Sbjct: 121 SGSGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGG 180
Query: 181 GGGGGGGGGMGG-GSGYGSGYGSGYGSGYGGGAD 212
GGGGGGGGG GG G G GSGYGSGYGSGYGGG D
Sbjct: 181 GGGGGGGGGGGGEGMGGGSGYGSGYGSGYGGGGD 208
BLAST of Lcy13g006140 vs. NCBI nr
Match:
XP_031741764.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus])
HSP 1 Score: 196.1 bits (497), Expect = 3.2e-46
Identity = 184/216 (85.19%), Postives = 189/216 (87.50%), Query Frame = 0
Query: 1 MACARAVGLVVLVLLMVDLTLAARFLRGYGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSG 60
MA +A GLV+LVLLM+DL LAARF RGY GGGSGGGGGGGEGSGPWSGSGYGSGYGSG
Sbjct: 1 MATTKAAGLVILVLLMLDLALAARFFRGY--GGGSGGGGGGGEGSGPWSGSGYGSGYGSG 60
Query: 61 YGSGY-GDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFGSGS 120
YGSGY G+EGYSRYGDE G YGPYGPY SGGGGGGGGGGGGGGGSA GA YGRGFG+GS
Sbjct: 61 YGSGYGGEEGYSRYGDE--GRYGPYGPY-SGGGGGGGGGGGGGGGSAIGAEYGRGFGAGS 120
Query: 121 GSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGGGGG 180
GSGYGSGGGV RGGGGGGG GGGGGGGSGIGSGSGYGSGYGSG GYGSGGGRGGGGGG
Sbjct: 121 GSGYGSGGGVGRGGGGGGGS--GGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGG 180
Query: 181 GGGGGGGGMGGGSGYGSGYGSGYGSGYGGGADEESP 216
GGGGGGG G GSGYGSGYGSGYGGG DEESP
Sbjct: 181 GGGGGGG------GGGSGYGSGYGSGYGGGGDEESP 203
BLAST of Lcy13g006140 vs. NCBI nr
Match:
XP_008447018.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])
HSP 1 Score: 193.4 bits (490), Expect = 2.1e-45
Identity = 187/220 (85.00%), Postives = 191/220 (86.82%), Query Frame = 0
Query: 1 MACARAVGLVVLVLLMVDLTLAARFLRGY--GGGGGSGGGGGGGEGS-GPWSGSGYGSGY 60
MA +AVG VVLVLLM+DL LAARF RGY GGGGGSGGGGGGGEGS GPW GSGYGSGY
Sbjct: 1 MATTKAVGFVVLVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGGPWPGSGYGSGY 60
Query: 61 GSGYGSGY-GDEGYSRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGSANGAAYGRGFG 120
GSGYGSGY G+EGYSRYGDEGYGPYG Y SGGGGGGGGGGGGGGGSA GA YGRGFG
Sbjct: 61 GSGYGSGYGGEEGYSRYGDEGYGPYGRY----SGGGGGGGGGGGGGGGSAIGAEYGRGFG 120
Query: 121 SGSGSGYGSGGGVSRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGEGYGSGGGRGGG 180
G GSGYGSGGGV RGGGGGGG GGGGGGGSG+GSGSGYGSGYGSG GYGSGGGRGGG
Sbjct: 121 MGGGSGYGSGGGVGRGGGGGGGS--GGGGGGGSGVGSGSGYGSGYGSGGGYGSGGGRGGG 180
Query: 181 GG-GGGGGGGGGMGGGSGYGSGYGSGYGSGYGGGADEESP 216
GG GGGGGGGGG GGG G GSGYGSGYGSGYGGG DEESP
Sbjct: 181 GGVGGGGGGGGGGGGGMGGGSGYGSGYGSGYGGGGDEESP 214
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P0C5C7 | 1.4e-04 | 58.94 | Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. indica OX=399... | [more] |
A3C5A7 | 1.4e-04 | 58.94 | Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. japonica OX=3... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1JQB8 | 5.7e-49 | 87.85 | putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661... | [more] |
A0A0A0KUV7 | 2.0e-46 | 84.72 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622440 PE=4 SV=1 | [more] |
A0A1S3BGF1 | 1.0e-45 | 85.00 | glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... | [more] |
A0A6J1CF67 | 9.8e-33 | 83.62 | putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3... | [more] |
A0A1U7V8I6 | 7.3e-20 | 68.69 | putative glycine-rich cell wall structural protein 1 OS=Nicotiana sylvestris OX=... | [more] |
Match Name | E-value | Identity | Description | |
XP_023550088.1 | 1.9e-51 | 89.20 | glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo] | [more] |
KAG6601193.1 | 2.4e-49 | 87.38 | hypothetical protein SDJN03_06426, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022990525.1 | 1.2e-48 | 87.85 | putative glycine-rich cell wall structural protein 1 [Cucurbita maxima] | [more] |
XP_031741764.1 | 3.2e-46 | 85.19 | glycine-rich cell wall structural protein 2 [Cucumis sativus] | [more] |
XP_008447018.1 | 2.1e-45 | 85.00 | PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |