Lcy13g006100 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g006100
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	cyclin-dependent protein kinase inhibitor SMR1-like
Location	Chr13: 5333627 .. 5334164 (+)
RNA-Seq Expression	Lcy13g006100
Synteny	Lcy13g006100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAACACCAAACAAACATTATTCTTCAATTTTCACCAAAATCTCTCTCTCTCTCTCTCTCTATACTTGTATTTATCTGTATCATCACGAAGCTCTCAGAAATGTCCACAGACCTCGATCTCCGACGGACGTTGCTCGATATCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTCGTCAATGGCGGCGGATATTCAGAAAGAGAGAATCGACGACTCCGCCGCCGAAGAATTGTGTTGCCGAACGCCGACGTCGGCAGAGAACAAGATTCCGGAGGTGCTACAATGTCCGCCGGCGCCGCGGAAGCGGAAGAGGCCTCCGACTTGTCGAAGGAGACTGATCGAGCTTGAATTCGTGGAGATCGTGAATAGAGAAGAGATCGAACCGTATTTAACCGCGAGTTTCGAGCACGAAGACAGAGTTAGAAAATCCGCTAAACGAAGCTTCTGCGAGTGTAAATGATCGATTGTTTCGCCAATCGCCATTGTTAACGAGCCTTTTCTTTTAATTCTTTCTTTCTTTCTTTCTTT

mRNA sequence

CTCAACACCAAACAAACATTATTCTTCAATTTTCACCAAAATCTCTCTCTCTCTCTCTCTCTATACTTGTATTTATCTGTATCATCACGAAGCTCTCAGAAATGTCCACAGACCTCGATCTCCGACGGACGTTGCTCGATATCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTCGTCAATGGCGGCGGATATTCAGAAAGAGAGAATCGACGACTCCGCCGCCGAAGAATTGTGTTGCCGAACGCCGACGTCGGCAGAGAACAAGATTCCGGAGGTGCTACAATGTCCGCCGGCGCCGCGGAAGCGGAAGAGGCCTCCGACTTGTCGAAGGAGACTGATCGAGCTTGAATTCGTGGAGATCGTGAATAGAGAAGAGATCGAACCGTATTTAACCGCGAGTTTCGAGCACGAAGACAGAGTTAGAAAATCCGCTAAACGAAGCTTCTGCGAGTGTAAATGATCGATTGTTTCGCCAATCGCCATTGTTAACGAGCCTTTTCTTTTAATTCTTTCTTTCTTTCTTTCTTT

Coding sequence (CDS)

ATGTCCACAGACCTCGATCTCCGACGGACGTTGCTCGATATCGTCCGCCGTCCGGCGATCAAGCTTCAAATTCCACGGCCGTCGTCAATGGCGGCGGATATTCAGAAAGAGAGAATCGACGACTCCGCCGCCGAAGAATTGTGTTGCCGAACGCCGACGTCGGCAGAGAACAAGATTCCGGAGGTGCTACAATGTCCGCCGGCGCCGCGGAAGCGGAAGAGGCCTCCGACTTGTCGAAGGAGACTGATCGAGCTTGAATTCGTGGAGATCGTGAATAGAGAAGAGATCGAACCGTATTTAACCGCGAGTTTCGAGCACGAAGACAGAGTTAGAAAATCCGCTAAACGAAGCTTCTGCGAGTGTAAATGA

Protein sequence

MSTDLDLRRTLLDIVRRPAIKLQIPRPSSMAADIQKERIDDSAAEELCCRTPTSAENKIPEVLQCPPAPRKRKRPPTCRRRLIELEFVEIVNREEIEPYLTASFEHEDRVRKSAKRSFCECK

Homology

[Close]

BLAST of Lcy13g006100 vs. ExPASy Swiss-Prot
Match: Q9LPP4 (Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana OX=3702 GN=SMR1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.6e-07
Identity = 36/116 (31.03%), Postives = 58/116 (50.00%), Query Frame = 0


Query: 21  KLQIPRPSSMAADIQKERID--DSAAEELCCRTPTSAENKIPEVLQCPPAPRKRKRPP-- 80
           K   P P  + +   K + D  D   ++L C TPTS E+KIP V+  PP P ++ RPP  
Sbjct: 11  KFNFPTPIKIRSKTSKTKKDEGDDDEDDLRCSTPTSQEHKIPAVVDSPPPPPRKPRPPPS 70

Query: 81  -----------TCRRRLIELEFVEIVNREEIEPYLTASFEHEDRVRKSAKRSFCEC 122
                      +C+R+L+      I+NREEI+ + ++ + +E       +RS+  C
Sbjct: 71  APSATAALMIRSCKRKLLVSTCEIIMNREEIDRFFSSVY-NETSTTAKRRRSYPYC 125

[Close]

BLAST of Lcy13g006100 vs. ExPASy Swiss-Prot
Match: Q29Q81 (Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 GN=SMR6 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.6e-06
Identity = 24/64 (37.50%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 20 IKLQIPRPSSMAADIQKERIDDSAAEELCCRTPTSAENKIPEVLQCPPAPRKRKRPPTCR 79
          +K ++  P  +  +++++  ++   EE C  TPT+ E KIPE+L+CPPAPRKR+    CR
Sbjct: 34 VKTKLRAPPEIVTEVEEDCYNE---EEECSTTPTAKETKIPELLECPPAPRKRRPALKCR 93

Query: 80 RRLI 84
            ++
Sbjct: 94 SNVV 94

[Close]

BLAST of Lcy13g006100 vs. ExPASy Swiss-Prot
Match: Q9LZ60 (Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 GN=SMR3 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.0e-04
Identity = 41/104 (39.42%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 21  KLQIP-RPSSMAADIQKERIDDSAAEELCCRTPTSAENKIPEV--LQCPPAPRKRK--RP 80
           K+++P RP     D   E  D +  EE  C+TPTS+++KIPEV    CPPAPRK K  R 
Sbjct: 17  KIRLPTRPELDIPDSDHE--DPTVNEEEGCKTPTSSDHKIPEVKYTLCPPAPRKPKPNRS 76

Query: 81  PTCRRRLIELEFVEIVNREEIEPYLTASFEHED---RVRKSAKR 117
              +R+L     V +VNR  I+         ED   R++KS K+
Sbjct: 77  SGTKRKLTP---VNVVNRIPIDLSREIEMFFEDLDRRIKKSRKQ 115

[Close]

BLAST of Lcy13g006100 vs. ExPASy TrEMBL
Match: A0A6J1GZ63 (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita moschata OX=3662 GN=LOC111458554 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.1e-49
Identity = 110/130 (84.62%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 1   MSTDLDLRRTLLDIVRRPAIKLQIPRP-SSMAAD-----IQKERID--DSAAEELCCRTP 60
           MSTDLDLRRTLL++VRRPAIKLQIPRP SSMAAD     IQKERID  D  AEELCCRTP
Sbjct: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTP 60

Query: 61  TSAENKIPEVLQCPPAPRKRKRPPTCRRRLIELEFVEIVNREEIEPYLTASFEHEDRVRK 120
           TSAENKIP VLQCPPAPRKRKRPPTCRRRLIELEFVEIV+REEIEPY T+SF+HE+RV+K
Sbjct: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120

Query: 121 SAKRSFCECK 123
           SAK SFCECK
Sbjct: 121 SAKISFCECK 130

[Close]

BLAST of Lcy13g006100 vs. ExPASy TrEMBL
Match: A0A6J1JRA3 (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita maxima OX=3661 GN=LOC111489107 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.5e-49
Identity = 109/130 (83.85%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1   MSTDLDLRRTLLDIVRRPAIKLQIPRP-SSMAAD-----IQKERID--DSAAEELCCRTP 60
           MSTDLDLRRTLL++VRRPAIKLQIPRP SSMAAD     IQKERID  D   EELCCRTP
Sbjct: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGDEELCCRTP 60

Query: 61  TSAENKIPEVLQCPPAPRKRKRPPTCRRRLIELEFVEIVNREEIEPYLTASFEHEDRVRK 120
           TSAENKIP VLQCPPAPRKRKRPPTCRRRLIELEFVEIV+REEIEPY T+SF+HE+RV+K
Sbjct: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120

Query: 121 SAKRSFCECK 123
           SAK SFCECK
Sbjct: 121 SAKISFCECK 130

[Close]

BLAST of Lcy13g006100 vs. ExPASy TrEMBL
Match: A0A5D3CD68 (Cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002260 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.2e-46
Identity = 104/133 (78.20%), Postives = 114/133 (85.71%), Query Frame = 0


Query: 1   MSTDLDLRRTLLDIVRRPAIKLQIPRPSS---MAAD-----IQKERID---DSAAEELCC 60
           MST+LDLRRTLL+IVRRP IKLQIP PS+   M  D     IQK+RID   D  AEELCC
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPLPSTAVVMGGDRGGVIIQKDRIDKGEDGGAEELCC 60

Query: 61  RTPTSAENKIPEVLQCPPAPRKRKRPPTCRRRLIELEFVEIVNREEIEPYLTASFEHEDR 120
           RTPTSAENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIV+R+EIEPYL ASF+HEDR
Sbjct: 61  RTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNASFDHEDR 120

Query: 121 VRKSAKRSFCECK 123
           VRKSAKRSFCECK
Sbjct: 121 VRKSAKRSFCECK 133

[Close]

BLAST of Lcy13g006100 vs. ExPASy TrEMBL
Match: A0A1S3BFF9 (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo OX=3656 GN=LOC103489420 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.2e-46
Identity = 104/133 (78.20%), Postives = 114/133 (85.71%), Query Frame = 0


Query: 1   MSTDLDLRRTLLDIVRRPAIKLQIPRPSS---MAAD-----IQKERID---DSAAEELCC 60
           MST+LDLRRTLL+IVRRP IKLQIP PS+   M  D     IQK+RID   D  AEELCC
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPLPSTAVVMGGDRGGVIIQKDRIDKGEDGGAEELCC 60

Query: 61  RTPTSAENKIPEVLQCPPAPRKRKRPPTCRRRLIELEFVEIVNREEIEPYLTASFEHEDR 120
           RTPTSAENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIV+R+EIEPYL ASF+HEDR
Sbjct: 61  RTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNASFDHEDR 120

Query: 121 VRKSAKRSFCECK 123
           VRKSAKRSFCECK
Sbjct: 121 VRKSAKRSFCECK 133

[Close]

BLAST of Lcy13g006100 vs. ExPASy TrEMBL
Match: A0A6J1HSZ5 (cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita maxima OX=3661 GN=LOC111467503 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.8e-44
Identity = 99/134 (73.88%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MSTDLDLRRTLLDIVRRPAIKLQIPRPSSMAAD----IQKERIDDSAA--------EELC 60
           MST LDLRRT L+ VRRP + L IPRPSS A D    IQK+ ID +A         EELC
Sbjct: 1   MSTGLDLRRTFLETVRRPDLNLPIPRPSSSAPDHSDTIQKQSIDTTATASSAAAEEEELC 60

Query: 61  CRTPTSAENKIPEVLQCPPAPRKRKRPPTCRRRLIELEFVEIVNREEIEPYLTASFEHED 120
           CRTPTSAENKIP +LQCPPAPRKRKRPP+CRRRL+ELEFV+IVNRE+IEPYL +SFEHED
Sbjct: 61  CRTPTSAENKIPALLQCPPAPRKRKRPPSCRRRLMELEFVQIVNREDIEPYLNSSFEHED 120

Query: 121 RVRKSAKRSFCECK 123
           RVRKSAKRSFCECK
Sbjct: 121 RVRKSAKRSFCECK 134

[Close]

BLAST of Lcy13g006100 vs. NCBI nr
Match: XP_022957068.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita moschata] >KAG6601198.1 hypothetical protein SDJN03_06431, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031993.1 hypothetical protein SDJN02_06035, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 205.7 bits (522), Expect = 2.3e-49
Identity = 110/130 (84.62%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 1   MSTDLDLRRTLLDIVRRPAIKLQIPRP-SSMAAD-----IQKERID--DSAAEELCCRTP 60
           MSTDLDLRRTLL++VRRPAIKLQIPRP SSMAAD     IQKERID  D  AEELCCRTP
Sbjct: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGAEELCCRTP 60

Query: 61  TSAENKIPEVLQCPPAPRKRKRPPTCRRRLIELEFVEIVNREEIEPYLTASFEHEDRVRK 120
           TSAENKIP VLQCPPAPRKRKRPPTCRRRLIELEFVEIV+REEIEPY T+SF+HE+RV+K
Sbjct: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120

Query: 121 SAKRSFCECK 123
           SAK SFCECK
Sbjct: 121 SAKISFCECK 130

[Close]

BLAST of Lcy13g006100 vs. NCBI nr
Match: XP_022992922.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima])

HSP 1 Score: 203.4 bits (516), Expect = 1.1e-48
Identity = 109/130 (83.85%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1   MSTDLDLRRTLLDIVRRPAIKLQIPRP-SSMAAD-----IQKERID--DSAAEELCCRTP 60
           MSTDLDLRRTLL++VRRPAIKLQIPRP SSMAAD     IQKERID  D   EELCCRTP
Sbjct: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERIDNIDGGDEELCCRTP 60

Query: 61  TSAENKIPEVLQCPPAPRKRKRPPTCRRRLIELEFVEIVNREEIEPYLTASFEHEDRVRK 120
           TSAENKIP VLQCPPAPRKRKRPPTCRRRLIELEFVEIV+REEIEPY T+SF+HE+RV+K
Sbjct: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120

Query: 121 SAKRSFCECK 123
           SAK SFCECK
Sbjct: 121 SAKISFCECK 130

[Close]

BLAST of Lcy13g006100 vs. NCBI nr
Match: XP_023531359.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-48
Identity = 109/130 (83.85%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1   MSTDLDLRRTLLDIVRRPAIKLQIPRP-SSMAAD-----IQKERID--DSAAEELCCRTP 60
           MSTDLDLRRTLL++VRRPAIKLQIPRP SSMAAD     IQKER D  D  AEELCCRTP
Sbjct: 1   MSTDLDLRRTLLEVVRRPAIKLQIPRPLSSMAADHGGVIIQKERNDKIDGGAEELCCRTP 60

Query: 61  TSAENKIPEVLQCPPAPRKRKRPPTCRRRLIELEFVEIVNREEIEPYLTASFEHEDRVRK 120
           TSAENKIP VLQCPPAPRKRKRPPTCRRRLIELEFVEIV+REEIEPY T+SF+HE+RV+K
Sbjct: 61  TSAENKIPVVLQCPPAPRKRKRPPTCRRRLIELEFVEIVSREEIEPYFTSSFDHENRVKK 120

Query: 121 SAKRSFCECK 123
           SAK SFCECK
Sbjct: 121 SAKISFCECK 130

[Close]

BLAST of Lcy13g006100 vs. NCBI nr
Match: XP_038893025.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Benincasa hispida])

HSP 1 Score: 198.4 bits (503), Expect = 3.7e-47
Identity = 106/128 (82.81%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MSTDLDLRRTLLDIVRRPAIKLQIPRPS-SMAAD-----IQKERIDDSAAEELCCRTPTS 60
           MSTDLDLRRTLL+IVRRP IKLQIP PS SMA D     IQK+RI D   EELCCRTPTS
Sbjct: 1   MSTDLDLRRTLLEIVRRPPIKLQIPLPSTSMAGDHGGVIIQKDRITDE-EEELCCRTPTS 60

Query: 61  AENKIPEVLQCPPAPRKRKRPPTCRRRLIELEFVEIVNREEIEPYLTASFEHEDRVRKSA 120
           AENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIVNREEIEPYL +SF+HEDRVRKSA
Sbjct: 61  AENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVNREEIEPYLRSSFDHEDRVRKSA 120

Query: 121 KRSFCECK 123
           KRSFCECK
Sbjct: 121 KRSFCECK 127

[Close]

BLAST of Lcy13g006100 vs. NCBI nr
Match: XP_008446800.1 (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo] >KAA0034681.1 cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo var. makuwa] >TYK09232.1 cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 2.4e-46
Identity = 104/133 (78.20%), Postives = 114/133 (85.71%), Query Frame = 0


Query: 1   MSTDLDLRRTLLDIVRRPAIKLQIPRPSS---MAAD-----IQKERID---DSAAEELCC 60
           MST+LDLRRTLL+IVRRP IKLQIP PS+   M  D     IQK+RID   D  AEELCC
Sbjct: 1   MSTELDLRRTLLEIVRRPPIKLQIPLPSTAVVMGGDRGGVIIQKDRIDKGEDGGAEELCC 60

Query: 61  RTPTSAENKIPEVLQCPPAPRKRKRPPTCRRRLIELEFVEIVNREEIEPYLTASFEHEDR 120
           RTPTSAENKIP V+QCPPAPRKRKRPP+CRRRL+ELEFVEIV+R+EIEPYL ASF+HEDR
Sbjct: 61  RTPTSAENKIPAVVQCPPAPRKRKRPPSCRRRLMELEFVEIVHRDEIEPYLNASFDHEDR 120

Query: 121 VRKSAKRSFCECK 123
           VRKSAKRSFCECK
Sbjct: 121 VRKSAKRSFCECK 133

[Close]

BLAST of Lcy13g006100 vs. TAIR 10
Match: AT3G10525.1 (LOSS OF GIANT CELLS FROM ORGANS )

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-08
Identity = 36/116 (31.03%), Postives = 58/116 (50.00%), Query Frame = 0


Query: 21  KLQIPRPSSMAADIQKERID--DSAAEELCCRTPTSAENKIPEVLQCPPAPRKRKRPP-- 80
           K   P P  + +   K + D  D   ++L C TPTS E+KIP V+  PP P ++ RPP  
Sbjct: 11  KFNFPTPIKIRSKTSKTKKDEGDDDEDDLRCSTPTSQEHKIPAVVDSPPPPPRKPRPPPS 70

Query: 81  -----------TCRRRLIELEFVEIVNREEIEPYLTASFEHEDRVRKSAKRSFCEC 122
                      +C+R+L+      I+NREEI+ + ++ + +E       +RS+  C
Sbjct: 71  APSATAALMIRSCKRKLLVSTCEIIMNREEIDRFFSSVY-NETSTTAKRRRSYPYC 125

[Close]

BLAST of Lcy13g006100 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 4.0e-07
Identity = 24/64 (37.50%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 20 IKLQIPRPSSMAADIQKERIDDSAAEELCCRTPTSAENKIPEVLQCPPAPRKRKRPPTCR 79
          +K ++  P  +  +++++  ++   EE C  TPT+ E KIPE+L+CPPAPRKR+    CR
Sbjct: 34 VKTKLRAPPEIVTEVEEDCYNE---EEECSTTPTAKETKIPELLECPPAPRKRRPALKCR 93

Query: 80 RRLI 84
            ++
Sbjct: 94 SNVV 94

[Close]

BLAST of Lcy13g006100 vs. TAIR 10
Match: AT5G02420.1 (unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-05
Identity = 41/104 (39.42%), Postives = 56/104 (53.85%), Query Frame = 0


Query: 21  KLQIP-RPSSMAADIQKERIDDSAAEELCCRTPTSAENKIPEV--LQCPPAPRKRK--RP 80
           K+++P RP     D   E  D +  EE  C+TPTS+++KIPEV    CPPAPRK K  R 
Sbjct: 17  KIRLPTRPELDIPDSDHE--DPTVNEEEGCKTPTSSDHKIPEVKYTLCPPAPRKPKPNRS 76

Query: 81  PTCRRRLIELEFVEIVNREEIEPYLTASFEHED---RVRKSAKR 117
              +R+L     V +VNR  I+         ED   R++KS K+
Sbjct: 77  SGTKRKLTP---VNVVNRIPIDLSREIEMFFEDLDRRIKKSRKQ 115

[Close]

BLAST of Lcy13g006100 vs. TAIR 10
Match: AT1G08180.1 (unknown protein; Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 3.1e-04
Identity = 37/108 (34.26%), Postives = 51/108 (47.22%), Query Frame = 0


Query: 11  LLDIVRRPAIKLQIPRPSSMAADIQKERIDDSAAEELCCRTPTSAENKIPEVLQCPPAPR 70
           LL+ +       Q PR S    D Q     +   E LC  TPTS+++KIPEV  CPP PR
Sbjct: 4   LLETLEEEKTVEQKPR-SQEEEDHQDSSKKEELLESLC--TPTSSDHKIPEVETCPPPPR 63

Query: 71  KRKRPPTCRRRL---IELEFVEI--VNREEIEPYLTASFEHEDRVRKS 114
           KR R  +  ++     +L F E   V  +E+E        H  + R+S
Sbjct: 64  KRPREISLTKKTRLSKDLRFFEATDVGSQEVETLFVHEPNHVRKKRRS 108

[Close]

BLAST of Lcy13g006100 vs. TAIR 10
Match: AT2G37610.1 (unknown protein; Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 5.3e-04
Identity = 25/61 (40.98%), Postives = 35/61 (57.38%), Query Frame = 0


Query: 34  IQKERIDDSAAEELC------CRTPTSAENKIPEVLQCPPAPRKRK------RPPTCRRR 83
           ++++R+D+   EE+        +TPT  EN+IP V +CPPAP KR       R   CRRR
Sbjct: 75  LKRKRLDEEEEEEVVEEENDGFKTPTRPENRIPIVRECPPAPMKRSSEMFRGRTMYCRRR 134

The following BLAST results are available for this feature:

BLAST of Lcy13g006100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LPP4	8.6e-07	31.03	Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q29Q81	5.6e-06	37.50	Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LZ60	4.0e-04	39.42	Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Lcy13g006100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZ63	1.1e-49	84.62	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1JRA3	5.5e-49	83.85	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A5D3CD68	1.2e-46	78.20	Cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo var. makuwa ...	[more]
A0A1S3BFF9	1.2e-46	78.20	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1HSZ5	1.8e-44	73.88	cyclin-dependent protein kinase inhibitor SMR1-like OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of Lcy13g006100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957068.1	2.3e-49	84.62	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita moschata] >KAG660...	[more]
XP_022992922.1	1.1e-48	83.85	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima]	[more]
XP_023531359.1	1.5e-48	83.85	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038893025.1	3.7e-47	82.81	cyclin-dependent protein kinase inhibitor SMR1-like [Benincasa hispida]	[more]
XP_008446800.1	2.4e-46	78.20	PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo] >K...	[more]

BLAST of Lcy13g006100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10525.1	6.1e-08	31.03	LOSS OF GIANT CELLS FROM ORGANS	[more]
AT5G40460.1	4.0e-07	37.50	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G02420.1	2.8e-05	39.42	unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bac...	[more]
AT1G08180.1	3.1e-04	34.26	unknown protein; Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bact...	[more]
AT2G37610.1	5.3e-04	40.98	unknown protein; Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 122..122
None	No IPR available	PANTHER	PTHR33142:SF57	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR1-LIKE	coord: 33..117
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 33..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g006100.1	Lcy13g006100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus