Lcy13g005990 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g005990
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	GABA transporter 1
Location	Chr13: 5225630 .. 5226829 (+)
RNA-Seq Expression	Lcy13g005990
Synteny	Lcy13g005990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTTGGAGTATGCTATGGTGCTGTTGTTTTTGGAATTCTTCTAGGTGGTCAAGACCTAAAGGTGAGTTTCCCCATTTTATATATTTTACATACCGACCCTTATTTTGTAACTGCCTTGTGAATTCAATCTTATTATTGATAGATTGATTTCAAATTTATAAACTTCACCCTAGGTACTAATGTTTACAAATTTATTTGAATACCTGAACTTATAAATCAATCAGTTGTAATTGACATTAATCCTTGATCGAGAAGTTAGAAGTTTGTGTCCATATTGTTCTCTTGGTTTCTCACCATGACCAATGCCTTTTGCTTTTTGCAAGTTTCAGCCGTCACCCGTGTATGATATCTTTATCTCCTTTCTTTCACTTCCAAACTCCTTACTTTTACCTATTTTAAAGAAAATCTTTGAGAAATTTGTAATTTTGTAGGGTTTGAAATGTGAATCTCGTACTGACTATTTATCTACGAGGTTAGAATTGTATGAGTTTTTTTAGAAATCAAATGTTGTAGGGATAAATAGTTAGTCTTGTGAGATTAGTTAAGATGTGCATGCATGCTGGTCCAAACACTCATTGATATATATATATATATATATAGAAATATATACTTTGGAATCGAGATGTTTGTGTATGGATTTGTAGCTAGGATAATTGATTTTTTGATATTTGAATCGAGGAAAAGAAAATAATGCATGTCACGTTTCTCTCCTACATGGTATATTGTTATTGTGGAGATAATGGAGTTTAAGTAAGTAGCGTAATTGTATACTCCCCTAGCTTAACAAAAAGAAACATCGTTGTTGATAGACCTAAGACAATTATTGACAAACCTAGAGTTAGACACGTAGACCGTAAGGAAAATTGAGTTCAATTATGAGATTAGGTCCACTTGAAAATGTAATTGTCTATTTCTGCAGGTTTACTTACGACCAACAAACGAAGTATTTGAGAAGAAATTTGCAGATCCAAATAAAATTCAATTTTCGATCCGCAACATTGTGCCGAGGTTGATATCGTGGTCATTGTCGGTGGTCGTTGCCACCATTTTTGCAGCAATGTTTCCTTTCTTTAGGGATCTAATGGCACTATTATATTGGGAGCATTTGGATGCATTCCTATTGACTTCATCATGGCTATGGTTTTCTACAATGCGACTTTCAAGCTTTCAAAGGGCAGCCTTGTTTTTTGGGTAA

mRNA sequence

ATGCAATTTGGAGTATGCTATGGTGCTGTTGTTTTTGGAATTCTTCTAGGTGGTCAAGACCTAAAGGTTTACTTACGACCAACAAACGAAGTATTTGAGAAGAAATTTGCAGATCCAAATAAAATTCAATTTTCGATCCGCAACATTGTGCCGAGGTTGATATCGTGGTCATTGTCGGTGGTCGTTGCCACCATTTTTGCAGCAATGTTTCCTTTCTTTAGGGATCTAATGGCACTATTATATTGGGAGCATTTGGATGCATTCCTATTGACTTCATCATGGCTATGGTTTTCTACAATGCGACTTTCAAGCTTTCAAAGGGCAGCCTTGTTTTTTGGGTAA

Coding sequence (CDS)

ATGCAATTTGGAGTATGCTATGGTGCTGTTGTTTTTGGAATTCTTCTAGGTGGTCAAGACCTAAAGGTTTACTTACGACCAACAAACGAAGTATTTGAGAAGAAATTTGCAGATCCAAATAAAATTCAATTTTCGATCCGCAACATTGTGCCGAGGTTGATATCGTGGTCATTGTCGGTGGTCGTTGCCACCATTTTTGCAGCAATGTTTCCTTTCTTTAGGGATCTAATGGCACTATTATATTGGGAGCATTTGGATGCATTCCTATTGACTTCATCATGGCTATGGTTTTCTACAATGCGACTTTCAAGCTTTCAAAGGGCAGCCTTGTTTTTTGGGTAA

Protein sequence

MQFGVCYGAVVFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALLYWEHLDAFLLTSSWLWFSTMRLSSFQRAALFFG

Homology

[Close]

BLAST of Lcy13g005990 vs. ExPASy Swiss-Prot
Match: F4HW02 (GABA transporter 1 OS=Arabidopsis thaliana OX=3702 GN=GAT1 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.0e-11
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 23  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL 81
           VYL+P N++ E   +DP K +FSIRN++PRL+  SL VV+ATI AAM PFF D+ +LL
Sbjct: 326 VYLQPINDILESVISDPTKKEFSIRNVIPRLVVRSLFVVMATIVAAMLPFFGDVNSLL 383

[Close]

BLAST of Lcy13g005990 vs. ExPASy Swiss-Prot
Match: Q8L4X4 (Probable GABA transporter 2 OS=Arabidopsis thaliana OX=3702 GN=At5g41800 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.7e-05
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 9   AVVFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAA 68
           AV+F +L       VY +   E+ EKK AD  K  FS RN+VPRLI  +L +      AA
Sbjct: 310 AVIFVLLQLFAIGLVYSQVAYEIMEKKSADTTKGIFSKRNLVPRLILRTLYMAFCGFMAA 369

Query: 69  MFPFFRDLMALL 81
           M PFF D+ A++
Sbjct: 370 MLPFFGDINAVV 381

[Close]

BLAST of Lcy13g005990 vs. ExPASy TrEMBL
Match: A0A6J1CBX9 (GABA transporter 1 OS=Momordica charantia OX=3673 GN=LOC111010245 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.8e-17
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 23  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL 81
           VYL+PTNE FEKKFADPNK QFSIRN+VPRLI+ SLSVV+ATIFAAM PFF DLMAL+
Sbjct: 339 VYLQPTNEAFEKKFADPNKSQFSIRNVVPRLITRSLSVVIATIFAAMVPFFGDLMALI 396

[Close]

BLAST of Lcy13g005990 vs. ExPASy TrEMBL
Match: A0A0A0KRH2 (Aa_trans domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G616330 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 23  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL 81
           VYL+PTNE FEKKFADPNK QFSIRNIVPRLIS SLSVV+ATI AAM PFF DLMAL+
Sbjct: 333 VYLQPTNEAFEKKFADPNKKQFSIRNIVPRLISRSLSVVIATILAAMLPFFGDLMALI 390

[Close]

BLAST of Lcy13g005990 vs. ExPASy TrEMBL
Match: A0A2I0W806 (GABA transporter 1 OS=Dendrobium catenatum OX=906689 GN=GAT1 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1   MQFGVCYGAVVFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSV 60
           +QF +C+ AVV G LL GQ +KVYL+PTNEV E  FADP K Q+S RN++PR+I  S+ V
Sbjct: 133 LQFSLCFTAVVAGTLLAGQSMKVYLQPTNEVLEGLFADPKKEQYSARNVIPRMIFRSIVV 192

Query: 61  VVATIFAAMFPFFRDLMALL 81
            V TI AAM PFF D++A++
Sbjct: 193 AVGTIIAAMLPFFGDIIAVV 212

[Close]

BLAST of Lcy13g005990 vs. ExPASy TrEMBL
Match: A0A1S3BFY3 (GABA transporter 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489412 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.4e-16
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 11  VFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMF 70
           +F +L       VYL+PTNE FEK+FADPNK QFSIRN++PRLIS SLSVV+ATI AAM 
Sbjct: 244 IFCLLQVSAVTSVYLQPTNEAFEKQFADPNKRQFSIRNVIPRLISRSLSVVIATILAAML 303

Query: 71  PFFRDLMALL 81
           PFF DLMAL+
Sbjct: 304 PFFGDLMALI 313

[Close]

BLAST of Lcy13g005990 vs. ExPASy TrEMBL
Match: A0A1S3BFE9 (GABA transporter 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489412 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.4e-16
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 11  VFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMF 70
           +F +L       VYL+PTNE FEK+FADPNK QFSIRN++PRLIS SLSVV+ATI AAM 
Sbjct: 321 IFCLLQVSAVTSVYLQPTNEAFEKQFADPNKRQFSIRNVIPRLISRSLSVVIATILAAML 380

Query: 71  PFFRDLMALL 81
           PFF DLMAL+
Sbjct: 381 PFFGDLMALI 390

[Close]

BLAST of Lcy13g005990 vs. NCBI nr
Match: XP_022139295.1 (GABA transporter 1 [Momordica charantia] >XP_022139296.1 GABA transporter 1 [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 23  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL 81
           VYL+PTNE FEKKFADPNK QFSIRN+VPRLI+ SLSVV+ATIFAAM PFF DLMAL+
Sbjct: 339 VYLQPTNEAFEKKFADPNKSQFSIRNVVPRLITRSLSVVIATIFAAMVPFFGDLMALI 396

[Close]

BLAST of Lcy13g005990 vs. NCBI nr
Match: XP_004142454.1 (GABA transporter 1 [Cucumis sativus] >KGN52213.1 hypothetical protein Csa_008215 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-16
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 23  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL 81
           VYL+PTNE FEKKFADPNK QFSIRNIVPRLIS SLSVV+ATI AAM PFF DLMAL+
Sbjct: 333 VYLQPTNEAFEKKFADPNKKQFSIRNIVPRLISRSLSVVIATILAAMLPFFGDLMALI 390

[Close]

BLAST of Lcy13g005990 vs. NCBI nr
Match: PKU71794.1 (GABA transporter 1 [Dendrobium catenatum])

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-16
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1   MQFGVCYGAVVFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSV 60
           +QF +C+ AVV G LL GQ +KVYL+PTNEV E  FADP K Q+S RN++PR+I  S+ V
Sbjct: 133 LQFSLCFTAVVAGTLLAGQSMKVYLQPTNEVLEGLFADPKKEQYSARNVIPRMIFRSIVV 192

Query: 61  VVATIFAAMFPFFRDLMALL 81
            V TI AAM PFF D++A++
Sbjct: 193 AVGTIIAAMLPFFGDIIAVV 212

[Close]

BLAST of Lcy13g005990 vs. NCBI nr
Match: XP_008446790.1 (PREDICTED: GABA transporter 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 9.0e-16
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 11  VFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMF 70
           +F +L       VYL+PTNE FEK+FADPNK QFSIRN++PRLIS SLSVV+ATI AAM 
Sbjct: 244 IFCLLQVSAVTSVYLQPTNEAFEKQFADPNKRQFSIRNVIPRLISRSLSVVIATILAAML 303

Query: 71  PFFRDLMALL 81
           PFF DLMAL+
Sbjct: 304 PFFGDLMALI 313

[Close]

BLAST of Lcy13g005990 vs. NCBI nr
Match: XP_008446789.1 (PREDICTED: GABA transporter 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 9.0e-16
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 11  VFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMF 70
           +F +L       VYL+PTNE FEK+FADPNK QFSIRN++PRLIS SLSVV+ATI AAM 
Sbjct: 321 IFCLLQVSAVTSVYLQPTNEAFEKQFADPNKRQFSIRNVIPRLISRSLSVVIATILAAML 380

Query: 71  PFFRDLMALL 81
           PFF DLMAL+
Sbjct: 381 PFFGDLMALI 390

[Close]

BLAST of Lcy13g005990 vs. TAIR 10
Match: AT1G08230.2 (Transmembrane amino acid transporter family protein )

HSP 1 Score: 68.2 bits (165), Expect = 4.9e-12
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 23  VYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAAMFPFFRDLMALL 81
           VYL+P N++ E   +DP K +FSIRN++PRL+  SL VV+ATI AAM PFF D+ +LL
Sbjct: 326 VYLQPINDILESVISDPTKKEFSIRNVIPRLVVRSLFVVMATIVAAMLPFFGDVNSLL 383

[Close]

BLAST of Lcy13g005990 vs. TAIR 10
Match: AT5G41800.1 (Transmembrane amino acid transporter family protein )

HSP 1 Score: 47.8 bits (112), Expect = 6.9e-06
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 9   AVVFGILLGGQDLKVYLRPTNEVFEKKFADPNKIQFSIRNIVPRLISWSLSVVVATIFAA 68
           AV+F +L       VY +   E+ EKK AD  K  FS RN+VPRLI  +L +      AA
Sbjct: 310 AVIFVLLQLFAIGLVYSQVAYEIMEKKSADTTKGIFSKRNLVPRLILRTLYMAFCGFMAA 369

Query: 69  MFPFFRDLMALL 81
           M PFF D+ A++
Sbjct: 370 MLPFFGDINAVV 381

The following BLAST results are available for this feature:

BLAST of Lcy13g005990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HW02	7.0e-11	56.90	GABA transporter 1 OS=Arabidopsis thaliana OX=3702 GN=GAT1 PE=1 SV=1	[more]
Q8L4X4	9.7e-05	43.06	Probable GABA transporter 2 OS=Arabidopsis thaliana OX=3702 GN=At5g41800 PE=1 SV...	[more]

BLAST of Lcy13g005990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBX9	8.8e-17	82.76	GABA transporter 1 OS=Momordica charantia OX=3673 GN=LOC111010245 PE=3 SV=1	[more]
A0A0A0KRH2	1.5e-16	84.48	Aa_trans domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G616330 PE...	[more]
A0A2I0W806	1.5e-16	57.50	GABA transporter 1 OS=Dendrobium catenatum OX=906689 GN=GAT1 PE=4 SV=1	[more]
A0A1S3BFY3	4.4e-16	68.57	GABA transporter 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489412 PE=3 ...	[more]
A0A1S3BFE9	4.4e-16	68.57	GABA transporter 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489412 PE=3 ...	[more]

BLAST of Lcy13g005990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139295.1	1.8e-16	82.76	GABA transporter 1 [Momordica charantia] >XP_022139296.1 GABA transporter 1 [Mom...	[more]
XP_004142454.1	3.1e-16	84.48	GABA transporter 1 [Cucumis sativus] >KGN52213.1 hypothetical protein Csa_008215...	[more]
PKU71794.1	3.1e-16	57.50	GABA transporter 1 [Dendrobium catenatum]	[more]
XP_008446790.1	9.0e-16	68.57	PREDICTED: GABA transporter 1-like isoform X2 [Cucumis melo]	[more]
XP_008446789.1	9.0e-16	68.57	PREDICTED: GABA transporter 1-like isoform X1 [Cucumis melo]	[more]

BLAST of Lcy13g005990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08230.2	4.9e-12	56.90	Transmembrane amino acid transporter family protein	[more]
AT5G41800.1	6.9e-06	43.06	Transmembrane amino acid transporter family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48017:SF38	GABA TRANSPORTER 1-LIKE	coord: 23..80
None	No IPR available	PANTHER	PTHR48017	OS05G0424000 PROTEIN-RELATED	coord: 23..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g005990.1	Lcy13g005990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006865	amino acid transport
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0015293	symporter activity