Lcy13g005670 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g005670
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	transformer-2 protein homolog alpha-like
Location	Chr13: 4871894 .. 4874531 (-)
RNA-Seq Expression	Lcy13g005670
Synteny	Lcy13g005670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGATGGCATTGATTTTGATGCTGCTTTATTCGTCTATGGTGGCTTCCTTTGCTTTGAGAGAGTTCTTCACAACAGGTATTTTCTTCCACTATTATGTATATATACTTTTTTATTTTGGTTAAATATATATCATCGAGTTACCCAATCTTTTAATATTTTTGTGTTTAGTCCTTAATCTTTAGTTAAATTACAAATTTAAGTCTTCGAACTTTCAAACTTTTATCTAATAGGGTCCTTAAAAACTTTCGACTTTGTGTTTAATGGGTGTGCTTAATTAATATTTCTACAACTTTTCAATCTTGTGCCTAATACATCTTTGTCCTATGCAACATTGTTTTAATTTTAATGATATTTTAGATACGAAATTGAAAGTTTATGATTTTATTAGACACAAAATTCAGTGTTTACATTTATGAACTATTTTGTGTTTACCTGAACTATTTAAGAATATATATATATATATATATATATATATATATATATATATATATATATATAATTTAGCAACCTACTAGACACTTTTTAAATTTTAGAGATCTATCGAACACAGACATGAAAGTTCAAGCATTAAACTTATAATTGAACCTTGATCTTTTAAATTTCCCTAACGTGTTAAACAATTCTCAATTAATTCCTTCTATTAACAAAAGTTGCTAAAATTTGTTAACTAAAAACGAATATATCATTTTTTTAATGATTAAAAAAAAAGCGAATATATCATTAAATTATTGTTTTATTAACATTTGGATATTTGTGTGGACATGGCACTACATACTACTTGAATCATGAAATCTAACTTGCCCTCTAGCAAAATTATATTTGATCCGCTCATCCGAAGGATCAATTTCTTCTAAATATGACATGTTCATGTGCTTATGTATATATATCCAAATATGTTCATGAAATAATAATTTAATGATATATTAGTTTTTTATTAACAAATTTTAATGATATTTTTATGGAATAATTCAATTTTTTTTTTAATACATCAAGGATACAACTTAGAATTTTAAAAAGACGAAGGACCAAATTTGATCCTTTAAAAAGATTGAAGAATAAATCAAGAAATCATTTTATTTTTATTCTTTCAATATCCGTATTAAAATTATCTATTTACTTTTTTGGGTATTATTCCACCATTTCGCTGAAAATGTTCTATTTTAGTATTTGTAATTTTTGTGATTCCCATATTTATATATAACATATATTAATTTTGATTTTAAAATGTTCTATCTTTCCACATATATTTGTGTGTATATATATATATATTCATGTTAGCGATATTTTTTTTTTTTTTTTGAGTACATGTTAGCGATATTTGGTTGATACTCCTTTTATATATTTCATTGATATTTGGTTCAACTACAAGTTTAGTTCATGAACTTTCAAGGTTGTGTCAATTTGGTCTAACTTTAAAAGGTTTCAAATAGGATCTCAAACTTTTAATTTTGTGTCCAATAAGTCATTGAACTTTAAAAAATATCCAATAGATCCTTAAACTTTCATTTTTGTTTCAAATAGGTCCCTTAACTTTTAATTTTGTGTCTAACAAGTCCTTGACCTATTCAACATTTTTTAAAATTTATAAGCTTACTAGATACAAAATTGAAAGTTTAGGCCCCGTTTGATAACTATTTGGTTTTTGAAAATTAAGCTTATAAACACTCCTTCCATCTCTAAGTTTCTTTGTTTTTTTATCTATCTTCCTCCCATGGTTTTAAAAACCAAGCCAATTTTTGGAAACTAAAAAAAGTAGTTTTCAAAAACTTGTTTTTGTTTTTGAAATTTGGCTAGGAATTCAAATGTGTCATAAACAAAAATGAAATCTATGATAAGGAAATTGGAAGAAAACAAGTATAATTTTCAAAAACAAAAAACCAAATGATTATCAAACGGGGCCTTAAGAGTCCCCAATAAGCATGAAATTCTACCTTGGTTAATTTTTAAAAATCTCAATTCAAGGACCTATTAGACACTTTTTAGAATTCAAGGACCAAATTGACATAATCGAAAGTTCAAGGACTAAACTTGCAATTTAACCTTGATATTTTTTATTCATAGAAATATCGACATGAGAACTATATATTTTGCAGATTCTAAACGCCAAGAATTTGACCATGTAGAAAAATATGGTAAAAATGGTGTTTTTCATCACATTGGTACAATATTCAATATAACTACAAATTCTCATGAGAGTCGACCAAGAGGTACAGGCGTGATCCCAATATATGCCGCTGGTTCTTCTGCACATCGTCGTGGAAATCATAACGCTGGAAATTACCATAAGAACTTCATGGGGTTTATAGTACTTGGAGTTTCCGCTTCAATTGCATATTTGTGTCGAGTTATCTGATACGAAGACATTCGAAACATCAATAAATAGTGTCGAGCAAAGCTCAACAATAATTGATATGTACCTTAACTAAGAGGTCAGAAGTTCAAATTCTCAACTTCTAAATGTTGTTGATCTAAAAAAAAAAATGAGAAGTGAATGTATTATTGTTATTTATTTATCAATAATACTTGTTGCATACCGGTATGTAAGATCTCACTGCATACCACCATTAAAATGACAAGTGAGAGAGATAATTTTTTTTCTTCTCATTTTCTTTTCCTTTTTTTTTTTTGAAAATAAAG

mRNA sequence

GAGATGGCATTGATTTTGATGCTGCTTTATTCGTCTATGGTGGCTTCCTTTGCTTTGAGAGAGTTCTTCACAACAGATTCTAAACGCCAAGAATTTGACCATGTAGAAAAATATGGTAAAAATGGTGTTTTTCATCACATTGGTACAATATTCAATATAACTACAAATTCTCATGAGAGTCGACCAAGAGGTACAGGCGTGATCCCAATATATGCCGCTGGTTCTTCTGCACATCGTCGTGGAAATCATAACGCTGGAAATTACCATAAGAACTTCATGGGGTTTATAGTACTTGGAGTTTCCGCTTCAATTGCATATTTGTGTCGAGTTATCTGATACGAAGACATTCGAAACATCAATAAATAGTGTCGAGCAAAGCTCAACAATAATTGATATGTACCTTAACTAAGAGGTCAGAAGTTCAAATTCTCAACTTCTAAATGTTGTTGATCTAAAAAAAAAAATGAGAAGTGAATGTATTATTGTTATTTATTTATCAATAATACTTGTTGCATACCGGTATGTAAGATCTCACTGCATACCACCATTAAAATGACAAGTGAGAGAGATAATTTTTTTTCTTCTCATTTTCTTTTCCTTTTTTTTTTTTGAAAATAAAG

Coding sequence (CDS)

ATGGCATTGATTTTGATGCTGCTTTATTCGTCTATGGTGGCTTCCTTTGCTTTGAGAGAGTTCTTCACAACAGATTCTAAACGCCAAGAATTTGACCATGTAGAAAAATATGGTAAAAATGGTGTTTTTCATCACATTGGTACAATATTCAATATAACTACAAATTCTCATGAGAGTCGACCAAGAGGTACAGGCGTGATCCCAATATATGCCGCTGGTTCTTCTGCACATCGTCGTGGAAATCATAACGCTGGAAATTACCATAAGAACTTCATGGGGTTTATAGTACTTGGAGTTTCCGCTTCAATTGCATATTTGTGTCGAGTTATCTGA

Protein sequence

MALILMLLYSSMVASFALREFFTTDSKRQEFDHVEKYGKNGVFHHIGTIFNITTNSHESRPRGTGVIPIYAAGSSAHRRGNHNAGNYHKNFMGFIVLGVSASIAYLCRVI

Homology

[Close]

BLAST of Lcy13g005670 vs. ExPASy TrEMBL
Match: A0A1S3BFU5 (transformer-2 protein homolog alpha-like OS=Cucumis melo OX=3656 GN=LOC103489385 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-08
Identity = 50/121 (41.32%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 1   MALILMLLYSSMVASFALREFFTTDS-KRQEFDHVEKYGKNGVFHHIGTIFNITTNSHES 60
           +ALIL+L+YSSMV SFA ++ F TDS K QE +H+EK+G+          +NI     E 
Sbjct: 10  IALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRR---------YNI-----EG 69

Query: 61  RPRGTGVIPIY---------AAGSSAHRRGNHNAGNYH-KNFMGFIVLGVSASIAYLCRV 111
           R   T  IPI+           G    R G + AG  H +N+M FI   VS S+AYLC +
Sbjct: 70  RHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGL 116

[Close]

BLAST of Lcy13g005670 vs. ExPASy TrEMBL
Match: A0A0A0KTE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613615 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.7e-07
Identity = 42/101 (41.58%), Postives = 55/101 (54.46%), Query Frame = 0


Query: 12  MVASFALREFFTTDSKRQEFDHVEKYGKNGVFHHIGTIFNITTNSHESRPRGTGVIPIYA 71
           M+ASFA  + FT DSK+                HI    +  +   E R  G GVIPIY 
Sbjct: 1   MMASFAFTQLFTIDSKQ----------------HITVREHNNSRFVERRGGGRGVIPIYV 60

Query: 72  AGSSAHRRG--NHNAGNYHKNFMGFIVLGVSASIAYLCRVI 111
           AG+S+ R G  +H+ GN   N++ FI++GVS SIA LCR I
Sbjct: 61  AGASSGRHGKHSHSLGNRPNNYIEFIIIGVSISIALLCRFI 85

[Close]

BLAST of Lcy13g005670 vs. ExPASy TrEMBL
Match: A0A6J1J9S2 (glycine-rich protein DOT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484806 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.0e-07
Identity = 57/157 (36.31%), Postives = 71/157 (45.22%), Query Frame = 0


Query: 1   MALILMLLYSSMVASFALREFFTTD-SKRQEFDHVEKYGKNGVFHHIGTIFNI------- 60
           MALILMLL+SSMVASFA ++ FTTD ++ QE +H EKYGKNGV   +  +  +       
Sbjct: 12  MALILMLLWSSMVASFAFKQLFTTDIAEFQESEHREKYGKNGVVIPMHIVIGLGGGGGSG 71

Query: 61  -----------------TTNSHESRPRGTGVIPIYAAGSS-------------------- 111
                                   R RG G       GS                     
Sbjct: 72  GGGRGGSGGGSSGGGRGGGGGSPGRGRGGGGGGSAGGGSGGGGGSTGGGSGGGGGSEGGG 131

[Close]

BLAST of Lcy13g005670 vs. ExPASy TrEMBL
Match: A0A0A0KUR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.9e-06
Identity = 52/145 (35.86%), Postives = 76/145 (52.41%), Query Frame = 0


Query: 3   LILMLLYSSM-VASFALREFF---TTDSKRQEFDHVEKYGKNGVFHHIG--------TIF 62
           LI +L  S++ ++S AL++      T+S  Q+  + +K+GK GV + I         T+ 
Sbjct: 9   LIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVS 68

Query: 63  NITT--------------------NSHESRPR---GTGVIPIYAAGSSA--HRRGN-HNA 110
           N+                       +  SRPR   GT VIP+YAAGS+   HR+G  HNA
Sbjct: 69  NVIRRGSGSGGGGGSGSAAAAGGGENGGSRPRTGGGTAVIPVYAAGSAQAHHRQGRAHNA 128

[Close]

BLAST of Lcy13g005670 vs. ExPASy TrEMBL
Match: A0A5A7SUI0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001940 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.6e-05
Identity = 51/138 (36.96%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 3   LILMLLYSSM-VASFALREFF---TTDSKRQEFDHVEKYGKNGVFHHIG--------TIF 62
           LI +L  S++ ++S AL++      T+S  Q+  +  K GK GV + I         T+ 
Sbjct: 8   LIFLLFCSTLAISSAALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSASAITVS 67

Query: 63  NIT-------------TNSHESRPR---GTGVIPIYAAGS--SAHRRGN-HNAGNYHKNF 110
           N+               N   SRP    GT VIP+YAAGS  + HR+G  HNAGN ++N 
Sbjct: 68  NVIRRANGGAAAAGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQGRPHNAGNGYENN 127

[Close]

BLAST of Lcy13g005670 vs. NCBI nr
Match: KGN52709.2 (hypothetical protein Csa_008507 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-09
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 1   MALILMLLYSSMVASFALREFFTTDSKRQEFDHVEKYGKNGVFHHIGTIFNITTNSHESR 60
           MA IL++L SSM+ASFA  + FT DSK+                HI    +  +   E R
Sbjct: 8   MAFILVILCSSMMASFAFTQLFTIDSKQ----------------HITVREHNNSRFVERR 67

Query: 61  PRGTGVIPIYAAGSSAHRRG--NHNAGNYHKNFMGFIVLGVSASIAYLCRVI 111
             G GVIPIY AG+S+ R G  +H+ GN   N++ FI++GVS SIA LCR I
Sbjct: 68  GGGRGVIPIYVAGASSGRHGKHSHSLGNRPNNYIEFIIIGVSISIALLCRFI 103

[Close]

BLAST of Lcy13g005670 vs. NCBI nr
Match: XP_023550250.1 (glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.9 bits (172), Expect = 8.0e-09
Identity = 55/135 (40.74%), Postives = 70/135 (51.85%), Query Frame = 0


Query: 1   MALILMLLYSSMVASFALREFFTTD-SKRQEFDHVEKYGKNGVFHHIGTIFNI------- 60
           MALILMLL SSMVASFA ++ FTTD ++ QE +H EKYGKNGV   +  +  +       
Sbjct: 1   MALILMLLCSSMVASFAFKQLFTTDIAEFQESEHREKYGKNGVVIPMRIVSRLGGGGGSG 60

Query: 61  ------------TTNSHESRPRGTGVIPIYAAGSSAHRRG-----NHNAGNYHKNFMGFI 111
                          S      G G  P   +G     RG     +   GN+H+N M FI
Sbjct: 61  GGGSGGGGRGGGGGGSSGGGSGGRGGSPGGGSGGGGGGRGGRGGAHSGTGNWHQNSMRFI 120

[Close]

BLAST of Lcy13g005670 vs. NCBI nr
Match: XP_008446753.1 (PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 8.8e-08
Identity = 50/121 (41.32%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 1   MALILMLLYSSMVASFALREFFTTDS-KRQEFDHVEKYGKNGVFHHIGTIFNITTNSHES 60
           +ALIL+L+YSSMV SFA ++ F TDS K QE +H+EK+G+          +NI     E 
Sbjct: 10  IALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRR---------YNI-----EG 69

Query: 61  RPRGTGVIPIY---------AAGSSAHRRGNHNAGNYH-KNFMGFIVLGVSASIAYLCRV 111
           R   T  IPI+           G    R G + AG  H +N+M FI   VS S+AYLC +
Sbjct: 70  RHGYTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGL 116

[Close]

BLAST of Lcy13g005670 vs. NCBI nr
Match: XP_038892711.1 (uncharacterized protein LOC120081693 [Benincasa hispida])

HSP 1 Score: 63.9 bits (154), Expect = 9.7e-07
Identity = 50/130 (38.46%), Postives = 69/130 (53.08%), Query Frame = 0


Query: 3   LILMLLYSSMVASFAL--REFFTTDSKRQEFDHVEKYGKNGVFHHIGTIFNIT------- 62
           LIL+LL S+M  S A   ++ F T+S  Q+  + EK  K+G+ + I   ++ T       
Sbjct: 9   LILLLLCSTMAISSAALQQQIFPTESNYQQKTYTEKRSKDGITNQIARRYSATEITVSNG 68

Query: 63  -----------TNSHESRPR---GTGVIPIYAAGSSA--HRRGN-HNAGNYHKNFMGFIV 107
                       N   SRP    GT VIP+YAAGS+   HR+G  HNAGN H+N  G +V
Sbjct: 69  IGQGSAVAGGGENGGGSRPHNGGGTAVIPVYAAGSAQAHHRQGRPHNAGNRHENNRGLLV 128

[Close]

BLAST of Lcy13g005670 vs. NCBI nr
Match: XP_022987217.1 (glycine-rich protein DOT1-like [Cucurbita maxima])

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-06
Identity = 57/157 (36.31%), Postives = 71/157 (45.22%), Query Frame = 0


Query: 1   MALILMLLYSSMVASFALREFFTTD-SKRQEFDHVEKYGKNGVFHHIGTIFNI------- 60
           MALILMLL+SSMVASFA ++ FTTD ++ QE +H EKYGKNGV   +  +  +       
Sbjct: 12  MALILMLLWSSMVASFAFKQLFTTDIAEFQESEHREKYGKNGVVIPMHIVIGLGGGGGSG 71

Query: 61  -----------------TTNSHESRPRGTGVIPIYAAGSS-------------------- 111
                                   R RG G       GS                     
Sbjct: 72  GGGRGGSGGGSSGGGRGGGGGSPGRGRGGGGGGSAGGGSGGGGGSTGGGSGGGGGSEGGG 131

The following BLAST results are available for this feature:

BLAST of Lcy13g005670 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g005670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BFU5	4.3e-08	41.32	transformer-2 protein homolog alpha-like OS=Cucumis melo OX=3656 GN=LOC103489385...	[more]
A0A0A0KTE6	4.7e-07	41.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613615 PE=4 SV=1	[more]
A0A6J1J9S2	8.0e-07	36.31	glycine-rich protein DOT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484806 PE=4 ...	[more]
A0A0A0KUR6	8.9e-06	35.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1	[more]
A0A5A7SUI0	2.6e-05	36.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy13g005670 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52709.2	2.7e-09	43.75	hypothetical protein Csa_008507 [Cucumis sativus]	[more]
XP_023550250.1	8.0e-09	40.74	glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_008446753.1	8.8e-08	41.32	PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo]	[more]
XP_038892711.1	9.7e-07	38.46	uncharacterized protein LOC120081693 [Benincasa hispida]	[more]
XP_022987217.1	1.7e-06	36.31	glycine-rich protein DOT1-like [Cucurbita maxima]	[more]

BLAST of Lcy13g005670 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g005670.1	Lcy13g005670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0004518	nuclease activity