Lcy13g005650 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g005650
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribonuclease
Location	Chr13: 4857481 .. 4858450 (+)
RNA-Seq Expression	Lcy13g005650
Synteny	Lcy13g005650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGAAATAGAGAGATGAAGAGAGATTTGCTACACTAGCGCAGTGAACAGAAATCAGCGACGTCTTCTCAAAAGCCATTCTCCAAATGCGCTTCGAGGCCTTGCGTAATGGATGAGCATCGATGAAGCTCGTCGAGGTCTTGTTTTATGTTTTGCATTTTCGTATTCGAATTTTCGCACCTCTCATTTCGTTTCGATCATCATATTTTGAGACATGGATTTGAGAACCTCTTCCTTTTTCGACGTTGATTGTAGTCGATCTTAGGGCCGATTGTGTATGGATTTTTGAAATAATGCGGCTGTTTCTATTTGAAATTGCTTTCGTCTTCGAAGGGGACGGTACAGAAACGCGGAAGTGGAGAGAGGACGAGCGGTTTGGTAGGTTTACGTAGTGAGTCGAAATCAGCAGTGTCTTTTCAACAGAAATGATCTTCGAAGCCTTGCGTGATGGGTTTGATCGGTGAAGCTGATCTAGGCTCTGTTTCACAATTTACTATTCGATTTAATTATACATTATCTCTGATTTCCTTCTGATCGTCGAAGTTTTGCTCATGAATTTGAGAATCTCTTTCTTTCTCAAATTTTACTCGATTCGATCTCAGGACCAATGGTGCATGGATGTTTGTACTGCGGTCGTTCCTATGTGAAAGCACTTTCGTCTTTGAATTTAGCAGGTTTATCAGGTACGCGAAATTTATGCTCCTACTGATTCCCTTCTAATTGTTTCTCATATCACATCATTGCTTGTTTAGTTTCATTTTCCTTAATTTTGACGTGCTTGCAGACTCAAAAACATTGAAAGAAGAGAAGATGGAGGAAATTTTTGACAATTTGAAGGCTAATGAATCAATTGGATGGGCTGTTGATATCTTAGATCCACGGGAGCTCTCATCCAAAACGCTAAATAAGTTAGTAGCTAGTAGTTTAGAAATTCTTTCATATTACCTACATACACTTTCATTTGCCTATTGA

mRNA sequence

CCGAAATAGAGAGATGAAGAGAGATTTGCTACACTAGCGCAGTGAACAGAAATCAGCGACGTCTTCTCAAAAGCCATTCTCCAAATGCGCTTCGAGGCCTTGCGTAATGGATGAGCATCGATGAAGCTCGTCGAGGACCAATGGTGCATGGATGTTTGTACTGCGGTCGTTCCTATGTGAAAGCACTTTCGTCTTTGAATTTAGCAGGTTTATCAGACTCAAAAACATTGAAAGAAGAGAAGATGGAGGAAATTTTTGACAATTTGAAGGCTAATGAATCAATTGGATGGGCTGTTGATATCTTAGATCCACGGGAGCTCTCATCCAAAACGCTAAATAAGTTAGTAGCTAGTAGTTTAGAAATTCTTTCATATTACCTACATACACTTTCATTTGCCTATTGA

Coding sequence (CDS)

ATGAGCATCGATGAAGCTCGTCGAGGACCAATGGTGCATGGATGTTTGTACTGCGGTCGTTCCTATGTGAAAGCACTTTCGTCTTTGAATTTAGCAGGTTTATCAGACTCAAAAACATTGAAAGAAGAGAAGATGGAGGAAATTTTTGACAATTTGAAGGCTAATGAATCAATTGGATGGGCTGTTGATATCTTAGATCCACGGGAGCTCTCATCCAAAACGCTAAATAAGTTAGTAGCTAGTAGTTTAGAAATTCTTTCATATTACCTACATACACTTTCATTTGCCTATTGA

Protein sequence

MSIDEARRGPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANESIGWAVDILDPRELSSKTLNKLVASSLEILSYYLHTLSFAY

Homology

[Close]

BLAST of Lcy13g005650 vs. ExPASy Swiss-Prot
Match: Q9SEZ6 (Ribonuclease H2 subunit A OS=Arabidopsis thaliana OX=3702 GN=At2g25100 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 3.5e-19
Identity = 48/81 (59.26%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
          M IDEA R    GPMV+GC+YC  SY  +L+SL+ A   DSKTLKEEK EE++++LK ++
Sbjct: 17 MGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFA---DSKTLKEEKREELYESLKLDK 76

Query: 61 SIGWAVDILDPRELSSKTLNK 78
          S+GWAVD++DPRELS+K L K
Sbjct: 77 SLGWAVDVIDPRELSAKMLAK 94

[Close]

BLAST of Lcy13g005650 vs. ExPASy Swiss-Prot
Match: O75792 (Ribonuclease H2 subunit A OS=Homo sapiens OX=9606 GN=RNASEH2A PE=1 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-07
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 1   MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
           + +DEA R    GPMV+   YC    +  L +L +A   DSKTL E + E +F  ++  +
Sbjct: 31  LGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVA---DSKTLLESERERLFAKMEDTD 90

Query: 61  SIGWAVDILDPRELSSKTLNKLVASSLEILSY 89
            +GWA+D+L P  +S+  L + V  +L  LS+
Sbjct: 91  FVGWALDVLSPNLISTSMLGR-VKYNLNSLSH 118

[Close]

BLAST of Lcy13g005650 vs. ExPASy Swiss-Prot
Match: Q9VPP5 (Ribonuclease H2 subunit A OS=Drosophila melanogaster OX=7227 GN=CG13690 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.8e-07
Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 1   MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
           + +DEA R    GPMV+G  YC     KAL  L   G +DSK L E K + IF+++   E
Sbjct: 73  LGVDEAGRGPVLGPMVYGISYCPLESNKALEDL---GCADSKQLTEGKRDIIFNDINTKE 132

Query: 61  ----SIGWAVDILDPRELSSKTLNKLVASSLEI 86
                +GWAV+I+ P  +S+    +   S  E+
Sbjct: 133 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEV 162

[Close]

BLAST of Lcy13g005650 vs. ExPASy Swiss-Prot
Match: B8FRK8 (Ribonuclease HII OS=Desulfitobacterium hafniense (strain DSM 10664 / DCB-2) OX=272564 GN=rnhB PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-04
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 3   IDEARRGPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANESIGWAV 62
           IDEA RGP+  G +      + A    NL GL+DSK L E K E++F  +K  ++IG+AV
Sbjct: 78  IDEAGRGPLA-GPVVAATCILPA--KFNLPGLNDSKKLTESKREKLFQQIK-EQAIGYAV 137

Query: 63  DILDPRELSSKTLNKLVASSL 84
              +P E+    LN L A+ L
Sbjct: 138 GSAEPAEIDG--LNILQATKL 152

[Close]

BLAST of Lcy13g005650 vs. ExPASy Swiss-Prot
Match: Q24UB4 (Ribonuclease HII OS=Desulfitobacterium hafniense (strain Y51) OX=138119 GN=rnhB PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-04
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 3   IDEARRGPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANESIGWAV 62
           IDEA RGP+  G +      + A    NL GL+DSK L E K E++F  +K  ++IG+AV
Sbjct: 78  IDEAGRGPLA-GPVVAATCILPA--KFNLPGLNDSKKLTESKREKLFQQIK-EQAIGYAV 137

Query: 63  DILDPRELSSKTLNKLVASSL 84
              +P E+    LN L A+ L
Sbjct: 138 GSAEPAEIDG--LNILQATKL 152

[Close]

BLAST of Lcy13g005650 vs. ExPASy TrEMBL
Match: A0A6J1IPY0 (Ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111479443 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.4e-23
Identity = 62/89 (69.66%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1   MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
           M IDEA R    GPMV+GCLYC RSY+K LSSLN A   DSKTLKEEK EE+F+ LKANE
Sbjct: 17  MGIDEAGRGPVLGPMVYGCLYCTRSYLKELSSLNFA---DSKTLKEEKREELFEGLKANE 76

Query: 61  SIGWAVDILDPRELSSKTLNKLVASSLEI 86
           SIGWAVD++DPRELSSK LNK+  +  EI
Sbjct: 77  SIGWAVDVIDPRELSSKMLNKVKINLNEI 102

[Close]

BLAST of Lcy13g005650 vs. ExPASy TrEMBL
Match: A0A5A7TT92 (Ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001310 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1   MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
           M IDEA R    GPMV+GCLYC  SY+K LSSLN A   DSKTLKEEK EE+F++LKANE
Sbjct: 17  MGIDEAGRGPVLGPMVYGCLYCASSYLKELSSLNFA---DSKTLKEEKREELFEDLKANE 76

Query: 61  SIGWAVDILDPRELSSKTLNKLVASSLEI 86
           SIGWAVD++DPRELSSK LNK+  +  EI
Sbjct: 77  SIGWAVDVIDPRELSSKMLNKVKINLNEI 102

[Close]

BLAST of Lcy13g005650 vs. ExPASy TrEMBL
Match: A0A0A0KTZ4 (Ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G015800 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1   MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
           M IDEA R    GPMV+GCLYC  SY+K LSSLN A   DSKTLKEEK EE+F++LKANE
Sbjct: 17  MGIDEAGRGPVLGPMVYGCLYCASSYLKQLSSLNFA---DSKTLKEEKREELFEDLKANE 76

Query: 61  SIGWAVDILDPRELSSKTLNKLVASSLEI 86
           SIGWAVD++DPRELSSK LNK+  +  EI
Sbjct: 77  SIGWAVDVIDPRELSSKMLNKVKINLNEI 102

[Close]

BLAST of Lcy13g005650 vs. ExPASy TrEMBL
Match: A0A1S3BXP1 (Ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494542 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1   MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
           M IDEA R    GPMV+GCLYC  SY+K LSSLN A   DSKTLKEEK EE+F++LKANE
Sbjct: 17  MGIDEAGRGPVLGPMVYGCLYCASSYLKELSSLNFA---DSKTLKEEKREELFEDLKANE 76

Query: 61  SIGWAVDILDPRELSSKTLNKLVASSLEI 86
           SIGWAVD++DPRELSSK LNK+  +  EI
Sbjct: 77  SIGWAVDVIDPRELSSKMLNKVKINLNEI 102

[Close]

BLAST of Lcy13g005650 vs. ExPASy TrEMBL
Match: A0A059BHP0 (Ribonuclease OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02689 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 1   MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
           M IDEA R    GPMV+GCLYC RSY K LS+LN A   DSKTLKEEK EE+F+NLKANE
Sbjct: 185 MGIDEAGRGPVLGPMVYGCLYCARSYQKTLSTLNFA---DSKTLKEEKREELFENLKANE 244

Query: 61  SIGWAVDILDPRELSSKTLNK 78
           SIGWAVD++DPRELSSK L K
Sbjct: 245 SIGWAVDVIDPRELSSKMLRK 262

[Close]

BLAST of Lcy13g005650 vs. NCBI nr
Match: XP_022979887.1 (ribonuclease H2 subunit A [Cucurbita maxima])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 62/89 (69.66%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1   MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
           M IDEA R    GPMV+GCLYC RSY+K LSSLN A   DSKTLKEEK EE+F+ LKANE
Sbjct: 17  MGIDEAGRGPVLGPMVYGCLYCTRSYLKELSSLNFA---DSKTLKEEKREELFEGLKANE 76

Query: 61  SIGWAVDILDPRELSSKTLNKLVASSLEI 86
           SIGWAVD++DPRELSSK LNK+  +  EI
Sbjct: 77  SIGWAVDVIDPRELSSKMLNKVKINLNEI 102

[Close]

BLAST of Lcy13g005650 vs. NCBI nr
Match: XP_023527419.1 (ribonuclease H2 subunit A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 62/89 (69.66%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1   MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
           M IDEA R    GPMV+GCLYC RSY+K LSSLN A   DSKTLKEEK EE+F+ LKANE
Sbjct: 17  MGIDEAGRGPVLGPMVYGCLYCTRSYLKELSSLNFA---DSKTLKEEKREELFEGLKANE 76

Query: 61  SIGWAVDILDPRELSSKTLNKLVASSLEI 86
           SIGWAVD++DPRELSSK LNK+  +  EI
Sbjct: 77  SIGWAVDVIDPRELSSKMLNKVKINLNEI 102

[Close]

BLAST of Lcy13g005650 vs. NCBI nr
Match: XP_008453982.1 (PREDICTED: ribonuclease H2 subunit A isoform X1 [Cucumis melo] >KAA0044595.1 ribonuclease H2 subunit A isoform X1 [Cucumis melo var. makuwa] >TYK16989.1 ribonuclease H2 subunit A isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 2.5e-22
Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1   MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
           M IDEA R    GPMV+GCLYC  SY+K LSSLN A   DSKTLKEEK EE+F++LKANE
Sbjct: 17  MGIDEAGRGPVLGPMVYGCLYCASSYLKELSSLNFA---DSKTLKEEKREELFEDLKANE 76

Query: 61  SIGWAVDILDPRELSSKTLNKLVASSLEI 86
           SIGWAVD++DPRELSSK LNK+  +  EI
Sbjct: 77  SIGWAVDVIDPRELSSKMLNKVKINLNEI 102

[Close]

BLAST of Lcy13g005650 vs. NCBI nr
Match: XP_038902264.1 (ribonuclease H2 subunit A [Benincasa hispida])

HSP 1 Score: 115.5 bits (288), Expect = 2.5e-22
Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1   MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
           M IDEA R    GPMV+GCLYC  SY+K LSSLN A   DSKTLKEEK EE+F++LKANE
Sbjct: 17  MGIDEAGRGPVLGPMVYGCLYCASSYLKELSSLNFA---DSKTLKEEKREELFEDLKANE 76

Query: 61  SIGWAVDILDPRELSSKTLNKLVASSLEI 86
           SIGWAVD++DPRELSSK LNK+  +  EI
Sbjct: 77  SIGWAVDVIDPRELSSKMLNKVKINLNEI 102

[Close]

BLAST of Lcy13g005650 vs. NCBI nr
Match: XP_004152096.1 (ribonuclease H2 subunit A [Cucumis sativus] >KGN53090.1 hypothetical protein Csa_014407 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 2.5e-22
Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1   MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
           M IDEA R    GPMV+GCLYC  SY+K LSSLN A   DSKTLKEEK EE+F++LKANE
Sbjct: 17  MGIDEAGRGPVLGPMVYGCLYCASSYLKQLSSLNFA---DSKTLKEEKREELFEDLKANE 76

Query: 61  SIGWAVDILDPRELSSKTLNKLVASSLEI 86
           SIGWAVD++DPRELSSK LNK+  +  EI
Sbjct: 77  SIGWAVDVIDPRELSSKMLNKVKINLNEI 102

[Close]

BLAST of Lcy13g005650 vs. TAIR 10
Match: AT2G25100.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-21
Identity = 51/97 (52.58%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 1   MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
           M IDEA R    GPMV+GC+YC  SY  +L+SL+ A   DSKTLKEEK EE++++LK ++
Sbjct: 17  MGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFA---DSKTLKEEKREELYESLKLDK 76

Query: 61  SIGWAVDILDPRELSSKTLNKLVASSLEILSYYLHTL 94
           S+GWAVD++DPRELS+K L K++   + +   YL T+
Sbjct: 77  SLGWAVDVIDPRELSAKMLAKVLDMGVLLTEAYLDTV 110

[Close]

BLAST of Lcy13g005650 vs. TAIR 10
Match: AT2G25100.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-20
Identity = 48/81 (59.26%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MSIDEARR----GPMVHGCLYCGRSYVKALSSLNLAGLSDSKTLKEEKMEEIFDNLKANE 60
          M IDEA R    GPMV+GC+YC  SY  +L+SL+ A   DSKTLKEEK EE++++LK ++
Sbjct: 17 MGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFA---DSKTLKEEKREELYESLKLDK 76

Query: 61 SIGWAVDILDPRELSSKTLNK 78
          S+GWAVD++DPRELS+K L K
Sbjct: 77 SLGWAVDVIDPRELSAKMLAK 94

The following BLAST results are available for this feature:

BLAST of Lcy13g005650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEZ6	3.5e-19	59.26	Ribonuclease H2 subunit A OS=Arabidopsis thaliana OX=3702 GN=At2g25100 PE=2 SV=2	[more]
O75792	4.0e-07	35.87	Ribonuclease H2 subunit A OS=Homo sapiens OX=9606 GN=RNASEH2A PE=1 SV=2	[more]
Q9VPP5	6.8e-07	36.56	Ribonuclease H2 subunit A OS=Drosophila melanogaster OX=7227 GN=CG13690 PE=2 SV=...	[more]
B8FRK8	1.4e-04	40.74	Ribonuclease HII OS=Desulfitobacterium hafniense (strain DSM 10664 / DCB-2) OX=2...	[more]
Q24UB4	1.4e-04	40.74	Ribonuclease HII OS=Desulfitobacterium hafniense (strain Y51) OX=138119 GN=rnhB ...	[more]

BLAST of Lcy13g005650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPY0	5.4e-23	69.66	Ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111479443 PE=3 SV=1	[more]
A0A5A7TT92	1.2e-22	68.54	Ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001310 ...	[more]
A0A0A0KTZ4	1.2e-22	68.54	Ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G015800 PE=3 SV=1	[more]
A0A1S3BXP1	1.2e-22	68.54	Ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494542 PE=3 SV=1	[more]
A0A059BHP0	2.1e-22	72.84	Ribonuclease OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02689 PE=3 SV=1	[more]

BLAST of Lcy13g005650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022979887.1	1.1e-22	69.66	ribonuclease H2 subunit A [Cucurbita maxima]	[more]
XP_023527419.1	1.1e-22	69.66	ribonuclease H2 subunit A [Cucurbita pepo subsp. pepo]	[more]
XP_008453982.1	2.5e-22	68.54	PREDICTED: ribonuclease H2 subunit A isoform X1 [Cucumis melo] >KAA0044595.1 rib...	[more]
XP_038902264.1	2.5e-22	68.54	ribonuclease H2 subunit A [Benincasa hispida]	[more]
XP_004152096.1	2.5e-22	68.54	ribonuclease H2 subunit A [Cucumis sativus] >KGN53090.1 hypothetical protein Csa...	[more]

BLAST of Lcy13g005650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25100.2	2.2e-21	52.58	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G25100.1	2.5e-20	59.26	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024567	Ribonuclease HII/HIII domain	PFAM	PF01351	RNase_HII	coord: 3..72 e-value: 3.6E-7 score: 30.2
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..93 e-value: 3.3E-14 score: 54.9
IPR001352	Ribonuclease HII/HIII	PANTHER	PTHR10954	RIBONUCLEASE H2 SUBUNIT A	coord: 1..80
None	No IPR available	PANTHER	PTHR10954:SF19	RIBONUCLEASE	coord: 1..80
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g005650.1	Lcy13g005650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043137	DNA replication, removal of RNA primer
biological_process	GO:0006298	mismatch repair
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0032299	ribonuclease H2 complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0003676	nucleic acid binding