Lcy13g004860 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g004860
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr13: 4191946 .. 4194550 (+)
RNA-Seq ExpressionLcy13g004860
SyntenyLcy13g004860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGACCGGGTGGCCGTCTCGGTGGCATTTCAGCGCGAATCCCGGGTACCCACAGAAGGATTCTTGGCGATTATGAATGTAAAATGGGTACTGAATTGTCTGGTTGTCGCCGCAGGACGCCGGGCGCCGGCAGGCCTCGAAGTGGAAGTCAACGTCGGCGGCGGCGGAGATGGTGGGCGTTTCCGGCGACAGAAAAATGAGAATGAAAATGAAGATGGAGAGATTGAACACCATCTGGGTTGGAAGATGAGATAAGATTTTGAGAGAAACAGAGAGAAAGGTGTTGTTTTGAGATTGAGTTTTAATTATTGGGTGTGAATTTGAAGAAGTTTTCGGGTGCTGAGTCTAAATTAAATGAATTTTCTGTATGTGTGCCTCATATATCATAGACCGTTGAATTGGATTTTATCTTCAAAGCCATATTCAAAGGTTTTGAGTTTGACACTTGACCTTGCATGTGTTTCAAATAGCAAGTTGGATCTAAAGTTTTTTTCTTGGCCCTTTTTGAAATTGGGTGTCTACGGGAGATCGTTTTCAATCAAGGGTAAAAGGGATTGGTTTCGATCCTTGAATTTACCATTTACTAATGAAATTGACCACCAAATTGATCCATTTTTATCTAGATTGACTCGGGTCCAGGTTGTAATTGTTGTACTTTGTAATATGAAATAAATTCATAGATGTCAAAGTGTTCAGCGGTAATTGACATGTACTCTTGACTAAAAGATCAGATGTTCGAAACTCCCCTCCCCAAATGTTGTTGAATTCAAAAAAAATAAACATATAAAATAAATTTAAATTTCTTGAACAATGAAATTGAAAATTGGTTAAAAACGAATCTCTAATTCCAGATGAATCTAATCTTAAAAGATAGTAGAGAAATAGATTATGTGAATGAACATGTTTTAAAAGTGAGATTTTAATAAATTCACAAAAAAAAAAAAAAGGAAAAATTTCTCTCACAATCATTTTTGCTCTATTAGAATCAATCTCAAACCTCAATTCTTTTGAATTTTCAATATGAATCTTTATTTTTAATGGGGGGAAAATGGGCAGCGTAAATATTTCAAGAAAAAAGGAACTTTCTCGTATTGTAGGTGTTTTTAAATTGCTTTGTGATGAGGGGGTTTAGGGTCCGTTTGGAATACATTTTAATTTAAATGTTTTTCAAGAATGCATTTTTTAAAAAACATTTTGTATAAAAATTATTTAGAATTTAAACACTCATATGTTTGGTTGCATTCCCTCACAAATGTTTTTATACACAAGTTATTGTTTACTTAAGAAGTCTTTCCTAAAAAGTTGACTAAGTGTTTCTCTCAAAATGGTTTATTTATCAATCTCATTTTCTAATAAGTCATTTTTAATGGTTGTCAAACACTAGAAATTTTTTGAAAATGATTTATTTTCAAAATTAAACACTTGAAAAGTTAAACCAAACATACCCTTAATTTCAAGGAATGATGAAAATATTTTAGGTAAATAAGAAGTTGAATTTATCTCTAAACTTTTTATTGACCAATGCTACTCTATTTTCCAAACCCATGTTAAAATTTGCATTGAAATTAAATTTTATATTAATGTGGCCCCTTGATATGACTTAACAATATAATCTATATATTTATGGTCTAAGTCAAGATTTAATTTTTCTTCGATCGTAGCGTAGCTAGAAAAATAAAAAAGAAAACAAAACGAAATGATTATAAGAAATTAGTGTGCAAAATAGTCTTGAAACTTTATATCAAAAACAGCCGTTTAAACTACAACTACCCACTTCTTATATTCAGTGGTCAGGTCACAAGGCGTGCCAGAACTCTTGCACCCACAACCAAACCAAAAAGGAACTTAGCTTGCCCAATTTGACCGATTATATTTATTTATTTATTTATTTTTATTATTATTATTTTGCAATCTTCTAAAAATTTAAATCTTCAAACCACATTACAAATATATACACACACATATAATTTTGCAAACTTGCTTTATTTTATCATATATGAAAAAAAACATATTATCAATTGGGTCGGTTAACTATTAAACAACAATAACACACAAGAACCTTCAACAGGGAGGTGTTGGCGGGATAATCTGTGACTCCGTAGGGTCCCTAGTTTGTGCGGTTATAGGAAAATCAGTAAAGAGTGGCCAATCAAAGCCCTAGAGGCCCTTGCAATTTTTAGAAGGGCTGAAAGCGTACCTGAAGCTGAAGGAAGTAGTTGAAGATCCTTCCACATTTCCTCCCATCTGGGTGGAGTCAGATGTCGCCAAAGCCATCAAATGCATTAATCAGGAGAGCGACGACATTACTGAATCTAGAATTTTCCTAGCTGAAGCAGTCGATCTTGGTCGTAAAGCAGGGGCAATGGTTGTCTCCTTCTGCCTGAGAGTTTGCAACTGGGTGGTGCACACCATTGCTCGATCTGCTGTCTCATCCCCTGCCATTGATTTTGTAGATCAATCGTCTCAAGCCACTATGGTGCAGTCTCCATCTTCTTCTCCCAAAGATGTCGTTTTCTGGAGGGATTTTGTTGTACCTAACTGGCTATCCTCTTCTACTATAAATGAGGATTTTTGTATACCTACCTTCGTTTCTTCTAATTAA

mRNA sequence

ATGGAGGACCGGGTGGCCGTCTCGGTGGCATTTCAGCGCGAATCCCGGGTACCCACAGAAGGATTCTTGGCGATTATGAATGTAAAATGGGTACTGAATTGTCTGGTTGTCGCCGCAGGACGCCGGGCGCCGGCAGGCCTCGAAGTGGAAGTCAACGTCGGCGGCGGCGGAGATGGTGGGCGTTTCCGGCGACAGAAAAATGAGAATGAAAATGAAGATGGAGAGATTGAACACCATCTGGAAGGGCTGAAAGCGTACCTGAAGCTGAAGGAAGTAGTTGAAGATCCTTCCACATTTCCTCCCATCTGGGTGGAGTCAGATGTCGCCAAAGCCATCAAATGCATTAATCAGGAGAGCGACGACATTACTGAATCTAGAATTTTCCTAGCTGAAGCAGTCGATCTTGGTCGTAAAGCAGGGGCAATGGTTGTCTCCTTCTGCCTGAGAGTTTGCAACTGGGTGGTGCACACCATTGCTCGATCTGCTGTCTCATCCCCTGCCATTGATTTTGTAGATCAATCGTCTCAAGCCACTATGGTGCAGTCTCCATCTTCTTCTCCCAAAGATGTCGTTTTCTGGAGGGATTTTGTTGTACCTAACTGGCTATCCTCTTCTACTATAAATGAGGATTTTTGTATACCTACCTTCGTTTCTTCTAATTAA

Coding sequence (CDS)

ATGGAGGACCGGGTGGCCGTCTCGGTGGCATTTCAGCGCGAATCCCGGGTACCCACAGAAGGATTCTTGGCGATTATGAATGTAAAATGGGTACTGAATTGTCTGGTTGTCGCCGCAGGACGCCGGGCGCCGGCAGGCCTCGAAGTGGAAGTCAACGTCGGCGGCGGCGGAGATGGTGGGCGTTTCCGGCGACAGAAAAATGAGAATGAAAATGAAGATGGAGAGATTGAACACCATCTGGAAGGGCTGAAAGCGTACCTGAAGCTGAAGGAAGTAGTTGAAGATCCTTCCACATTTCCTCCCATCTGGGTGGAGTCAGATGTCGCCAAAGCCATCAAATGCATTAATCAGGAGAGCGACGACATTACTGAATCTAGAATTTTCCTAGCTGAAGCAGTCGATCTTGGTCGTAAAGCAGGGGCAATGGTTGTCTCCTTCTGCCTGAGAGTTTGCAACTGGGTGGTGCACACCATTGCTCGATCTGCTGTCTCATCCCCTGCCATTGATTTTGTAGATCAATCGTCTCAAGCCACTATGGTGCAGTCTCCATCTTCTTCTCCCAAAGATGTCGTTTTCTGGAGGGATTTTGTTGTACCTAACTGGCTATCCTCTTCTACTATAAATGAGGATTTTTGTATACCTACCTTCGTTTCTTCTAATTAA

Protein sequence

MEDRVAVSVAFQRESRVPTEGFLAIMNVKWVLNCLVVAAGRRAPAGLEVEVNVGGGGDGGRFRRQKNENENEDGEIEHHLEGLKAYLKLKEVVEDPSTFPPIWVESDVAKAIKCINQESDDITESRIFLAEAVDLGRKAGAMVVSFCLRVCNWVVHTIARSAVSSPAIDFVDQSSQATMVQSPSSSPKDVVFWRDFVVPNWLSSSTINEDFCIPTFVSSN
Homology
The following BLAST results are available for this feature:
BLAST of Lcy13g004860 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g004860 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g004860 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g004860 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 98..162
e-value: 1.0E-4
score: 22.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g004860.1Lcy13g004860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity