Lcy13g004530 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g004530
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein NIM1-INTERACTING 2
Location	Chr13: 3897471 .. 3898362 (-)
RNA-Seq Expression	Lcy13g004530
Synteny	Lcy13g004530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGTGAAAATATTTTCTTATATTTTTGGTATTTTCAAAATAATTTAAATTCCACTGATTATAAATTTTTGTCAAGAAATAACTGCACCCACACATAAAAAGCCTGAAAAACAGATTCTCTTCACTGACCACTTACGAAACGATGCCGTTTGAGTTGTTTCCGGCCTGTCGGAGCACGGACAGAGGCAAAAGAAAGCGGGGAGACGACGCCGATCACGATACCGCCGGCGCCGGCGCCGGAAACCAGAAGGATTTGGTGGCAGATGGGGGAAAAGAGGCGGAAACGGCGACAGATGAAGAGGTGGAGGAGTTTATCGCCATTCTCAAGCGATTACACTGGGCGACCAAATACATAGAGAAGATCGACGGTGCGAGCCGTCTGTTGATGGGAAAGAGATCGAAGCCGACGAAGTCGAGCGAGGAAGAAGCCGATGAAGCTGAAATTAGGGAAGAGAGAATTCCAGAGCACAAATTGGACAGAAATTTGGATCTGGATCTGAACCTAGAACCTGCGTCCGTTGAACCGGATGGTAAAGAGAGGAGAAGCCGGAGCCAGAATCCGAAGCCGTCGTCCGGCAATTCGGCCGCCGATTCTCGTCGGAATTACAAATTGCCGGCACGTTAAATTTGGCCGTACCTGGAAGTAATCGACGGCTCCGATCATCCGAGCGGATGAACTGATATTCGAGCCTCGTGGTTGCGGATCCGGGTAAGACCGACCGATCCAGATTTTTTTTTTTCCTTCCTTTTCTTTTTAATGTATCAAAACAAAAACTATGGATCGATCGTCGATGATTAGAAATCGGATGTTATTTTAATTAGTGGATTCGTCGAAAGAATGTGAGAATATTGGTTTTGATCATCTGATGTAGCTGGAAAATTTGGATCCCC

mRNA sequence

TTGGGTGAAAATATTTTCTTATATTTTTGGTATTTTCAAAATAATTTAAATTCCACTGATTATAAATTTTTGTCAAGAAATAACTGCACCCACACATAAAAAGCCTGAAAAACAGATTCTCTTCACTGACCACTTACGAAACGATGCCGTTTGAGTTGTTTCCGGCCTGTCGGAGCACGGACAGAGGCAAAAGAAAGCGGGGAGACGACGCCGATCACGATACCGCCGGCGCCGGCGCCGGAAACCAGAAGGATTTGGTGGCAGATGGGGGAAAAGAGGCGGAAACGGCGACAGATGAAGAGGTGGAGGAGTTTATCGCCATTCTCAAGCGATTACACTGGGCGACCAAATACATAGAGAAGATCGACGGTGCGAGCCGTCTGTTGATGGGAAAGAGATCGAAGCCGACGAAGTCGAGCGAGGAAGAAGCCGATGAAGCTGAAATTAGGGAAGAGAGAATTCCAGAGCACAAATTGGACAGAAATTTGGATCTGGATCTGAACCTAGAACCTGCGTCCGTTGAACCGGATGGTAAAGAGAGGAGAAGCCGGAGCCAGAATCCGAAGCCGTCGTCCGGCAATTCGGCCGCCGATTCTCGTCGGAATTACAAATTGCCGGCACGTTAAATTTGGCCGTACCTGGAAGTAATCGACGGCTCCGATCATCCGAGCGGATGAACTGATATTCGAGCCTCGTGGTTGCGGATCCGGGTAAGACCGACCGATCCAGATTTTTTTTTTTCCTTCCTTTTCTTTTTAATGTATCAAAACAAAAACTATGGATCGATCGTCGATGATTAGAAATCGGATGTTATTTTAATTAGTGGATTCGTCGAAAGAATGTGAGAATATTGGTTTTGATCATCTGATGTAGCTGGAAAATTTGGATCCCC

Coding sequence (CDS)

ATGCCGTTTGAGTTGTTTCCGGCCTGTCGGAGCACGGACAGAGGCAAAAGAAAGCGGGGAGACGACGCCGATCACGATACCGCCGGCGCCGGCGCCGGAAACCAGAAGGATTTGGTGGCAGATGGGGGAAAAGAGGCGGAAACGGCGACAGATGAAGAGGTGGAGGAGTTTATCGCCATTCTCAAGCGATTACACTGGGCGACCAAATACATAGAGAAGATCGACGGTGCGAGCCGTCTGTTGATGGGAAAGAGATCGAAGCCGACGAAGTCGAGCGAGGAAGAAGCCGATGAAGCTGAAATTAGGGAAGAGAGAATTCCAGAGCACAAATTGGACAGAAATTTGGATCTGGATCTGAACCTAGAACCTGCGTCCGTTGAACCGGATGGTAAAGAGAGGAGAAGCCGGAGCCAGAATCCGAAGCCGTCGTCCGGCAATTCGGCCGCCGATTCTCGTCGGAATTACAAATTGCCGGCACGTTAA

Protein sequence

MPFELFPACRSTDRGKRKRGDDADHDTAGAGAGNQKDLVADGGKEAETATDEEVEEFIAILKRLHWATKYIEKIDGASRLLMGKRSKPTKSSEEEADEAEIREERIPEHKLDRNLDLDLNLEPASVEPDGKERRSRSQNPKPSSGNSAADSRRNYKLPAR

Homology

[Close]

BLAST of Lcy13g004530 vs. ExPASy TrEMBL
Match: A0A5A7SZN6 (Protein NIM1-INTERACTING 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00930 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.8e-45
Identity = 114/153 (74.51%), Postives = 120/153 (78.43%), Query Frame = 0


Query: 1   MPFELFPACRSTDRGKRKRGDDADHDTAGAGAGNQKDLVADGGKEAETATDEEVEEFIAI 60
           MPFELFP  RSTDRGKRKRGDD       AGAGNQKD+V   GKEAETATDEEVEEF +I
Sbjct: 1   MPFELFPGSRSTDRGKRKRGDD-------AGAGNQKDVVTKEGKEAETATDEEVEEFFSI 60

Query: 61  LKRLHWATKYIEKIDGASRLLMGKRSKPTKSSEEEADEAEIREERIPEHKLDRNLDLDLN 120
           LKRLH ATKYIEKIDGAS LLMGKRSK  KS+EEE DE  IR ERIPE KLDRNLDLDLN
Sbjct: 61  LKRLHAATKYIEKIDGASHLLMGKRSKRMKSNEEERDEVGIRVERIPEQKLDRNLDLDLN 120

Query: 121 LEPASVEPDGKERRSRSQNPKPSSGNSAADSRR 154
           LEP  VE +GK R  +SQN KPS  +SAA S R
Sbjct: 121 LEPVCVESEGKSR--QSQNLKPSCVDSAAVSCR 144

[Close]

BLAST of Lcy13g004530 vs. ExPASy TrEMBL
Match: A0A0A0KT67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609110 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.8e-45
Identity = 111/153 (72.55%), Postives = 120/153 (78.43%), Query Frame = 0


Query: 1   MPFELFPACRSTDRGKRKRGDDADHDTAGAGAGNQKDLVADGGKEAETATDEEVEEFIAI 60
           MPFELFPA RST+RGKRKRGDD       AG GNQKD+ A+ G+EAETATDEEVEEF +I
Sbjct: 1   MPFELFPASRSTERGKRKRGDD-------AGVGNQKDVGAEEGREAETATDEEVEEFFSI 60

Query: 61  LKRLHWATKYIEKIDGASRLLMGKRSKPTKSSEEEADEAEIREERIPEHKLDRNLDLDLN 120
           LKRLH ATKYIEKIDGAS LLMGKR KP KS+EEE DE  I+ ERIPE KLDRNLDLDLN
Sbjct: 61  LKRLHAATKYIEKIDGASHLLMGKRPKPMKSNEEEGDEVGIKAERIPEQKLDRNLDLDLN 120

Query: 121 LEPASVEPDGKERRSRSQNPKPSSGNSAADSRR 154
           LEP  VE +GK R    QN KPS  +SAADS R
Sbjct: 121 LEPVCVESEGKSR--ERQNRKPSCVDSAADSCR 144

[Close]

BLAST of Lcy13g004530 vs. ExPASy TrEMBL
Match: A0A1S3BFE7 (protein NIM1-INTERACTING 2 OS=Cucumis melo OX=3656 GN=LOC103489277 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.8e-45
Identity = 114/153 (74.51%), Postives = 120/153 (78.43%), Query Frame = 0


Query: 1   MPFELFPACRSTDRGKRKRGDDADHDTAGAGAGNQKDLVADGGKEAETATDEEVEEFIAI 60
           MPFELFP  RSTDRGKRKRGDD       AGAGNQKD+V   GKEAETATDEEVEEF +I
Sbjct: 1   MPFELFPGSRSTDRGKRKRGDD-------AGAGNQKDVVTKEGKEAETATDEEVEEFFSI 60

Query: 61  LKRLHWATKYIEKIDGASRLLMGKRSKPTKSSEEEADEAEIREERIPEHKLDRNLDLDLN 120
           LKRLH ATKYIEKIDGAS LLMGKRSK  KS+EEE DE  IR ERIPE KLDRNLDLDLN
Sbjct: 61  LKRLHAATKYIEKIDGASHLLMGKRSKRMKSNEEERDEVGIRVERIPEQKLDRNLDLDLN 120

Query: 121 LEPASVEPDGKERRSRSQNPKPSSGNSAADSRR 154
           LEP  VE +GK R  +SQN KPS  +SAA S R
Sbjct: 121 LEPVCVESEGKSR--QSQNLKPSCVDSAAVSCR 144

[Close]

BLAST of Lcy13g004530 vs. ExPASy TrEMBL
Match: A0A6J1FZ89 (uncharacterized protein LOC111449260 OS=Cucurbita moschata OX=3662 GN=LOC111449260 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.7e-42
Identity = 111/157 (70.70%), Postives = 124/157 (78.98%), Query Frame = 0


Query: 1   MPFELFPACRSTDRGKRK--RGDDADHDTAGAGAGNQKDLVADGGKEAETATDEEVEEFI 60
           MPFELFP+ R TDRGKRK  RG+ AD+D A A AGNQK+ VA+ G E +  +DEEVEEF 
Sbjct: 1   MPFELFPSSR-TDRGKRKRERGEHADYD-AAAAAGNQKETVAERGNERQMTSDEEVEEFF 60

Query: 61  AILKRLHWATKYIEKIDGASRLLMGKRSKPTKSSEEEADEAEIREERIPEHKLDRN--LD 120
           AILKRLH ATKYIEKIDGA  LLMGKR+K  K+SE+E D  EIR +RIPE KLDRN  LD
Sbjct: 61  AILKRLHAATKYIEKIDGARSLLMGKRAKTAKASEKEGDGVEIRTKRIPEQKLDRNLDLD 120

Query: 121 LDLNLEPASVEPDGKERRSRSQNPKPSSGNSAADSRR 154
           LDLNLEPASVE DGKERRSRS N K  + +SAADSRR
Sbjct: 121 LDLNLEPASVESDGKERRSRSHNLKSLTDDSAADSRR 155

[Close]

BLAST of Lcy13g004530 vs. ExPASy TrEMBL
Match: A0A6J1HXL3 (uncharacterized protein LOC111467566 OS=Cucurbita maxima OX=3661 GN=LOC111467566 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.9e-34
Identity = 95/155 (61.29%), Postives = 109/155 (70.32%), Query Frame = 0


Query: 1   MPFELFPACRSTDRGKRK--RGDDADHDTAGAGAGNQKDLVADGGKEAETATDEEVEEFI 60
           MPFELFP+ R+ DRGKRK  RG+ AD++ A A AGNQK  VAD GKE E  +DEEVEEF 
Sbjct: 1   MPFELFPSSRA-DRGKRKRERGEHADYEAAAADAGNQKKTVADRGKEREMTSDEEVEEFF 60

Query: 61  AILKRLHWATKYIEKIDGASRLLMGKRSKPTKSSEEEADEAEIREERIPEHKLDRNLDLD 120
            ILKRLH ATKYIEKIDGA   LMGKR+K  K+SE+E D  EIR +RIPE KLDRNLDLD
Sbjct: 61  TILKRLHAATKYIEKIDGARSFLMGKRAKTAKASEKEGDGVEIRTKRIPEQKLDRNLDLD 120

Query: 121 LNLEPASVEPDGKERRSRSQNPKPSSGNSAADSRR 154
           L+L                 N +P+S +SAADSRR
Sbjct: 121 LDL-----------------NLEPASDDSAADSRR 137

[Close]

BLAST of Lcy13g004530 vs. NCBI nr
Match: XP_038892789.1 (protein NIM1-INTERACTING 2 [Benincasa hispida])

HSP 1 Score: 206.1 bits (523), Expect = 2.3e-49
Identity = 119/153 (77.78%), Postives = 127/153 (83.01%), Query Frame = 0


Query: 1   MPFELFPACRSTDRGKRKRGDDADHDTAGAGAGNQKDLVADGGKEAETATDEEVEEFIAI 60
           MPFELFPA RSTDRGKRKR DD       AG G+Q+D VAD GKEAETATDEEVEEF +I
Sbjct: 1   MPFELFPASRSTDRGKRKREDD-------AGTGSQRDAVADRGKEAETATDEEVEEFFSI 60

Query: 61  LKRLHWATKYIEKIDGASRLLMGKRSKPTKSSEEEADEAEIREERIPEHKLDRNLDLDLN 120
           LKRLH ATKYIEKIDGASRLLMGKRSKPTKSSEEEADE EIR E+IP+HKLDRNLDLDLN
Sbjct: 61  LKRLHAATKYIEKIDGASRLLMGKRSKPTKSSEEEADEVEIRAEKIPDHKLDRNLDLDLN 120

Query: 121 LEPASVEPDGKERRSRSQNPKPSSGNSAADSRR 154
           LEPA VE D  ++ SRSQN K S  +SAADS R
Sbjct: 121 LEPACVESD--DKTSRSQNLKTSCADSAADSCR 144

[Close]

BLAST of Lcy13g004530 vs. NCBI nr
Match: XP_008446591.1 (PREDICTED: protein NIM1-INTERACTING 2 [Cucumis melo] >KAA0034549.1 protein NIM1-INTERACTING 2 [Cucumis melo var. makuwa] >TYK09103.1 protein NIM1-INTERACTING 2 [Cucumis melo var. makuwa])

HSP 1 Score: 191.4 bits (485), Expect = 5.9e-45
Identity = 114/153 (74.51%), Postives = 120/153 (78.43%), Query Frame = 0


Query: 1   MPFELFPACRSTDRGKRKRGDDADHDTAGAGAGNQKDLVADGGKEAETATDEEVEEFIAI 60
           MPFELFP  RSTDRGKRKRGDD       AGAGNQKD+V   GKEAETATDEEVEEF +I
Sbjct: 1   MPFELFPGSRSTDRGKRKRGDD-------AGAGNQKDVVTKEGKEAETATDEEVEEFFSI 60

Query: 61  LKRLHWATKYIEKIDGASRLLMGKRSKPTKSSEEEADEAEIREERIPEHKLDRNLDLDLN 120
           LKRLH ATKYIEKIDGAS LLMGKRSK  KS+EEE DE  IR ERIPE KLDRNLDLDLN
Sbjct: 61  LKRLHAATKYIEKIDGASHLLMGKRSKRMKSNEEERDEVGIRVERIPEQKLDRNLDLDLN 120

Query: 121 LEPASVEPDGKERRSRSQNPKPSSGNSAADSRR 154
           LEP  VE +GK R  +SQN KPS  +SAA S R
Sbjct: 121 LEPVCVESEGKSR--QSQNLKPSCVDSAAVSCR 144

[Close]

BLAST of Lcy13g004530 vs. NCBI nr
Match: KGN52074.1 (hypothetical protein Csa_008594 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 5.9e-45
Identity = 111/153 (72.55%), Postives = 120/153 (78.43%), Query Frame = 0


Query: 1   MPFELFPACRSTDRGKRKRGDDADHDTAGAGAGNQKDLVADGGKEAETATDEEVEEFIAI 60
           MPFELFPA RST+RGKRKRGDD       AG GNQKD+ A+ G+EAETATDEEVEEF +I
Sbjct: 1   MPFELFPASRSTERGKRKRGDD-------AGVGNQKDVGAEEGREAETATDEEVEEFFSI 60

Query: 61  LKRLHWATKYIEKIDGASRLLMGKRSKPTKSSEEEADEAEIREERIPEHKLDRNLDLDLN 120
           LKRLH ATKYIEKIDGAS LLMGKR KP KS+EEE DE  I+ ERIPE KLDRNLDLDLN
Sbjct: 61  LKRLHAATKYIEKIDGASHLLMGKRPKPMKSNEEEGDEVGIKAERIPEQKLDRNLDLDLN 120

Query: 121 LEPASVEPDGKERRSRSQNPKPSSGNSAADSRR 154
           LEP  VE +GK R    QN KPS  +SAADS R
Sbjct: 121 LEPVCVESEGKSR--ERQNRKPSCVDSAADSCR 144

[Close]

BLAST of Lcy13g004530 vs. NCBI nr
Match: XP_023542001.1 (uncharacterized protein LOC111801981 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.4 bits (472), Expect = 1.9e-43
Identity = 110/155 (70.97%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 1   MPFELFPACRSTDRGKRK--RGDDADHDTAGAGAGNQKDLVADGGKEAETATDEEVEEFI 60
           MPFELFP+ R TDRGKRK  RG+ AD+D A A AGNQK+ VA+ G E E  +DEEVEEF 
Sbjct: 1   MPFELFPSSR-TDRGKRKRERGEHADYD-AAAAAGNQKETVAERGNEREMTSDEEVEEFF 60

Query: 61  AILKRLHWATKYIEKIDGASRLLMGKRSKPTKSSEEEADEAEIREERIPEHKLDRNLDLD 120
           AILKRLH ATKYIEKIDGA  LLMGKR+K  K+SE+E D  EIR +RIP+ KLDRNLDLD
Sbjct: 61  AILKRLHAATKYIEKIDGARSLLMGKRAKTAKASEKEGDGVEIRTKRIPDQKLDRNLDLD 120

Query: 121 LNLEPASVEPDGKERRSRSQNPKPSSGNSAADSRR 154
           LNLEP  VE DGKERRSRS N K  +G+SAADSRR
Sbjct: 121 LNLEPTCVESDGKERRSRSHNLKSLTGDSAADSRR 153

[Close]

BLAST of Lcy13g004530 vs. NCBI nr
Match: KAG6573971.1 (hypothetical protein SDJN03_27858, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013028.1 hypothetical protein SDJN02_25784, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-42
Identity = 112/157 (71.34%), Postives = 124/157 (78.98%), Query Frame = 0


Query: 1   MPFELFPACRSTDRGKRK--RGDDADHDTAGAGAGNQKDLVADGGKEAETATDEEVEEFI 60
           MPFELFP+ R TDRGKRK  RG+ AD+D A A AGNQK+ VA+ G E E  +DEEVEEF 
Sbjct: 1   MPFELFPSSR-TDRGKRKRERGEHADYD-AAAAAGNQKETVAERGNEREMTSDEEVEEFF 60

Query: 61  AILKRLHWATKYIEKIDGASRLLMGKRSKPTKSSEEEADEAEIREERIPEHKLDRN--LD 120
           AILKRLH ATKYIEKIDGA  LLMGKR+K  K+SE+E D  EIR +RIPE KLDRN  LD
Sbjct: 61  AILKRLHAATKYIEKIDGARSLLMGKRAKTAKASEKEGDGVEIRTKRIPEQKLDRNLDLD 120

Query: 121 LDLNLEPASVEPDGKERRSRSQNPKPSSGNSAADSRR 154
           LDLNLEPASVE DGKERRSRS N K  + +SAADSRR
Sbjct: 121 LDLNLEPASVESDGKERRSRSHNLKSLTDDSAADSRR 155

The following BLAST results are available for this feature:

BLAST of Lcy13g004530 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g004530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZN6	2.8e-45	74.51	Protein NIM1-INTERACTING 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A0A0KT67	2.8e-45	72.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609110 PE=4 SV=1	[more]
A0A1S3BFE7	2.8e-45	74.51	protein NIM1-INTERACTING 2 OS=Cucumis melo OX=3656 GN=LOC103489277 PE=4 SV=1	[more]
A0A6J1FZ89	1.7e-42	70.70	uncharacterized protein LOC111449260 OS=Cucurbita moschata OX=3662 GN=LOC1114492...	[more]
A0A6J1HXL3	3.9e-34	61.29	uncharacterized protein LOC111467566 OS=Cucurbita maxima OX=3661 GN=LOC111467566...	[more]

BLAST of Lcy13g004530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892789.1	2.3e-49	77.78	protein NIM1-INTERACTING 2 [Benincasa hispida]	[more]
XP_008446591.1	5.9e-45	74.51	PREDICTED: protein NIM1-INTERACTING 2 [Cucumis melo] >KAA0034549.1 protein NIM1-...	[more]
KGN52074.1	5.9e-45	72.55	hypothetical protein Csa_008594 [Cucumis sativus]	[more]
XP_023542001.1	1.9e-43	70.97	uncharacterized protein LOC111801981 [Cucurbita pepo subsp. pepo]	[more]
KAG6573971.1	1.6e-42	71.34	hypothetical protein SDJN03_27858, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy13g004530 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..26
None	No IPR available	PANTHER	PTHR35735:SF8	PROTEIN NIM1-INTERACTING 2	coord: 14..125
IPR034577	Protein NIM1-INTERACTING 2	PANTHER	PTHR35735	PROTEIN NIM1-INTERACTING 2	coord: 14..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g004530.1	Lcy13g004530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance