Lcy13g004470 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g004470
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionBAH domain-containing protein
LocationChr13: 3844802 .. 3847702 (-)
RNA-Seq ExpressionLcy13g004470
SyntenyLcy13g004470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAACAGAGGCGCTGAGGCTCATATCTCTTTGGGTGGAAATAGTCGATGGTATCCTCCGATTGAAGATTTCTGGAAGATGAATTCTGATGCTGCATGCTTCGAAGATCCCTTGATGACAAGTATTGAGATGATCTATAGAGATTTTGAGGGAAGATTATGGTTGCTGCTTCGTGTTATGGATATTAAGTTGGAGGCCCATTTGGCCGAATTATGGACCATTCTTGAATGTATCAGACTGGTTGTTTCTTTGGGTTGTTCCAAGCTTATTGTGGAATCTGATTGCCAAATTGCTATCAAGTTTATTAATAAGGAGATAGAAGCTTGGTCGGACTCTGAGGCCTTAGTAGCAACAATATGGATTTTTTTTTTTTTTTGCCTGTTTTCAGAGATATTTCCTTTAATTTTGTTCCAAGATCCTGTAATAGGATTGTCCATGAAATTGCAAGATATGGGAAATCTGTAAATAATCGTGAGGTTTGGGTTTCAAATTTTCCAAACTGGATGTGTATGTGGATCGAGTATGACCGTTCAATTTTTGCCTAAAAAAGAAAAGGATAAAATGAAAGAATTTGAACTTTAAAGTGAAAAAAACAAGCCAAAATTTAGAGATTGGGAGGGTTTTGTTTCCTTTCTACGAAAAATCTTATATTTTCTATATGAAAAATTATGATATCATAATTTGTTAATTTGATGTCATAATTTGTTGAAAACGGTTATTATAAGACGCCAAAATAGACCCTAAAATCCAAGAACTAAAAAATGGTTAAAAAAGAATACATGGGTGCAAATGTAACTTTCTTGTTTGTTGGTAGTGGAGCGCCCATGATTAATACCCCAATCCACATCTCTATTCATTAAAGCTTTAATTAGAAGCTAATTAAACAAATAAAAGGAAATGGTCGAGACGGCGCCGTATAGTCCTTGGAGCCGTTGGGAGCTTGGCGTGGGATCTGTCGCTTCCTTGTAGCAGCTTTCCCTTTATCCATGTGCAGTACGACGTCGTTATCTCCATCGGACAGACGGACACCATTTGCTTCGCGTAGAAAGGCGCGACCACAAAGTTGGAATGACAATTGGCGACTAGGAAGGTAAAAAACTTAAAAAAGATAAAGGAAAATCAAATAGTAAAAAGGACAATATTTTGTTTTTGACTTAAGAAAATTCTAACCTTTACTCTTTTGAAAGAATATATATGCCTTTAACCAATTCTCATGCTAAAGTTAACATTAAAAATGATGGTTACTTTACTACTGACATTTTGTCTCTGAATTTTGACGAATAATTATAGTCACTGTATATAAAATTTGTATCAATTTAGTTTCTAATAAATGTCATAATTCAGTAATTGTAGTTTAAACATTGCAACAATCTAATACTTGAAAATCCAATTACAATATAGGATGGATGAGAAAGGAAAAATTATAGCATCACTATGATACCTACATCTTCCATTCACCATTTGACACATTAATCAGCGATATATCACTTTATTTCATGAAACATAAATGACATCGTAATGACAAACATTGAAATGAGGTAGTATGAACTTTTTTTTTTCTATTATAATACTATAAATGTTCTCGAATACAGTCGTCCACTGTGCAGTTGAGCTCGCGATTTCTCCTTCTTTTCCGTTTTTGGTTAGCCAGGGCGATTCCTTTCGCGGGGATTTGGGTGTTTATTTTGGGCCCTTGGTATCCCTGATTTTTTAATCCCTCCGTTAATTGAGGGCAATTGTACTAGACCTTATTTTTCTTTGTGAAGTCTTCTGTTTTATTCAAAAAATAATAATAATAAATGTTTTCGAATAATAGATGTGGCAATTCGACTCTCGACTCCTCCTCTTCTACAGTCATCGATATAGATGTGAAATCTTTGGACCATTCAAATTGAAAGATTGGTTTTAAAGTCAAACTCTAGGCATAAACTTTTCACCATGTTAGTAGTGATTGTATATATTTAGCTGAAAAGTAGTGATTAAATTGTTACTTGTTTTAGGTCAAGTGTAAAAAATGGGAGTGTTTGGTCACACAAGCAACCTCGAAGGAATCATCCTTGCGAGGAAAAAAATGGGCAACTCTTTGCGGAAAGCAGCTGTCATTGTGAAACGAACCATCTTTGTCAACTCTTTATCATCATCCTTTCACTCTCACTGGCTTACCTCCTTTTACTTATCTCCCTTCCCCTTCTCCTTTTTCCCAACCACTTAAAAACTTTGCCAGATAAAATCTCCCTTTTCCCCACGCCCCTAGCCTACCCATTATGCTTCTTCTTCCCTCTTTCCTCGGCGGCGTTTGACCGGAGCATGGCGGAGCCGCCCAAAAAGAAGCCGCCGGGAATCGGAGTTCGGAAGCAGAAGATCTTTCCCCATGCTTCTAGCCTCGCCTCCATTGAATCCTTATCTCTCCCTCTTGTCTCTGCCTTTTCTCTCTTTCTCCAGCTTTCTTTTTTAATTTCGTGGCTGAAATTAACTCTTAATGGTTTTTTATTCTCCAGGTTCAGGAAATTGTGTTGACGGCTGATATTCGTTGTGCTGAATGCCAGAAGAAACTGGCGAATATTCTGTCCAAAATGAACGGTGAGTTTAATTTCTTGGGGAATTCGATTCCATCTTTCAATTTTAATGGTAATGGACCTTCCCCCATCTGGGATTTCGATTCCGATCATATCAAAATATCCCCTGTTCATTTTGGGTTTTTTTGGGTAATGTAAACAAGTTTCTGAAATTAGATTGATACCAAGTTCTAATTTGGGTACAGATACAGAGTCTGTGGTGGTGAATTTGTTGGAGAAGAAAGTGGTATTGACTCGAAGATTGCAGATTCCATCCACGTGCAACGATTCTCCAAGTAGAGTTTCAACGATCAAGAGATTGCTTGGTTCTTCTTTCAGATAA

mRNA sequence

ATGATAAACAGAGGCGCTGAGGCTCATATCTCTTTGGGTGGAAATAGTCGATGGTATCCTCCGATTGAAGATTTCTGGAAGATGAATTCTGATGCTGCATGCTTCGAAGATCCCTTGATGACAAGTATTGAGATGATCTATAGAGATTTTGAGGGAAGATTATGGTTGCTGCTTCGTGTTATGGATATTAAGTTGGAGGCCCATTTGGCCGAATTATGGACCATTCTTGAATGTATCAGACTGGTTGTTTCTTTGGGTTGTTCCAAGCTTATTGTGGAATCTGATTGCCAAATTGCTATCAAGTTTATTAATAAGGAGATAGAAGCTTGGTCGGACTCTGAGGCCTTAGTTCAGGAAATTGTGTTGACGGCTGATATTCGTTGTGCTGAATGCCAGAAGAAACTGGCGAATATTCTGTCCAAAATGAACGATACAGAGTCTGTGGTGGTGAATTTGTTGGAGAAGAAAGTGGTATTGACTCGAAGATTGCAGATTCCATCCACGTGCAACGATTCTCCAAGTAGAGTTTCAACGATCAAGAGATTGCTTGGTTCTTCTTTCAGATAA

Coding sequence (CDS)

ATGATAAACAGAGGCGCTGAGGCTCATATCTCTTTGGGTGGAAATAGTCGATGGTATCCTCCGATTGAAGATTTCTGGAAGATGAATTCTGATGCTGCATGCTTCGAAGATCCCTTGATGACAAGTATTGAGATGATCTATAGAGATTTTGAGGGAAGATTATGGTTGCTGCTTCGTGTTATGGATATTAAGTTGGAGGCCCATTTGGCCGAATTATGGACCATTCTTGAATGTATCAGACTGGTTGTTTCTTTGGGTTGTTCCAAGCTTATTGTGGAATCTGATTGCCAAATTGCTATCAAGTTTATTAATAAGGAGATAGAAGCTTGGTCGGACTCTGAGGCCTTAGTTCAGGAAATTGTGTTGACGGCTGATATTCGTTGTGCTGAATGCCAGAAGAAACTGGCGAATATTCTGTCCAAAATGAACGATACAGAGTCTGTGGTGGTGAATTTGTTGGAGAAGAAAGTGGTATTGACTCGAAGATTGCAGATTCCATCCACGTGCAACGATTCTCCAAGTAGAGTTTCAACGATCAAGAGATTGCTTGGTTCTTCTTTCAGATAA

Protein sequence

MINRGAEAHISLGGNSRWYPPIEDFWKMNSDAACFEDPLMTSIEMIYRDFEGRLWLLLRVMDIKLEAHLAELWTILECIRLVVSLGCSKLIVESDCQIAIKFINKEIEAWSDSEALVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRVSTIKRLLGSSFR
Homology
[Close]
BLAST of Lcy13g004470 vs. ExPASy TrEMBL
Match: A0A6J1DB71 (uncharacterized protein LOC111018707 OS=Momordica charantia OX=3673 GN=LOC111018707 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = 0 

Query: 116 LVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSR 175
           LVQEIVLTADIRC ECQ KLANILSK+NDTESVVVNLLEKKV+LTRRLQ+PSTC++S S+
Sbjct: 36  LVQEIVLTADIRCPECQNKLANILSKINDTESVVVNLLEKKVILTRRLQVPSTCSNSSSK 95

Query: 176 VSTIKRLLGSSFR 189
           V+TIKRLLGSSFR
Sbjct: 96  VATIKRLLGSSFR 108

[Close]
BLAST of Lcy13g004470 vs. ExPASy TrEMBL
Match: A0A6J1HUG9 (uncharacterized protein LOC111467567 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111467567 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 7.5e-21
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 0 

Query: 116 LVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSR 175
           LVQEIV TADI CAECQKKLANILSKMNDTESVVVNLL+KKV+LTR+LQIPS      SR
Sbjct: 39  LVQEIVFTADIGCAECQKKLANILSKMNDTESVVVNLLDKKVILTRKLQIPS------SR 98

Query: 176 VSTIKRLLGSSFR 189
           VST+KRLLGSSFR
Sbjct: 99  VSTVKRLLGSSFR 105

[Close]
BLAST of Lcy13g004470 vs. ExPASy TrEMBL
Match: A0A6J1HZ87 (uncharacterized protein LOC111467567 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467567 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.2e-20
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 117 VQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRV 176
           VQEIV TADI CAECQKKLANILSKMNDTESVVVNLL+KKV+LTR+LQIPS      SRV
Sbjct: 43  VQEIVFTADIGCAECQKKLANILSKMNDTESVVVNLLDKKVILTRKLQIPS------SRV 102

Query: 177 STIKRLLGSSFR 189
           ST+KRLLGSSFR
Sbjct: 103 STVKRLLGSSFR 108

[Close]
BLAST of Lcy13g004470 vs. ExPASy TrEMBL
Match: A0A6J1G188 (uncharacterized protein LOC111449743 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111449743 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.5e-18
Identity = 57/72 (79.17%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 116 LVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSR 175
           LVQEIV  ADI CAECQKKLANIL+KMNDTESVVVNLL+KKV+LTR+LQI +      SR
Sbjct: 37  LVQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIQT------SR 96

Query: 176 VSTIKRLLGSSF 188
           VSTIKRLLGSSF
Sbjct: 97  VSTIKRLLGSSF 102

[Close]
BLAST of Lcy13g004470 vs. ExPASy TrEMBL
Match: A0A6J1G176 (uncharacterized protein LOC111449743 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449743 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 117 VQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRV 176
           VQEIV  ADI CAECQKKLANIL+KMNDTESVVVNLL+KKV+LTR+LQI +      SRV
Sbjct: 65  VQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIQT------SRV 124

Query: 177 STIKRLLGSSF 188
           STIKRLLGSSF
Sbjct: 125 STIKRLLGSSF 129

[Close]
BLAST of Lcy13g004470 vs. NCBI nr
Match: XP_022150612.1 (uncharacterized protein LOC111018707 [Momordica charantia])

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-24
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = 0 

Query: 116 LVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSR 175
           LVQEIVLTADIRC ECQ KLANILSK+NDTESVVVNLLEKKV+LTRRLQ+PSTC++S S+
Sbjct: 36  LVQEIVLTADIRCPECQNKLANILSKINDTESVVVNLLEKKVILTRRLQVPSTCSNSSSK 95

Query: 176 VSTIKRLLGSSFR 189
           V+TIKRLLGSSFR
Sbjct: 96  VATIKRLLGSSFR 108

[Close]
BLAST of Lcy13g004470 vs. NCBI nr
Match: XP_022968296.1 (uncharacterized protein LOC111467567 isoform X3 [Cucurbita maxima])

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-20
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 0 

Query: 116 LVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSR 175
           LVQEIV TADI CAECQKKLANILSKMNDTESVVVNLL+KKV+LTR+LQIPS      SR
Sbjct: 39  LVQEIVFTADIGCAECQKKLANILSKMNDTESVVVNLLDKKVILTRKLQIPS------SR 98

Query: 176 VSTIKRLLGSSFR 189
           VST+KRLLGSSFR
Sbjct: 99  VSTVKRLLGSSFR 105

[Close]
BLAST of Lcy13g004470 vs. NCBI nr
Match: XP_022968294.1 (uncharacterized protein LOC111467567 isoform X1 [Cucurbita maxima])

HSP 1 Score: 109.0 bits (271), Expect = 4.5e-20
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 117 VQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSRV 176
           VQEIV TADI CAECQKKLANILSKMNDTESVVVNLL+KKV+LTR+LQIPS      SRV
Sbjct: 43  VQEIVFTADIGCAECQKKLANILSKMNDTESVVVNLLDKKVILTRKLQIPS------SRV 102

Query: 177 STIKRLLGSSFR 189
           ST+KRLLGSSFR
Sbjct: 103 STVKRLLGSSFR 108

[Close]
BLAST of Lcy13g004470 vs. NCBI nr
Match: KAG7013033.1 (hypothetical protein SDJN02_25789 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-19
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 0 

Query: 116 LVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSR 175
           LVQEIV  ADI CAECQKKLANIL+KMNDTESVVVNLL+KKV+LTR+LQIP+      SR
Sbjct: 38  LVQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIPT------SR 97

Query: 176 VSTIKRLLGSSFR 189
           VSTIKRLLGSSFR
Sbjct: 98  VSTIKRLLGSSFR 104

[Close]
BLAST of Lcy13g004470 vs. NCBI nr
Match: XP_023542320.1 (uncharacterized protein LOC111802252 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106.7 bits (265), Expect = 2.2e-19
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 0 

Query: 116 LVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLTRRLQIPSTCNDSPSR 175
           LVQEIV  ADI CAECQKKLANIL+KMNDTESVVVNLL+KKV+LTR+LQIP+      SR
Sbjct: 39  LVQEIVFAADIGCAECQKKLANILAKMNDTESVVVNLLDKKVILTRKLQIPT------SR 98

Query: 176 VSTIKRLLGSSFR 189
           VSTIKRLLGSSFR
Sbjct: 99  VSTIKRLLGSSFR 105

[Close]
BLAST of Lcy13g004470 vs. TAIR 10
Match: AT1G68585.1 (unknown protein; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-10
Identity = 37/77 (48.05%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 113 SEALVQEIVLTADIRCAECQKKLANILSKMNDTESVVVNLLEKKVVLT------RRLQIP 172
           S  L+QEIVL+ADIRC++CQ+K+A+I+++M +T S++V++LEKKV LT      RR+   
Sbjct: 35  SMPLIQEIVLSADIRCSDCQEKVADIMARMIETYSILVSVLEKKVTLTCTYSGDRRVS-K 94

Query: 173 STCNDSPSRVSTIKRLL 184
           S       ++STIKRL+
Sbjct: 95  SYGEALLCKISTIKRLI 110

The following BLAST results are available for this feature:
BLAST of Lcy13g004470 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g004470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DB711.1e-2486.30uncharacterized protein LOC111018707 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1HUG97.5e-2183.56uncharacterized protein LOC111467567 isoform X3 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HZ872.2e-2083.33uncharacterized protein LOC111467567 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1G1883.5e-1879.17uncharacterized protein LOC111449743 isoform X3 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1G1761.0e-1778.87uncharacterized protein LOC111449743 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of Lcy13g004470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150612.12.3e-2486.30uncharacterized protein LOC111018707 [Momordica charantia][more]
XP_022968296.11.6e-2083.56uncharacterized protein LOC111467567 isoform X3 [Cucurbita maxima][more]
XP_022968294.14.5e-2083.33uncharacterized protein LOC111467567 isoform X1 [Cucurbita maxima][more]
KAG7013033.12.2e-1980.82hypothetical protein SDJN02_25789 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023542320.12.2e-1980.82uncharacterized protein LOC111802252 [Cucurbita pepo subsp. pepo][more]
BLAST of Lcy13g004470 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G68585.15.9e-1048.05unknown protein; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 25..162
e-value: 6.3E-7
score: 31.5
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 29..121
e-value: 1.6E-7
score: 31.2
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 29..120
e-value: 1.02243E-12
score: 60.0204
IPR036163Heavy metal-associated domain superfamilySUPERFAMILY55008HMA, heavy metal-associated domaincoord: 118..162
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 24..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g004470.1Lcy13g004470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity