Lcy13g004150 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g004150
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protein IDA
Location	Chr13: 3545520 .. 3545952 (-)
RNA-Seq Expression	Lcy13g004150
Synteny	Lcy13g004150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAACCTTCTCTCTTCAACCACAACAATGGCGTCTTCTTCTTCTTCTTCTTCTTTCCAATGCAAACGCTTCTCTTTCTACAACCCCATCGCCATTTTCCTTCTCCTTCTCCTTCTTCTTTCTGGGTTTTGCTCTGCAACTCGCCCGGGAAAAACCATGGCACCTGGGACCCATTCCGATCAGCAAGAGAATTTCAATTACAAGACAGGCTTCCGATATGTCGGCCAGACCTTCAGCTTTCTCCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACAGGCACAACTCTGTACTCGACTCTGTTCCTCCCAATTGAAATTTCTTATTTCTTTCTTCTTTTATTTCCATTATGGAAATCCACTTTTTTCTTTTCTTTTCTTTTTTTGGAATACACACAAATTACACCATTCATATAGGATCAAATCAT

mRNA sequence

CTCAAACCTTCTCTCTTCAACCACAACAATGGCGTCTTCTTCTTCTTCTTCTTCTTTCCAATGCAAACGCTTCTCTTTCTACAACCCCATCGCCATTTTCCTTCTCCTTCTCCTTCTTCTTTCTGGGTTTTGCTCTGCAACTCGCCCGGGAAAAACCATGGCACCTGGGACCCATTCCGATCAGCAAGAGAATTTCAATTACAAGACAGGCTTCCGATATGTCGGCCAGACCTTCAGCTTTCTCCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACAGGCACAACTCTGTACTCGACTCTGTTCCTCCCAATTGAAATTTCTTATTTCTTTCTTCTTTTATTTCCATTATGGAAATCCACTTTTTTCTTTTCTTTTCTTTTTTTGGAATACACACAAATTACACCATTCATATAGGATCAAATCAT

Coding sequence (CDS)

ATGGCGTCTTCTTCTTCTTCTTCTTCTTTCCAATGCAAACGCTTCTCTTTCTACAACCCCATCGCCATTTTCCTTCTCCTTCTCCTTCTTCTTTCTGGGTTTTGCTCTGCAACTCGCCCGGGAAAAACCATGGCACCTGGGACCCATTCCGATCAGCAAGAGAATTTCAATTACAAGACAGGCTTCCGATATGTCGGCCAGACCTTCAGCTTTCTCCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACAGGCACAACTCTGTACTCGACTCTGTTCCTCCCAATTGA

Protein sequence

MASSSSSSSFQCKRFSFYNPIAIFLLLLLLLSGFCSATRPGKTMAPGTHSDQQENFNYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN

Homology

[Close]

BLAST of Lcy13g004150 vs. ExPASy Swiss-Prot
Match: Q8LAD7 (Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.9e-05
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 24 FLLLLLLLSGFCSATRPGKTMAPGTHSDQQENFNYKTGFRYVGQTFSFLPRGVPIPPSGP 83
          F+L L   S   +A R G TM      + ++N    T F+     F +LP+GVPIPPS P
Sbjct: 13 FVLFLAASSSCVAAARIGATM------EMKKNIKRLT-FKN-SHIFGYLPKGVPIPPSAP 72

Query: 84 SDRHNSVLDSVP 96
          S RHNS ++S+P
Sbjct: 73 SKRHNSFVNSLP 76

[Close]

BLAST of Lcy13g004150 vs. ExPASy TrEMBL
Match: A0A5D3CCP4 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00620 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 67/97 (69.07%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 2   ASSSSSSSFQCKRFSFYNPIAIFLLLLLLLSGFCSATRPGKTMAPGTHSDQQENFNYK-T 61
           +SSSSSSSFQ K+    N I IF+LLLLLLSGF SATRPG TM          N NYK T
Sbjct: 14  SSSSSSSSFQFKQ----NSIPIFILLLLLLSGFSSATRPGGTM----EFPDMSNSNYKTT 73

Query: 62  GFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN 98
            FRY GQTF FLP+GVPIPPSGPSDRHNSV+DS+PPN
Sbjct: 74  AFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of Lcy13g004150 vs. ExPASy TrEMBL
Match: A0A5A7SV51 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005330 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 67/97 (69.07%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 2  ASSSSSSSFQCKRFSFYNPIAIFLLLLLLLSGFCSATRPGKTMAPGTHSDQQENFNYK-T 61
          +SSSSSSSFQ K+    N I IF+LLLLLLSGF SATRPG TM          N NYK T
Sbjct: 10 SSSSSSSSFQFKQ----NSIPIFILLLLLLSGFSSATRPGGTM----EFPDMSNSNYKTT 69

Query: 62 GFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN 98
           FRY GQTF FLP+GVPIPPSGPSDRHNSV+DS+PPN
Sbjct: 70 AFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 98

[Close]

BLAST of Lcy13g004150 vs. ExPASy TrEMBL
Match: A0A0A0KR07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.9e-21
Identity = 63/97 (64.95%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 1  MASSSSSSSFQCKRFSFYNPIAIFLLLLLLLSGFCSATRPGKTMAPGTHSDQQENFNYKT 60
          M SSSS +S          PI I LLLLLLLSG  SATRPGKTM   T  +   + +YKT
Sbjct: 1  MPSSSSQTSI---------PIFILLLLLLLLSGLSSATRPGKTM-EFTEMNPDMSNSYKT 60

Query: 61 GFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN 98
           FRY GQTFSFLP+GVPIPPSGPSDRHNSV+DS+PPN
Sbjct: 61 AFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of Lcy13g004150 vs. ExPASy TrEMBL
Match: A0A2P6R1Y4 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0436131 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.5e-14
Identity = 49/105 (46.67%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 1   MASSSSSSSFQCKRFSFYNPIAIFLLLLLLLSGFCSATRPGKTMAPG--------THSDQ 60
           MASSSSSSS  C +  + +    FL L+LLL G C+ATR GKT+            H+ +
Sbjct: 1   MASSSSSSSSSCSKSKYLS----FLFLVLLLIGSCAATRQGKTLVDHDQRVYMNMEHTKE 60

Query: 61  QENFNYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN 98
                ++T FR+ G+ FSF P+G P+PPSGPS RHNSV++S P N
Sbjct: 61  LNLKKHQTAFRFRGEIFSFFPKGSPVPPSGPSKRHNSVVNSTPKN 101

[Close]

BLAST of Lcy13g004150 vs. ExPASy TrEMBL
Match: A0A498HL28 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_007353 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 53/106 (50.00%), Postives = 64/106 (60.38%), Query Frame = 0


Query: 1   MASSSSSSSFQCKRFSFYNPIAIFLLLLLLLSGFCSATRPGKTMAPG------THSDQQE 60
           MAS+SS  S      S  N + + LL+L LL G C+ATR GKT+          + D  E
Sbjct: 1   MASTSSLKSINFS--SCKNTVFVVLLVLNLLMGCCTATRLGKTLVVSLDGKALMNLDHTE 60

Query: 61  NFN---YKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN 98
            FN   +KTGFRY GQ FS+ P+G  IPPSGPS RHNSV+DS P N
Sbjct: 61  TFNPRKHKTGFRYKGQIFSYFPKGTIIPPSGPSKRHNSVVDSTPRN 104

[Close]

BLAST of Lcy13g004150 vs. NCBI nr
Match: KAG6601330.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 1.1e-25
Identity = 69/97 (71.13%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 1  MASSSSSSSFQCKRFSFYNPIAIFLLLLLLLSGFCSATRPGKTMAPGTHSDQQENFNYKT 60
          M SSSSSSS      S     AIF+LLLLL+SGFCSATRPGKTM      D   NFNYKT
Sbjct: 1  MLSSSSSSSSSSSSSSL---SAIFVLLLLLVSGFCSATRPGKTMGHELKPD-LSNFNYKT 60

Query: 61 GFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN 98
          GFRYVGQTFS+LPRGVPIPPSGPSDRHNS++DS+PP+
Sbjct: 61 GFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS 93

[Close]

BLAST of Lcy13g004150 vs. NCBI nr
Match: KAG7032113.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.8 bits (312), Expect = 4.1e-25
Identity = 68/97 (70.10%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 1  MASSSSSSSFQCKRFSFYNPIAIFLLLLLLLSGFCSATRPGKTMAPGTHSDQQENFNYKT 60
          M SSSSSSS            AIF+LLLLL+SGFCSATRPGKTM      D   NFNYKT
Sbjct: 1  MLSSSSSSSSSLS--------AIFVLLLLLVSGFCSATRPGKTMGHELKPDLL-NFNYKT 60

Query: 61 GFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN 98
          GFRYVGQTFS+LPRGVPIPPSGPSDRHNS++DS+PP+
Sbjct: 61 GFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS 88

[Close]

BLAST of Lcy13g004150 vs. NCBI nr
Match: KAA0034518.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-23
Identity = 67/97 (69.07%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 2  ASSSSSSSFQCKRFSFYNPIAIFLLLLLLLSGFCSATRPGKTMAPGTHSDQQENFNYK-T 61
          +SSSSSSSFQ K+    N I IF+LLLLLLSGF SATRPG TM          N NYK T
Sbjct: 10 SSSSSSSSFQFKQ----NSIPIFILLLLLLSGFSSATRPGGTM----EFPDMSNSNYKTT 69

Query: 62 GFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN 98
           FRY GQTF FLP+GVPIPPSGPSDRHNSV+DS+PPN
Sbjct: 70 AFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 98

[Close]

BLAST of Lcy13g004150 vs. NCBI nr
Match: TYK09072.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 2.2e-23
Identity = 67/97 (69.07%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 2   ASSSSSSSFQCKRFSFYNPIAIFLLLLLLLSGFCSATRPGKTMAPGTHSDQQENFNYK-T 61
           +SSSSSSSFQ K+    N I IF+LLLLLLSGF SATRPG TM          N NYK T
Sbjct: 14  SSSSSSSSFQFKQ----NSIPIFILLLLLLSGFSSATRPGGTM----EFPDMSNSNYKTT 73

Query: 62  GFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN 98
            FRY GQTF FLP+GVPIPPSGPSDRHNSV+DS+PPN
Sbjct: 74  AFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of Lcy13g004150 vs. NCBI nr
Match: KAG6574002.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.7 bits (278), Expect = 3.6e-21
Identity = 62/97 (63.92%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 1  MASSSSSSSFQCKRFSFYNPIAIFLLLLLLLSGFCSATRPGKTMAPGTHSDQQENFNYKT 60
          MASSSS+           NP+AI +L LLLLSGFCSATRP K   P   S  Q   NYKT
Sbjct: 1  MASSSSN-----------NPVAIVVLALLLLSGFCSATRPLKPTGPEMDSG-QVGLNYKT 60

Query: 61 GFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN 98
          GFRY G+TFSFLPR +PIPPS PSDRHNSV+DSVP N
Sbjct: 61 GFRYRGETFSFLPRNIPIPPSAPSDRHNSVVDSVPSN 85

[Close]

BLAST of Lcy13g004150 vs. TAIR 10
Match: AT1G68765.1 (Putative membrane lipoprotein )

HSP 1 Score: 48.5 bits (114), Expect = 3.5e-06
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 24 FLLLLLLLSGFCSATRPGKTMAPGTHSDQQENFNYKTGFRYVGQTFSFLPRGVPIPPSGP 83
          F+L L   S   +A R G TM      + ++N    T F+     F +LP+GVPIPPS P
Sbjct: 13 FVLFLAASSSCVAAARIGATM------EMKKNIKRLT-FKN-SHIFGYLPKGVPIPPSAP 72

Query: 84 SDRHNSVLDSVP 96
          S RHNS ++S+P
Sbjct: 73 SKRHNSFVNSLP 76

[Close]

BLAST of Lcy13g004150 vs. TAIR 10
Match: AT5G64667.1 (inflorescence deficient in abscission (IDA)-like 2 )

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 25/67 (37.31%), Postives = 33/67 (49.25%), Query Frame = 0


Query: 25 LLLLLLLSGFCSATRPGKTMAPG-THSDQQENFNYKTGFRYVGQTFSFLPRGVPIPPSGP 84
          LLLL+LL GFC+  R    +     H    +  +  T      Q   FLPR  P+P SGP
Sbjct: 24 LLLLILLLGFCNGARTNTNVFNSKPHKKHNDAVSSST-----KQFLGFLPRHFPVPASGP 83

Query: 85 SDRHNSV 91
          S +HN +
Sbjct: 84 SRKHNDI 85

[Close]

BLAST of Lcy13g004150 vs. TAIR 10
Match: AT3G25655.1 (inflorescence deficient in abscission (IDA)-like 1 )

HSP 1 Score: 40.8 bits (94), Expect = 7.3e-04
Identity = 22/75 (29.33%), Postives = 39/75 (52.00%), Query Frame = 0


Query: 21 IAIFLLLLLLLSGFCSATRPGKTMAPGTHSDQ-QENFNYKTGFRYVGQTFSFLPRGVPIP 80
          + ++++ LL+   + +  R G      T   Q +       GF + G+ F    + V +P
Sbjct: 10 MTLYIVFLLIFGSYNATARIGPIKLSETEIVQTRSRQEIIGGFTFKGRVFHSFSKRVLVP 69

Query: 81 PSGPSDRHNSVLDSV 95
          PSGPS RHNSV++++
Sbjct: 70 PSGPSMRHNSVVNNL 84

The following BLAST results are available for this feature:

BLAST of Lcy13g004150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LAD7	4.9e-05	41.67	Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1	[more]

BLAST of Lcy13g004150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CCP4	1.1e-23	69.07	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SV51	1.1e-23	69.07	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0KR07	3.9e-21	64.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1	[more]
A0A2P6R1Y4	3.5e-14	46.67	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0436131 PE=4...	[more]
A0A498HL28	1.0e-13	50.00	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_007353 PE=4 SV=1	[more]

BLAST of Lcy13g004150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601330.1	1.1e-25	71.13	Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7032113.1	4.1e-25	70.10	Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAA0034518.1	2.2e-23	69.07	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]
TYK09072.1	2.2e-23	69.07	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]
KAG6574002.1	3.6e-21	63.92	Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lcy13g004150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68765.1	3.5e-06	41.67	Putative membrane lipoprotein	[more]
AT5G64667.1	1.5e-04	37.31	inflorescence deficient in abscission (IDA)-like 2	[more]
AT3G25655.1	7.3e-04	29.33	inflorescence deficient in abscission (IDA)-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..97
None	No IPR available	PANTHER	PTHR33599:SF18	PROTEIN IDA	coord: 5..97
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 5..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g004150.1	Lcy13g004150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission
cellular_component	GO:0110165	cellular anatomical entity