Lcy13g003890 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g003890
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	chaperonin 60 beta
Location	Chr13: 3296031 .. 3297763 (-)
RNA-Seq Expression	Lcy13g003890
Synteny	Lcy13g003890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGCAGCAACTGTGATCAGAGAAGATAGTGGATTGACTTTAGAAAAGACCGGCAAAGAGGTATTGGGCTCTGCTACTAAGGTTGTTATATCAAAGGATTCCACACTAATAGTTACAGATGGGAGTACTCGGGAAGCAGTTCAGAAAAGGGTTTTACAAATTCAAAAGCTTATGGAGGTGCTGGAATCATCCCTTATCTATGCTGAGATATCCTACATTTCGAGGTTTTCTGCATTGCAGGATCCATTTCTAAGTAATATAAAAGAACGCAAATTTCCATGCTGAACTATATTGCTTTGACGTTTAGTTGAATTACAACAAGAGACATACTACCATCTATTCTGCAGAATACTGAGGAAAAATTTCCAAAGAAGATACTGAATGAGAGAATTGCTAGATTATCTGGGCGAATTGCTATACTTCAGGTATATTCTAAGAAACTCAAAATATTGATTATATCAACATAGGGAAATAGCAACCAACACCAGTTTTATTCAGTTTTTCATATTCTAAATTGTAGGTAGGAGCACAAACTCAAGTTGAGTTGAAGGATAGACAGTTAAGGATTGAGGATGCCTTGAATGCTTCGAAGGTGTATGTTTGGTCTGTTTTCCTTGAGAATAGGAGTTTCAAATATCATTTATAACCTTATGTTTTTTGTAGGCTGCTATTGAAGAAGGCGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACCAAGGTGGATGCTATAAAAAATGTCCTGGAAAATGACGAACAGAGGGTATCCGTCTTGGTTTACCCCAAAATTTTCTGTTATAAATTCTTAATATCAAGTGTTAAGTTGTATGCTTGAATATGATGATTACAGGGTAGATTTAGTTTTAATTAGCATATCAACTAGAATATTACGTTAATTCATACGATGGGTTCTCTACTTTGTTTATATCGACTGCACTGGTCAACTGCAGATTGGAGCTGAAATTTTCAAAAGGGCTTTGTGTTATCCTACAAAACTGATAGCGAGAAATGCCGGTGTCAATGGAAGTGTGGTTATAGATAAGGTCGCTGCGAACAAAGGAATTTGCTTCTAATTTGCGGTGTATAATCTTTTTGCTTCTCATTTTCACATACCGAGTCTAATGAATCATGGTAAAATTATTTTTATATTTTGCAGGTTCTAATTAACAATGATATGAATTATGGATATAATGCCGCCACAGACCATTACGAGGATTTAATGAAAGCTGGAATCATGGATCCATCAAAGGTTTATGAACTTTCTTCAGAACTCTTTGACGGTTTTGTTTTACCATTCCGAATAATTTAAGGAATTTAATCGAAACATTTAGCAGAAAAGCATCCATCTTTGAGCGAAATATGAAATTTTAGTAATTAAAGGAACTTGAAAAACATAGATTGGAGAAAGTTGATTGAAAAATGTAGTGAAGGAGTAGTTTTCCATCAACCAACTATCCATTGGACTAAATTTTAGTTCTCTACTGAAATCTGGGGCAGGTAGTCAGATGTTGCCTGGAGCATGCAGCTTCTGTTGCCAAAACTTTTCTGACATCCGATGCTGTTGTAGTTGATATAAAGGAACCAGAACCCATCCCAAGAAGAACACCGATGCCAAGCTCAGGTAATGGCCAAACAAATATATGGGCCTTTATTTCTCTGATATCCATTCGTTTGATCAACAATCCTGCATTTGATGTTCCAGGTATCAGACAAATGGGTCTTTAG

mRNA sequence

ATGTTTGCAGCAACTGTGATCAGAGAAGATAGTGGATTGACTTTAGAAAAGACCGGCAAAGAGGTATTGGGCTCTGCTACTAAGGTTGTTATATCAAAGGATTCCACACTAATAGTTACAGATGGGAGTACTCGGGAAGCAGTTCAGAAAAGGGTTTTACAAATTCAAAAGCTTATGGAGAATACTGAGGAAAAATTTCCAAAGAAGATACTGAATGAGAGAATTGCTAGATTATCTGGGCGAATTGCTATACTTCAGGTAGGAGCACAAACTCAAGTTGAGTTGAAGGATAGACAGTTAAGGATTGAGGATGCCTTGAATGCTTCGAAGGCTGCTATTGAAGAAGGCGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACCAAGGTGGATGCTATAAAAAATGTCCTGGAAAATGACGAACAGAGGATTGGAGCTGAAATTTTCAAAAGGGCTTTGTGTTATCCTACAAAACTGATAGCGAGAAATGCCGGTGTCAATGGAAGTGTGGTTATAGATAAGGTTCTAATTAACAATGATATGAATTATGGATATAATGCCGCCACAGACCATTACGAGGATTTAATGAAAGCTGGAATCATGGATCCATCAAAGGTAGTCAGATGTTGCCTGGAGCATGCAGCTTCTGTTGCCAAAACTTTTCTGACATCCGATGCTGTTGTAGTTGATATAAAGGAACCAGAACCCATCCCAAGAAGAACACCGATGCCAAGCTCAGGTAATGGCCAAACAAATATATGGGCCTTTATTTCTCTGATATCCATTCGTTTGATCAACAATCCTGCATTTGATGTTCCAGGTATCAGACAAATGGGTCTTTAG

Coding sequence (CDS)

ATGTTTGCAGCAACTGTGATCAGAGAAGATAGTGGATTGACTTTAGAAAAGACCGGCAAAGAGGTATTGGGCTCTGCTACTAAGGTTGTTATATCAAAGGATTCCACACTAATAGTTACAGATGGGAGTACTCGGGAAGCAGTTCAGAAAAGGGTTTTACAAATTCAAAAGCTTATGGAGAATACTGAGGAAAAATTTCCAAAGAAGATACTGAATGAGAGAATTGCTAGATTATCTGGGCGAATTGCTATACTTCAGGTAGGAGCACAAACTCAAGTTGAGTTGAAGGATAGACAGTTAAGGATTGAGGATGCCTTGAATGCTTCGAAGGCTGCTATTGAAGAAGGCGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACCAAGGTGGATGCTATAAAAAATGTCCTGGAAAATGACGAACAGAGGATTGGAGCTGAAATTTTCAAAAGGGCTTTGTGTTATCCTACAAAACTGATAGCGAGAAATGCCGGTGTCAATGGAAGTGTGGTTATAGATAAGGTTCTAATTAACAATGATATGAATTATGGATATAATGCCGCCACAGACCATTACGAGGATTTAATGAAAGCTGGAATCATGGATCCATCAAAGGTAGTCAGATGTTGCCTGGAGCATGCAGCTTCTGTTGCCAAAACTTTTCTGACATCCGATGCTGTTGTAGTTGATATAAAGGAACCAGAACCCATCCCAAGAAGAACACCGATGCCAAGCTCAGGTAATGGCCAAACAAATATATGGGCCTTTATTTCTCTGATATCCATTCGTTTGATCAACAATCCTGCATTTGATGTTCCAGGTATCAGACAAATGGGTCTTTAG

Protein sequence

MFAATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTEEKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDMNYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRTPMPSSGNGQTNIWAFISLISIRLINNPAFDVPGIRQMGL

Homology

[Close]

BLAST of Lcy13g003890 vs. ExPASy Swiss-Prot
Match: Q9LJE4 (Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN60B2 PE=1 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.6e-93
Identity = 170/248 (68.55%), Postives = 215/248 (86.69%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIRE+ GL+L+K GKEVLG+A+KVV++K+ T IV DG+T+EAV KRV+QI+ L+E  E
Sbjct: 348 ATVIREEVGLSLDKAGKEVLGNASKVVLTKEMTTIVGDGTTQEAVNKRVVQIRNLIEQAE 407

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           + + K+ LNERIA+LSG +A++QVGAQT+ ELK+++LR+EDALNA+KAA+EEG+VVGGGC
Sbjct: 408 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 467

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
            LLRL++KVDAIK+ LENDE+++GAEI KRAL YP KLIA+NAGVNGSVV +KVL N+++
Sbjct: 468 TLLRLASKVDAIKDTLENDEEKVGAEIVKRALSYPLKLIAKNAGVNGSVVSEKVLANDNV 527

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
            +GYNAAT  YEDLM AGI+DP+KVVRCCLEHAASVAKTFL SD VVV+I EPEP+P   
Sbjct: 528 KFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIPEPEPVPAGN 587

Query: 244 PMPSSGNG 252
           PM +SG G
Sbjct: 588 PMDNSGYG 595

[Close]

BLAST of Lcy13g003890 vs. ExPASy Swiss-Prot
Match: P21240 (Chaperonin 60 subunit beta 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN60B1 PE=1 SV=3)

HSP 1 Score: 340.5 bits (872), Expect = 1.8e-92
Identity = 168/248 (67.74%), Postives = 216/248 (87.10%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIRE+ GL+L+K GKEVLG+A+KVV++K+++ IV DGST++AV+KRV QI+ L+E  E
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAE 411

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           + + K+ LNERIA+LSG +A++QVGAQT+ ELK+++LR+EDALNA+KAA+EEG+VVGGGC
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
            LLRL++KVDAIK  L+NDE+++GA+I KRAL YP KLIA+NAGVNGSVV +KVL N+++
Sbjct: 472 TLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNV 531

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
            +GYNAAT  YEDLM AGI+DP+KVVRCCLEHAASVAKTFL SD VVV+IKEPEP+P   
Sbjct: 532 KFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVPVGN 591

Query: 244 PMPSSGNG 252
           PM +SG G
Sbjct: 592 PMDNSGYG 599

[Close]

BLAST of Lcy13g003890 vs. ExPASy Swiss-Prot
Match: Q43831 (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale OX=4550 GN=CPN60 PE=2 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.6e-91
Identity = 168/247 (68.02%), Postives = 208/247 (84.21%), Query Frame = 0


Query: 5   TVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTEE 64
           TVIR++ GLTL+K    VLG+A KVV++K+ST IV DGST+E V KRV QI+ L+E  E+
Sbjct: 252 TVIRDEVGLTLDKADNTVLGTAAKVVLTKESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQ 311

Query: 65  KFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGCC 124
            + K+ LNERIA+L+G +A++QVGAQT+ ELK+++LR+EDALNA+KAA+EEG+VVGGGC 
Sbjct: 312 DYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 371

Query: 125 LLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDMN 184
           LLRL+ KVDAIK+ LENDEQ++GAEI +RALCYP KLIA+NAGVNGSVV +KVL N++  
Sbjct: 372 LLRLAAKVDAIKDTLENDEQKVGAEIVRRALCYPLKLIAKNAGVNGSVVTEKVLSNDNFK 431

Query: 185 YGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRTP 244
           +GYNAAT  YEDLM AGI+DP+KVVRCCLEHAASVAKTFLTSD VVV+IKEPE  P   P
Sbjct: 432 FGYNAATGQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVEIKEPEAAPLANP 491

Query: 245 MPSSGNG 252
           M +SG G
Sbjct: 492 MDNSGFG 498

[Close]

BLAST of Lcy13g003890 vs. ExPASy Swiss-Prot
Match: Q9C667 (Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN60B4 PE=1 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 3.4e-91
Identity = 171/254 (67.32%), Postives = 216/254 (85.04%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIR++ GL+LEK GKEVLG+A +V+++KDSTLIVT+G T++AV +RV QI+ L+ENTE
Sbjct: 336 ATVIRDEMGLSLEKAGKEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIENTE 395

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           E F KKILNER+ARLSG IAI+QVGA TQVELKD+QL++EDALNA+K+AIEEG+VVGGGC
Sbjct: 396 ENFQKKILNERVARLSGGIAIIQVGALTQVELKDKQLKVEDALNATKSAIEEGIVVGGGC 455

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
            LLRL+TKVD IK  L+N EQ+IGAEIFK+AL YP +LIA+NA  NG++VI+KVL N + 
Sbjct: 456 ALLRLATKVDRIKETLDNTEQKIGAEIFKKALSYPIRLIAKNADTNGNIVIEKVLSNKNT 515

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIP-RR 243
            YGYNAA + YEDLM AGI+DP+KVVRCCLEHA+SVA+TFLTSD VVV+IKE +P P   
Sbjct: 516 MYGYNAAKNQYEDLMLAGIIDPTKVVRCCLEHASSVAQTFLTSDCVVVEIKEIKPRPIIN 575

Query: 244 TPMPSSGNGQTNIW 257
            P+P+S    ++++
Sbjct: 576 PPLPTSSPATSSMF 589

[Close]

BLAST of Lcy13g003890 vs. ExPASy Swiss-Prot
Match: P21241 (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 6.4e-90
Identity = 164/237 (69.20%), Postives = 208/237 (87.76%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIRE+ GL+L+K GKEVLG A KVV++K+++ IV DGST++AVQKRV QI+ L+E  E
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGHAAKVVLTKETSTIVGDGSTQDAVQKRVTQIKNLIEQAE 411

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           + + K+ LNERIA+LSG +A++QVGAQT+ ELK+++LR+EDALNA+KAA+EEG+VVGGGC
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
            LLRL++KVDAIK  L+NDE+++GA+I KRAL YP KLIA+NAGVNGSVV +KVL N+++
Sbjct: 472 TLLRLASKVDAIKAALDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNV 531

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIP 241
            +GYNAAT  YEDLM AGI+DP+KVVRCCLEHAASVAKTFL SD VVV+IKEPEP+P
Sbjct: 532 KFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVP 588

[Close]

BLAST of Lcy13g003890 vs. ExPASy TrEMBL
Match: A0A6J1HZU9 (chaperonin 60 subunit beta 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467722 PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.2e-123
Identity = 234/246 (95.12%), Postives = 242/246 (98.37%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIREDSGLTLEKTGKEVLGSATKVVI+KDSTLIVTDG+TREAVQKRVLQIQKL+ENTE
Sbjct: 337 ATVIREDSGLTLEKTGKEVLGSATKVVITKDSTLIVTDGTTREAVQKRVLQIQKLLENTE 396

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           EKFPKKILNERIARLSGRIAILQVGAQTQVELKD+QLRIEDALNASKAAIEEGVVVGGGC
Sbjct: 397 EKFPKKILNERIARLSGRIAILQVGAQTQVELKDKQLRIEDALNASKAAIEEGVVVGGGC 456

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
           CLLRLSTKVDAIKNVLEN+EQ IGAEIFKRAL YPTKLIARNAGVNGSVVIDKVLINNDM
Sbjct: 457 CLLRLSTKVDAIKNVLENEEQMIGAEIFKRALSYPTKLIARNAGVNGSVVIDKVLINNDM 516

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
           NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVD+KEPEP PRRT
Sbjct: 517 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDMKEPEPFPRRT 576

Query: 244 PMPSSG 250
            +P+SG
Sbjct: 577 TLPNSG 582

[Close]

BLAST of Lcy13g003890 vs. ExPASy TrEMBL
Match: A0A6J1G0R7 (chaperonin 60 subunit beta 4, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111449606 PE=3 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 7.8e-123
Identity = 233/246 (94.72%), Postives = 241/246 (97.97%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIREDSGLTLEKTGKEVLGSATKVVI+KDSTLIVTDG+TREAVQKRVLQIQKL+ENTE
Sbjct: 337 ATVIREDSGLTLEKTGKEVLGSATKVVITKDSTLIVTDGTTREAVQKRVLQIQKLLENTE 396

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           EKFPKKILNERIARLSGRIAILQVGAQTQVELKD+QLRIEDALNASKAAIEEGVVVGGGC
Sbjct: 397 EKFPKKILNERIARLSGRIAILQVGAQTQVELKDKQLRIEDALNASKAAIEEGVVVGGGC 456

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
           CLLRLSTKVDAIKNVLEN+EQ IGAEIFKRAL YPT+LIARNAGVNGSVVIDKVLINNDM
Sbjct: 457 CLLRLSTKVDAIKNVLENEEQMIGAEIFKRALSYPTRLIARNAGVNGSVVIDKVLINNDM 516

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
           N+GYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPE  PRRT
Sbjct: 517 NFGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPESFPRRT 576

Query: 244 PMPSSG 250
           P+P SG
Sbjct: 577 PLPISG 582

[Close]

BLAST of Lcy13g003890 vs. ExPASy TrEMBL
Match: A0A0A0KWB1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G607990 PE=3 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 3.1e-119
Identity = 226/246 (91.87%), Postives = 238/246 (96.75%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATV+RED+GLTLEKTGKEVLGSA KVVISKDSTLIVTDG+TREAVQKRVLQIQKLMENTE
Sbjct: 367 ATVVREDNGLTLEKTGKEVLGSACKVVISKDSTLIVTDGNTREAVQKRVLQIQKLMENTE 426

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           EKFPKKILNERIARLSGRIAI+QVGAQT+VELKDRQLRIEDALNASKAAIEEGVVVGGGC
Sbjct: 427 EKFPKKILNERIARLSGRIAIIQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGC 486

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
           CLLRLSTKVDAIKNVLENDEQ +GAEIFKRAL YPTKLIARNAGVNGSVVIDK+L NND+
Sbjct: 487 CLLRLSTKVDAIKNVLENDEQMVGAEIFKRALSYPTKLIARNAGVNGSVVIDKILSNNDL 546

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
           +YGYNAATD YEDLMKAGIMDPSKVVRCCLEHAASV+KTFLTSDAVVVD+KE + IPRRT
Sbjct: 547 DYGYNAATDRYEDLMKAGIMDPSKVVRCCLEHAASVSKTFLTSDAVVVDMKESQLIPRRT 606

Query: 244 PMPSSG 250
           PMP SG
Sbjct: 607 PMPISG 612

[Close]

BLAST of Lcy13g003890 vs. ExPASy TrEMBL
Match: A0A5D3CCJ6 (RuBisCO large subunit-binding protein subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00380 PE=3 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.5e-118
Identity = 225/246 (91.46%), Postives = 238/246 (96.75%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATV+RED+GLTLEKTGKEVLGSA KVVISKDSTLIVTDG+TREAVQKRV+QIQKLMENTE
Sbjct: 347 ATVVREDNGLTLEKTGKEVLGSACKVVISKDSTLIVTDGNTREAVQKRVIQIQKLMENTE 406

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           EKFPKKILNERIARLSGRIAI+QVGAQT+VELKDRQLRIEDALNASKAAIEEGVVVGGGC
Sbjct: 407 EKFPKKILNERIARLSGRIAIIQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGC 466

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
           CLLRLSTKVDAIKNVLENDEQ IGAEIFKRAL YPTKLIARNAGVNGSVVIDK+L NND+
Sbjct: 467 CLLRLSTKVDAIKNVLENDEQMIGAEIFKRALSYPTKLIARNAGVNGSVVIDKILSNNDL 526

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
           +YGYNAATD YE+LMKAGIMDPSKVVRCCLEHAASV+KTFLTSDAVVVD+KE + IPRRT
Sbjct: 527 DYGYNAATDRYENLMKAGIMDPSKVVRCCLEHAASVSKTFLTSDAVVVDMKESQLIPRRT 586

Query: 244 PMPSSG 250
           PMP SG
Sbjct: 587 PMPISG 592

[Close]

BLAST of Lcy13g003890 vs. ExPASy TrEMBL
Match: A0A1S3BEP6 (ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489212 PE=3 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.5e-118
Identity = 225/246 (91.46%), Postives = 238/246 (96.75%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATV+RED+GLTLEKTGKEVLGSA KVVISKDSTLIVTDG+TREAVQKRV+QIQKLMENTE
Sbjct: 347 ATVVREDNGLTLEKTGKEVLGSACKVVISKDSTLIVTDGNTREAVQKRVIQIQKLMENTE 406

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           EKFPKKILNERIARLSGRIAI+QVGAQT+VELKDRQLRIEDALNASKAAIEEGVVVGGGC
Sbjct: 407 EKFPKKILNERIARLSGRIAIIQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGC 466

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
           CLLRLSTKVDAIKNVLENDEQ IGAEIFKRAL YPTKLIARNAGVNGSVVIDK+L NND+
Sbjct: 467 CLLRLSTKVDAIKNVLENDEQMIGAEIFKRALSYPTKLIARNAGVNGSVVIDKILSNNDL 526

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
           +YGYNAATD YE+LMKAGIMDPSKVVRCCLEHAASV+KTFLTSDAVVVD+KE + IPRRT
Sbjct: 527 DYGYNAATDRYENLMKAGIMDPSKVVRCCLEHAASVSKTFLTSDAVVVDMKESQLIPRRT 586

Query: 244 PMPSSG 250
           PMP SG
Sbjct: 587 PMPISG 592

[Close]

BLAST of Lcy13g003890 vs. NCBI nr
Match: KAG6574020.1 (Chaperonin 60 subunit beta 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 456.8 bits (1174), Expect = 1.3e-124
Identity = 236/246 (95.93%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDG+TREAVQKRVLQIQKL+ENTE
Sbjct: 337 ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGTTREAVQKRVLQIQKLLENTE 396

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           EKFPKKILNERIARLSGRIAILQVGAQTQVELKD+QLRIEDALNASKAAIEEGVVVGGGC
Sbjct: 397 EKFPKKILNERIARLSGRIAILQVGAQTQVELKDKQLRIEDALNASKAAIEEGVVVGGGC 456

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
           CLLRLSTKVDAIKNVLEN+EQ IGAEIFKRAL YPT+LIARNAGVNGSVVIDKVLINNDM
Sbjct: 457 CLLRLSTKVDAIKNVLENEEQMIGAEIFKRALSYPTRLIARNAGVNGSVVIDKVLINNDM 516

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
           NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEP+PRRT
Sbjct: 517 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPVPRRT 576

Query: 244 PMPSSG 250
           P+P SG
Sbjct: 577 PLPISG 582

[Close]

BLAST of Lcy13g003890 vs. NCBI nr
Match: XP_022968509.1 (chaperonin 60 subunit beta 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 452.6 bits (1163), Expect = 2.5e-123
Identity = 234/246 (95.12%), Postives = 242/246 (98.37%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIREDSGLTLEKTGKEVLGSATKVVI+KDSTLIVTDG+TREAVQKRVLQIQKL+ENTE
Sbjct: 337 ATVIREDSGLTLEKTGKEVLGSATKVVITKDSTLIVTDGTTREAVQKRVLQIQKLLENTE 396

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           EKFPKKILNERIARLSGRIAILQVGAQTQVELKD+QLRIEDALNASKAAIEEGVVVGGGC
Sbjct: 397 EKFPKKILNERIARLSGRIAILQVGAQTQVELKDKQLRIEDALNASKAAIEEGVVVGGGC 456

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
           CLLRLSTKVDAIKNVLEN+EQ IGAEIFKRAL YPTKLIARNAGVNGSVVIDKVLINNDM
Sbjct: 457 CLLRLSTKVDAIKNVLENEEQMIGAEIFKRALSYPTKLIARNAGVNGSVVIDKVLINNDM 516

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
           NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVD+KEPEP PRRT
Sbjct: 517 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDMKEPEPFPRRT 576

Query: 244 PMPSSG 250
            +P+SG
Sbjct: 577 TLPNSG 582

[Close]

BLAST of Lcy13g003890 vs. NCBI nr
Match: XP_023541180.1 (chaperonin 60 subunit beta 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 452.6 bits (1163), Expect = 2.5e-123
Identity = 234/246 (95.12%), Postives = 241/246 (97.97%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIREDSGLTLEKTG EVLGSATKVVI+KDSTLIVTDG+TREAVQKRVLQIQKL+ENTE
Sbjct: 337 ATVIREDSGLTLEKTGNEVLGSATKVVITKDSTLIVTDGTTREAVQKRVLQIQKLLENTE 396

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           EKFPKKILNERIARLSGRIAILQVGAQTQVELKD+QLRIEDALNASKAAIEEGVVVGGGC
Sbjct: 397 EKFPKKILNERIARLSGRIAILQVGAQTQVELKDKQLRIEDALNASKAAIEEGVVVGGGC 456

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
           CLLRLSTKVDAIKNVLEN+EQ IGAEIFKRAL YPT+LIARNAGVNGSVVIDKVLINNDM
Sbjct: 457 CLLRLSTKVDAIKNVLENEEQMIGAEIFKRALSYPTRLIARNAGVNGSVVIDKVLINNDM 516

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
           NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEP PRRT
Sbjct: 517 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPFPRRT 576

Query: 244 PMPSSG 250
           P+P SG
Sbjct: 577 PLPISG 582

[Close]

BLAST of Lcy13g003890 vs. NCBI nr
Match: XP_038892006.1 (ruBisCO large subunit-binding protein subunit beta, chloroplastic [Benincasa hispida])

HSP 1 Score: 451.1 bits (1159), Expect = 7.3e-123
Identity = 236/261 (90.42%), Postives = 246/261 (94.25%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           A V+REDSGLTLEKTGKEVLGSA+KVVISKDSTLIVTDG+TREAV+KRVLQIQKLMENTE
Sbjct: 343 AIVVREDSGLTLEKTGKEVLGSASKVVISKDSTLIVTDGNTREAVRKRVLQIQKLMENTE 402

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           EKFPKKILNERIARLSGRIAILQVGAQT+VELKDRQLRIEDALNASKAAIEEGVVVGGGC
Sbjct: 403 EKFPKKILNERIARLSGRIAILQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGC 462

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
           CLLRLSTKVDAIKNVLENDEQ IGAEIFKRAL YPTKLIARNAGVNGSVVIDKVLINND+
Sbjct: 463 CLLRLSTKVDAIKNVLENDEQMIGAEIFKRALSYPTKLIARNAGVNGSVVIDKVLINNDL 522

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
           +YGYNAATD YEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVD+KEPEPI +RT
Sbjct: 523 DYGYNAATDRYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDMKEPEPISKRT 582

Query: 244 PMPSSGNGQTNIWAFISLISI 265
           PMP SG       +  SLISI
Sbjct: 583 PMPISGKWVNKYMSLYSLISI 603

[Close]

BLAST of Lcy13g003890 vs. NCBI nr
Match: XP_022945344.1 (chaperonin 60 subunit beta 4, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 449.9 bits (1156), Expect = 1.6e-122
Identity = 233/246 (94.72%), Postives = 241/246 (97.97%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIREDSGLTLEKTGKEVLGSATKVVI+KDSTLIVTDG+TREAVQKRVLQIQKL+ENTE
Sbjct: 337 ATVIREDSGLTLEKTGKEVLGSATKVVITKDSTLIVTDGTTREAVQKRVLQIQKLLENTE 396

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           EKFPKKILNERIARLSGRIAILQVGAQTQVELKD+QLRIEDALNASKAAIEEGVVVGGGC
Sbjct: 397 EKFPKKILNERIARLSGRIAILQVGAQTQVELKDKQLRIEDALNASKAAIEEGVVVGGGC 456

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
           CLLRLSTKVDAIKNVLEN+EQ IGAEIFKRAL YPT+LIARNAGVNGSVVIDKVLINNDM
Sbjct: 457 CLLRLSTKVDAIKNVLENEEQMIGAEIFKRALSYPTRLIARNAGVNGSVVIDKVLINNDM 516

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
           N+GYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPE  PRRT
Sbjct: 517 NFGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPESFPRRT 576

Query: 244 PMPSSG 250
           P+P SG
Sbjct: 577 PLPISG 582

[Close]

BLAST of Lcy13g003890 vs. TAIR 10
Match: AT3G13470.1 (TCP-1/cpn60 chaperonin family protein )

HSP 1 Score: 344.0 bits (881), Expect = 1.2e-94
Identity = 170/248 (68.55%), Postives = 215/248 (86.69%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIRE+ GL+L+K GKEVLG+A+KVV++K+ T IV DG+T+EAV KRV+QI+ L+E  E
Sbjct: 348 ATVIREEVGLSLDKAGKEVLGNASKVVLTKEMTTIVGDGTTQEAVNKRVVQIRNLIEQAE 407

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           + + K+ LNERIA+LSG +A++QVGAQT+ ELK+++LR+EDALNA+KAA+EEG+VVGGGC
Sbjct: 408 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 467

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
            LLRL++KVDAIK+ LENDE+++GAEI KRAL YP KLIA+NAGVNGSVV +KVL N+++
Sbjct: 468 TLLRLASKVDAIKDTLENDEEKVGAEIVKRALSYPLKLIAKNAGVNGSVVSEKVLANDNV 527

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
            +GYNAAT  YEDLM AGI+DP+KVVRCCLEHAASVAKTFL SD VVV+I EPEP+P   
Sbjct: 528 KFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIPEPEPVPAGN 587

Query: 244 PMPSSGNG 252
           PM +SG G
Sbjct: 588 PMDNSGYG 595

[Close]

BLAST of Lcy13g003890 vs. TAIR 10
Match: AT1G55490.1 (chaperonin 60 beta )

HSP 1 Score: 340.5 bits (872), Expect = 1.3e-93
Identity = 168/248 (67.74%), Postives = 216/248 (87.10%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIRE+ GL+L+K GKEVLG+A+KVV++K+++ IV DGST++AV+KRV QI+ L+E  E
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAE 411

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           + + K+ LNERIA+LSG +A++QVGAQT+ ELK+++LR+EDALNA+KAA+EEG+VVGGGC
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
            LLRL++KVDAIK  L+NDE+++GA+I KRAL YP KLIA+NAGVNGSVV +KVL N+++
Sbjct: 472 TLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNV 531

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
            +GYNAAT  YEDLM AGI+DP+KVVRCCLEHAASVAKTFL SD VVV+IKEPEP+P   
Sbjct: 532 KFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVPVGN 591

Query: 244 PMPSSGNG 252
           PM +SG G
Sbjct: 592 PMDNSGYG 599

[Close]

BLAST of Lcy13g003890 vs. TAIR 10
Match: AT1G55490.2 (chaperonin 60 beta )

HSP 1 Score: 340.5 bits (872), Expect = 1.3e-93
Identity = 168/248 (67.74%), Postives = 216/248 (87.10%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIRE+ GL+L+K GKEVLG+A+KVV++K+++ IV DGST++AV+KRV QI+ L+E  E
Sbjct: 352 ATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAE 411

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           + + K+ LNERIA+LSG +A++QVGAQT+ ELK+++LR+EDALNA+KAA+EEG+VVGGGC
Sbjct: 412 QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC 471

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
            LLRL++KVDAIK  L+NDE+++GA+I KRAL YP KLIA+NAGVNGSVV +KVL N+++
Sbjct: 472 TLLRLASKVDAIKATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNV 531

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIPRRT 243
            +GYNAAT  YEDLM AGI+DP+KVVRCCLEHAASVAKTFL SD VVV+IKEPEP+P   
Sbjct: 532 KFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVPVGN 591

Query: 244 PMPSSGNG 252
           PM +SG G
Sbjct: 592 PMDNSGYG 599

[Close]

BLAST of Lcy13g003890 vs. TAIR 10
Match: AT1G26230.1 (TCP-1/cpn60 chaperonin family protein )

HSP 1 Score: 336.3 bits (861), Expect = 2.4e-92
Identity = 171/254 (67.32%), Postives = 216/254 (85.04%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIR++ GL+LEK GKEVLG+A +V+++KDSTLIVT+G T++AV +RV QI+ L+ENTE
Sbjct: 336 ATVIRDEMGLSLEKAGKEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIENTE 395

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           E F KKILNER+ARLSG IAI+QVGA TQVELKD+QL++EDALNA+K+AIEEG+VVGGGC
Sbjct: 396 ENFQKKILNERVARLSGGIAIIQVGALTQVELKDKQLKVEDALNATKSAIEEGIVVGGGC 455

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
            LLRL+TKVD IK  L+N EQ+IGAEIFK+AL YP +LIA+NA  NG++VI+KVL N + 
Sbjct: 456 ALLRLATKVDRIKETLDNTEQKIGAEIFKKALSYPIRLIAKNADTNGNIVIEKVLSNKNT 515

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIP-RR 243
            YGYNAA + YEDLM AGI+DP+KVVRCCLEHA+SVA+TFLTSD VVV+IKE +P P   
Sbjct: 516 MYGYNAAKNQYEDLMLAGIIDPTKVVRCCLEHASSVAQTFLTSDCVVVEIKEIKPRPIIN 575

Query: 244 TPMPSSGNGQTNIW 257
            P+P+S    ++++
Sbjct: 576 PPLPTSSPATSSMF 589

[Close]

BLAST of Lcy13g003890 vs. TAIR 10
Match: AT1G26230.2 (TCP-1/cpn60 chaperonin family protein )

HSP 1 Score: 336.3 bits (861), Expect = 2.4e-92
Identity = 171/254 (67.32%), Postives = 216/254 (85.04%), Query Frame = 0


Query: 4   ATVIREDSGLTLEKTGKEVLGSATKVVISKDSTLIVTDGSTREAVQKRVLQIQKLMENTE 63
           ATVIR++ GL+LEK GKEVLG+A +V+++KDSTLIVT+G T++AV +RV QI+ L+ENTE
Sbjct: 284 ATVIRDEMGLSLEKAGKEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKNLIENTE 343

Query: 64  EKFPKKILNERIARLSGRIAILQVGAQTQVELKDRQLRIEDALNASKAAIEEGVVVGGGC 123
           E F KKILNER+ARLSG IAI+QVGA TQVELKD+QL++EDALNA+K+AIEEG+VVGGGC
Sbjct: 344 ENFQKKILNERVARLSGGIAIIQVGALTQVELKDKQLKVEDALNATKSAIEEGIVVGGGC 403

Query: 124 CLLRLSTKVDAIKNVLENDEQRIGAEIFKRALCYPTKLIARNAGVNGSVVIDKVLINNDM 183
            LLRL+TKVD IK  L+N EQ+IGAEIFK+AL YP +LIA+NA  NG++VI+KVL N + 
Sbjct: 404 ALLRLATKVDRIKETLDNTEQKIGAEIFKKALSYPIRLIAKNADTNGNIVIEKVLSNKNT 463

Query: 184 NYGYNAATDHYEDLMKAGIMDPSKVVRCCLEHAASVAKTFLTSDAVVVDIKEPEPIP-RR 243
            YGYNAA + YEDLM AGI+DP+KVVRCCLEHA+SVA+TFLTSD VVV+IKE +P P   
Sbjct: 464 MYGYNAAKNQYEDLMLAGIIDPTKVVRCCLEHASSVAQTFLTSDCVVVEIKEIKPRPIIN 523

Query: 244 TPMPSSGNGQTNIW 257
            P+P+S    ++++
Sbjct: 524 PPLPTSSPATSSMF 537

The following BLAST results are available for this feature:

BLAST of Lcy13g003890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LJE4	1.6e-93	68.55	Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
P21240	1.8e-92	67.74	Chaperonin 60 subunit beta 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q43831	2.6e-91	68.02	RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=...	[more]
Q9C667	3.4e-91	67.32	Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
P21241	6.4e-90	69.20	RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica na...	[more]

BLAST of Lcy13g003890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZU9	1.2e-123	95.12	chaperonin 60 subunit beta 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1G0R7	7.8e-123	94.72	chaperonin 60 subunit beta 4, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A0A0KWB1	3.1e-119	91.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G607990 PE=3 SV=1	[more]
A0A5D3CCJ6	1.5e-118	91.46	RuBisCO large subunit-binding protein subunit beta OS=Cucumis melo var. makuwa O...	[more]
A0A1S3BEP6	1.5e-118	91.46	ruBisCO large subunit-binding protein subunit beta, chloroplastic isoform X1 OS=...	[more]

BLAST of Lcy13g003890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574020.1	1.3e-124	95.93	Chaperonin 60 subunit beta 4, chloroplastic, partial [Cucurbita argyrosperma sub...	[more]
XP_022968509.1	2.5e-123	95.12	chaperonin 60 subunit beta 4, chloroplastic-like [Cucurbita maxima]	[more]
XP_023541180.1	2.5e-123	95.12	chaperonin 60 subunit beta 4, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_038892006.1	7.3e-123	90.42	ruBisCO large subunit-binding protein subunit beta, chloroplastic [Benincasa his...	[more]
XP_022945344.1	1.6e-122	94.72	chaperonin 60 subunit beta 4, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Lcy13g003890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13470.1	1.2e-94	68.55	TCP-1/cpn60 chaperonin family protein	[more]
AT1G55490.1	1.3e-93	67.74	chaperonin 60 beta	[more]
AT1G55490.2	1.3e-93	67.74	chaperonin 60 beta	[more]
AT1G26230.1	2.4e-92	67.32	TCP-1/cpn60 chaperonin family protein	[more]
AT1G26230.2	2.4e-92	67.32	TCP-1/cpn60 chaperonin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 45..65
None	No IPR available	PANTHER	PTHR45633:SF7	CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC	coord: 3..239
None	No IPR available	PANTHER	PTHR45633	60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL	coord: 3..239
IPR001844	Chaperonin Cpn60	PRINTS	PR00298	CHAPERONIN60	coord: 56..81 score: 33.5 coord: 104..125 score: 64.66
IPR027410	TCP-1-like chaperonin intermediate domain superfamily	GENE3D	3.30.260.10		coord: 80..116 e-value: 3.6E-77 score: 261.9
IPR027413	GroEL-like equatorial domain superfamily	GENE3D	1.10.560.10		coord: 117..231 e-value: 3.6E-77 score: 261.9
IPR027413	GroEL-like equatorial domain superfamily	SUPERFAMILY	48592	GroEL equatorial domain-like	coord: 83..233
IPR002423	Chaperonin Cpn60/TCP-1 family	PFAM	PF00118	Cpn60_TCP1	coord: 4..233 e-value: 8.2E-44 score: 150.1
IPR027409	GroEL-like apical domain superfamily	GENE3D	3.50.7.10	GroEL	coord: 3..79 e-value: 3.6E-77 score: 261.9
IPR027409	GroEL-like apical domain superfamily	SUPERFAMILY	52029	GroEL apical domain-like	coord: 3..82
IPR018370	Chaperonin Cpn60, conserved site	PROSITE	PS00296	CHAPERONINS_CPN60	coord: 111..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g003890.1	Lcy13g003890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042026	protein refolding
biological_process	GO:0006457	protein folding
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity