Lcy13g003710 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g003710
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr13: 3171506 .. 3172310 (-)
RNA-Seq ExpressionLcy13g003710
SyntenyLcy13g003710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGGAAGAAGAAAGAGAATTTGTATTGGTCAAGTATAAAGTCCTTCATTTATTGCTTACTCTTCTCTGATGGTGGAAATGCAGAGACATCCAAGGCTGCAGCATCCCCAACTGGGCCAGAGGCCGCCATGGTAGCTGCAGCAAAGCACTTCTCTTCTGCTCACAAGGTGAAGTTCAATTAAGCTTGAAGTTCATCCATGTAGCCAATCTCTACAGCAGCAAAGCAAGACCTTGGTCAAATACCCCCTGTTAAGCAAGCATTACTTCAAGATTTTCCAGTTCAATATAATGTCAGAGTAATATATTTGACATATATGATATAGCCGATGCCGATATGGTCATTTAAATACATCATTAGCACATCAATTCAGCAAGAAAAGCATCAACTGATTTAATTGTCTGTGCTGTCTATAATCATGAAGTCAACAGAATGTGTTAATTGTGCTTTTCTGGGCTAAAATTAAATACTGCAAGTCTTCATCTTATTTGCATTAGCTGTTCGTGATTTGGTTAAAGGATGGTATGCTCTTTAACCTTCAATGCTCCGGTCTACCTAGAGGCTACATATAAGATAAAAGAACAAAATTTGTTCACTCTAGACTGAAGAAATTTATAAGCAATTTTCACATGGCTAGATAATCCATCCAATGTGATTTACTAGTCCAAAACTGAAATAATTAGCAAAAGGGCACTTGTGAGGAGGACTACCACATCAATTTGATTTACACAGAGAAGCGGAACTTAAGAGTTGGATACCAGATTTTATATATTTATGGAAGCAAAAGCAATTTAACTTCTTAA

mRNA sequence

ATGGAAGGGAAGAAGAAAGAGAATTTGTATTGGTCAAGTATAAAGTCCTTCATTTATTGCTTACTCTTCTCTGATGGTGGAAATGCAGAGACATCCAAGGCTGCAGCATCCCCAACTGGGCCAGAGGCCGCCATGGTAGCTGCAGCAAAGCACTTCTCTTCTGCTCACAAGCAAAAGGGCACTTGTGAGGAGGACTACCACATCAATTTGATTTACACAGAGAAGCGGAACTTAAGAGTTGGATACCAGATTTTATATATTTATGGAAGCAAAAGCAATTTAACTTCTTAA

Coding sequence (CDS)

ATGGAAGGGAAGAAGAAAGAGAATTTGTATTGGTCAAGTATAAAGTCCTTCATTTATTGCTTACTCTTCTCTGATGGTGGAAATGCAGAGACATCCAAGGCTGCAGCATCCCCAACTGGGCCAGAGGCCGCCATGGTAGCTGCAGCAAAGCACTTCTCTTCTGCTCACAAGCAAAAGGGCACTTGTGAGGAGGACTACCACATCAATTTGATTTACACAGAGAAGCGGAACTTAAGAGTTGGATACCAGATTTTATATATTTATGGAAGCAAAAGCAATTTAACTTCTTAA

Protein sequence

MEGKKKENLYWSSIKSFIYCLLFSDGGNAETSKAAASPTGPEAAMVAAAKHFSSAHKQKGTCEEDYHINLIYTEKRNLRVGYQILYIYGSKSNLTS
Homology
[Close]
BLAST of Lcy13g003710 vs. ExPASy TrEMBL
Match: A0A0A0KT12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606890 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.2e-12
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 3  GKKKENLYWSSIKSFIYCLLFSDGGNAETSKAAASPTGPEAAMVAAAKHFSSAHK 58
          G +KENL WS IKSFI CLL  + GNA+ S AA SP+GPEAAMVAAAKHFSSAHK
Sbjct: 2  GDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPSGPEAAMVAAAKHFSSAHK 56

[Close]
BLAST of Lcy13g003710 vs. ExPASy TrEMBL
Match: A0A2P6R290 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0437271 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.6e-04
Identity = 36/58 (62.07%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 3   GKKKENLYWSSIKS-FIYCLLFSD--GGNAETSKAAASPTGPEAAMVAAAKHFSSAHK 58
           GK KE    SS+ S F +C   SD  G NA  SKA    TGPEAAMVAAAKHFSSAHK
Sbjct: 65  GKGKEESKGSSVLSPFTWCFFGSDGEGDNARGSKAV---TGPEAAMVAAAKHFSSAHK 119

[Close]
BLAST of Lcy13g003710 vs. NCBI nr
Match: KGN51999.1 (hypothetical protein Csa_008139 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 8.8e-12
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 3  GKKKENLYWSSIKSFIYCLLFSDGGNAETSKAAASPTGPEAAMVAAAKHFSSAHK 58
          G +KENL WS IKSFI CLL  + GNA+ S AA SP+GPEAAMVAAAKHFSSAHK
Sbjct: 2  GDEKENLCWSIIKSFINCLLGLNDGNADASNAAVSPSGPEAAMVAAAKHFSSAHK 56

[Close]
BLAST of Lcy13g003710 vs. NCBI nr
Match: KAG6574028.1 (hypothetical protein SDJN03_27915, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 4.1e-09
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 8  NLYWSSIKSFIYCLLFSDGGNAETSKAAAS------PTGPEAAMVAAAKHFSSAHK 58
          NL WS++KSFIYCLL  +GG+ E + AAA+      PTGPEAAMVAAAKHFSSAHK
Sbjct: 2  NLIWSTLKSFIYCLLGFNGGSPEAAMAAAAAAAPSPPTGPEAAMVAAAKHFSSAHK 57

The following BLAST results are available for this feature:
BLAST of Lcy13g003710 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g003710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT124.2e-1274.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606890 PE=4 SV=1[more]
A0A2P6R2905.6e-0462.07Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0437271 PE=4... [more]
BLAST of Lcy13g003710 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51999.18.8e-1274.55hypothetical protein Csa_008139 [Cucumis sativus][more]
KAG6574028.14.1e-0967.86hypothetical protein SDJN03_27915, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy13g003710 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g003710.1Lcy13g003710.1mRNA