Lcy13g003680 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g003680
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr13: 3160531 .. 3161993 (+)
RNA-Seq Expression	Lcy13g003680
Synteny	Lcy13g003680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATACTGTTTTGTGTTTCTCTCGTTATTCTTTTGATACCTTCTGCGTGCTCTCATGCTCTGGGTCAGTCTTCTCCCTTGCAAGGTGTATATACTTGTCTTGTCTCTCTTCTTTTTCTTCTTCTTCTTCTTTCTCTCTGAGAATAATGGAGTTATTTGTGATCTTGCAGCAACTGAAGTGGTGCGTTCTACTAGTTTTGTTCAATCTAGGAAGTTCAAACTGACGGAAGAAGCAAGAGTGAGTGTGAAGGTGTGTTTGAGAGTGCTTTTAAATTAGTGATTTTGACACAAGTACTTTCAGTAAAGTATACTTCAGTAAAAAGTAATCATTTTTATCTTTGTTTCCATTCTCTTAATAGTGCCTTTTAATGTTTCCTTGACAATCACTCAAGTTAAAAGTGCATTACTATACTAGTGCTTCCTCACTAAGCTTTTCATTTCAAAAGCATTTGTTTTAAACTTTCAAACATAATGAGTTTGAATGGAAGTGCTTCTGATCAGGTGATTTTAGCCATGTCAAAAACATTCACAAACATAGCCTTAATCCCCAACTCTTCTAACCCATTTCGCCATTGTTATATCTATCTTGTTGCTCTGCTGTTCACGTTGTGATGATCACTGATGACTTTCCTGGAATCAGGTTGAAGCTCACGGATTCCAAGTTCCTAAACAAAAAGACAAGCACAAGGAAAAAGTTTCAGGTGATTACTACATTATCTTGGAAAGAAAATCCAAAAATATGCAAGTTCTTGAATTATTAACTTCTGCAAATTAGTCGTCCCTGTCATGTCTGTAATCTTGCCAGTTGCCATTTCTTTGTCTGAAAACTGCAACAAGAATGCTTCCTTGAAGATGGAAAATTTGAGGAGTTGCCATATTTGAGTAACACCACATTAAAATAAAAAACTTAAGTACTTTCTTTTCACATTTTAGATATATATCTGCACTTTCAGATGCTTGCCCTGCTATTATTTTTATCAAATCACCTTTAATTCATTCCCCCTTTTGGCTACTGTCCATTTAAAAATACCTCACCATTCAAAATCAAAAACATTTGAGGTGAAAAGATTAAAACATTTGACCTCTTGGTCGAAAATACATGTCAATTACTGCTGAACTATGTTTGCTTTGACATTTGCCAACAGTGCATTGATACGATAGTTAAGTCTCGATTTATATTATTGTATATTGGATTTGAATGAATCCATTATTATAATAACATGATTTAATTAAATAAATGTATTTGAGATATGGGTTTTAGAAAAAGGGAATTAATATAATTGCAACATTTATTTACAGGCCAGGCTTATAAAAGGGAGCAAAATGGAATGAAATTAAGCAGAGGGAAAGGAAGAAAGTGGGTGAACGTGGCCGACATGTCGTCACCGTTCTTCACAATGGACTATGCTCACATAAGACGACGTCGTCCTGTACATAACATGTCGCTCCAGCGTCCTTGA

mRNA sequence

ATGGCCATACTGTTTTGTGTTTCTCTCGTTATTCTTTTGATACCTTCTGCGTGCTCTCATGCTCTGGGTCAGTCTTCTCCCTTGCAAGCAACTGAAGTGGTGCGTTCTACTAGTTTTGTTCAATCTAGGAAGTTCAAACTGACGGAAGAAGCAAGAGTGAGTGTGAAGGTTGAAGCTCACGGATTCCAAGTTCCTAAACAAAAAGACAAGCACAAGGAAAAAGTTTCAGGCCAGGCTTATAAAAGGGAGCAAAATGGAATGAAATTAAGCAGAGGGAAAGGAAGAAAGTGGGTGAACGTGGCCGACATGTCGTCACCGTTCTTCACAATGGACTATGCTCACATAAGACGACGTCGTCCTGTACATAACATGTCGCTCCAGCGTCCTTGA

Coding sequence (CDS)

ATGGCCATACTGTTTTGTGTTTCTCTCGTTATTCTTTTGATACCTTCTGCGTGCTCTCATGCTCTGGGTCAGTCTTCTCCCTTGCAAGCAACTGAAGTGGTGCGTTCTACTAGTTTTGTTCAATCTAGGAAGTTCAAACTGACGGAAGAAGCAAGAGTGAGTGTGAAGGTTGAAGCTCACGGATTCCAAGTTCCTAAACAAAAAGACAAGCACAAGGAAAAAGTTTCAGGCCAGGCTTATAAAAGGGAGCAAAATGGAATGAAATTAAGCAGAGGGAAAGGAAGAAAGTGGGTGAACGTGGCCGACATGTCGTCACCGTTCTTCACAATGGACTATGCTCACATAAGACGACGTCGTCCTGTACATAACATGTCGCTCCAGCGTCCTTGA

Protein sequence

MAILFCVSLVILLIPSACSHALGQSSPLQATEVVRSTSFVQSRKFKLTEEARVSVKVEAHGFQVPKQKDKHKEKVSGQAYKREQNGMKLSRGKGRKWVNVADMSSPFFTMDYAHIRRRRPVHNMSLQRP

Homology

[Close]

BLAST of Lcy13g003680 vs. ExPASy TrEMBL
Match: A0A6J1GWC1 (uncharacterized protein LOC111458171 OS=Cucurbita moschata OX=3662 GN=LOC111458171 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.9e-37
Identity = 92/129 (71.32%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MAILFCVSLVILLIPSACSHALGQSSPLQATEVVRSTSFVQSRKFKLTEEARVSVKVEAH 60
           MA+L CVSL+IL +P A SHAL QSSPLQATE V S   V SRKFK+ EEA+V   VEAH
Sbjct: 6   MAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKV---VEAH 65

Query: 61  GFQVPKQKDKHKEKVSGQAYKREQNGMKLSRGKGRKWVNVADMSSPFFTMDYAHIRRRRP 120
           GFQ  KQ+D+ KE VSGQAYKRE+N     +GKGRKW NVADMSS FFTMDYAHI+RRRP
Sbjct: 66  GFQASKQEDEQKETVSGQAYKREEN-----KGKGRKWGNVADMSSRFFTMDYAHIKRRRP 125

Query: 121 VHNMSLQRP 130
           VHNMS QRP
Sbjct: 126 VHNMSRQRP 126

[Close]

BLAST of Lcy13g003680 vs. ExPASy TrEMBL
Match: A0A0A0KWA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606860 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.7e-37
Identity = 93/130 (71.54%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 1   MAILFCVSLVILLIPSACSHALGQSSPLQATEVVRSTSFVQSRKFKLTEE-ARVSVKVEA 60
           MAIL CVS+++LLIPSA SHAL QSSPLQATE V S   V  RKFK+ EE ARV  KVEA
Sbjct: 6   MAILCCVSILVLLIPSASSHALDQSSPLQATEGVHS-PLVLGRKFKMLEEAARVDKKVEA 65

Query: 61  HGFQVPKQKDKHKEKVSGQAYKREQNGMKLSRGKGRKWVNVADMSSPFFTMDYAHIRRRR 120
            GFQV KQKD HKE VSGQ    E+ G KL++GKGRKWV VADMSS  FTMDYAH++RRR
Sbjct: 66  QGFQVAKQKDNHKENVSGQ----EEQGTKLNKGKGRKWVKVADMSSQIFTMDYAHLKRRR 125

Query: 121 PVHNMSLQRP 130
           PVHNMSL+RP
Sbjct: 126 PVHNMSLKRP 130

[Close]

BLAST of Lcy13g003680 vs. ExPASy TrEMBL
Match: A0A6J1IR14 (uncharacterized protein LOC111477668 OS=Cucurbita maxima OX=3661 GN=LOC111477668 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.2e-35
Identity = 89/129 (68.99%), Postives = 99/129 (76.74%), Query Frame = 0


Query: 1   MAILFCVSLVILLIPSACSHALGQSSPLQATEVVRSTSFVQSRKFKLTEEARVSVKVEAH 60
           MA+L CVSL+IL +P A SHAL QSSPLQ TE V S   V SRKFK+ EEA+V   VEAH
Sbjct: 6   MAMLCCVSLLILSVPFASSHALDQSSPLQETEAVHSPRLVLSRKFKMLEEAKV---VEAH 65

Query: 61  GFQVPKQKDKHKEKVSGQAYKREQNGMKLSRGKGRKWVNVADMSSPFFTMDYAHIRRRRP 120
           GFQ  KQ+D+ KE VSGQ YKRE+N     +GKGRKW NVADMSS F TMDYAHI+RRRP
Sbjct: 66  GFQASKQEDEQKENVSGQPYKREEN-----KGKGRKWGNVADMSSRFLTMDYAHIKRRRP 125

Query: 121 VHNMSLQRP 130
           VHNMS QRP
Sbjct: 126 VHNMSRQRP 126

[Close]

BLAST of Lcy13g003680 vs. ExPASy TrEMBL
Match: A0A5D3CCI7 (Putative root meristem growth factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00260 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.1e-34
Identity = 89/130 (68.46%), Postives = 99/130 (76.15%), Query Frame = 0


Query: 1   MAILFCVSLVILLIPSACSHALGQSSPLQATEVVRSTSFVQSRKFK-LTEEARVSVKVEA 60
           MAIL CVS++ILLIPSA SHAL QSSPLQATE V S   V  RKFK L E AR+  +VE 
Sbjct: 6   MAILCCVSILILLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLKEAARLDKRVET 65

Query: 61  HGFQVPKQKDKHKEKVSGQAYKREQNGMKLSRGKGRKWVNVADMSSPFFTMDYAHIRRRR 120
            GFQV KQ D HKE VSG+    E+ GMKL++ KGRK VNVADMSS  FTMDYAH++RRR
Sbjct: 66  QGFQVAKQNDNHKENVSGE----EEKGMKLNKRKGRKGVNVADMSSQIFTMDYAHLKRRR 125

Query: 121 PVHNMSLQRP 130
           PVHNMSL RP
Sbjct: 126 PVHNMSLNRP 131

[Close]

BLAST of Lcy13g003680 vs. ExPASy TrEMBL
Match: A0A6J1D6T9 (uncharacterized protein LOC111017571 OS=Momordica charantia OX=3673 GN=LOC111017571 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.3e-32
Identity = 87/129 (67.44%), Postives = 95/129 (73.64%), Query Frame = 0


Query: 1   MAILFCVSLVILLIPSACSHALGQSSPLQATEVVRSTSFVQSRKFKLTEEARVSVKVEAH 60
           MA L CVSL+ILLIP A SHAL QS  LQATE VR   F  +RKF+L EEA     V+AH
Sbjct: 6   MASLCCVSLLILLIPYASSHALEQSFHLQATEAVR---FRPTRKFRLMEEAGA---VKAH 65

Query: 61  GFQVPKQKDKHKEKVSGQAYKREQNGMKLSRGKGRKWVNVADMSSPFFTMDYAHIRRRRP 120
           G  VP Q D H++ VSGQ YKREQ GM LSR KGRKW++V DMSS FFTMDY H RRRRP
Sbjct: 66  GSPVPIQNDNHEDNVSGQPYKREQKGMNLSRRKGRKWLDVDDMSSRFFTMDYVHTRRRRP 125

Query: 121 VHNMSLQRP 130
           VHNMS QRP
Sbjct: 126 VHNMSRQRP 128

[Close]

BLAST of Lcy13g003680 vs. NCBI nr
Match: XP_022956442.1 (uncharacterized protein LOC111458171 [Cucurbita moschata] >KAG7032145.1 hypothetical protein SDJN02_06188 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.1 bits (414), Expect = 8.1e-37
Identity = 92/129 (71.32%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MAILFCVSLVILLIPSACSHALGQSSPLQATEVVRSTSFVQSRKFKLTEEARVSVKVEAH 60
           MA+L CVSL+IL +P A SHAL QSSPLQATE V S   V SRKFK+ EEA+V   VEAH
Sbjct: 6   MAMLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKV---VEAH 65

Query: 61  GFQVPKQKDKHKEKVSGQAYKREQNGMKLSRGKGRKWVNVADMSSPFFTMDYAHIRRRRP 120
           GFQ  KQ+D+ KE VSGQAYKRE+N     +GKGRKW NVADMSS FFTMDYAHI+RRRP
Sbjct: 66  GFQASKQEDEQKETVSGQAYKREEN-----KGKGRKWGNVADMSSRFFTMDYAHIKRRRP 125

Query: 121 VHNMSLQRP 130
           VHNMS QRP
Sbjct: 126 VHNMSRQRP 126

[Close]

BLAST of Lcy13g003680 vs. NCBI nr
Match: KAE8648772.1 (hypothetical protein Csa_008620 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-36
Identity = 93/130 (71.54%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 1   MAILFCVSLVILLIPSACSHALGQSSPLQATEVVRSTSFVQSRKFKLTEE-ARVSVKVEA 60
           MAIL CVS+++LLIPSA SHAL QSSPLQATE V S   V  RKFK+ EE ARV  KVEA
Sbjct: 1   MAILCCVSILVLLIPSASSHALDQSSPLQATEGVHS-PLVLGRKFKMLEEAARVDKKVEA 60

Query: 61  HGFQVPKQKDKHKEKVSGQAYKREQNGMKLSRGKGRKWVNVADMSSPFFTMDYAHIRRRR 120
            GFQV KQKD HKE VSGQ    E+ G KL++GKGRKWV VADMSS  FTMDYAH++RRR
Sbjct: 61  QGFQVAKQKDNHKENVSGQ----EEQGTKLNKGKGRKWVKVADMSSQIFTMDYAHLKRRR 120

Query: 121 PVHNMSLQRP 130
           PVHNMSL+RP
Sbjct: 121 PVHNMSLKRP 125

[Close]

BLAST of Lcy13g003680 vs. NCBI nr
Match: XP_022977309.1 (uncharacterized protein LOC111477668 [Cucurbita maxima])

HSP 1 Score: 158.3 bits (399), Expect = 4.4e-35
Identity = 89/129 (68.99%), Postives = 99/129 (76.74%), Query Frame = 0


Query: 1   MAILFCVSLVILLIPSACSHALGQSSPLQATEVVRSTSFVQSRKFKLTEEARVSVKVEAH 60
           MA+L CVSL+IL +P A SHAL QSSPLQ TE V S   V SRKFK+ EEA+V   VEAH
Sbjct: 6   MAMLCCVSLLILSVPFASSHALDQSSPLQETEAVHSPRLVLSRKFKMLEEAKV---VEAH 65

Query: 61  GFQVPKQKDKHKEKVSGQAYKREQNGMKLSRGKGRKWVNVADMSSPFFTMDYAHIRRRRP 120
           GFQ  KQ+D+ KE VSGQ YKRE+N     +GKGRKW NVADMSS F TMDYAHI+RRRP
Sbjct: 66  GFQASKQEDEQKENVSGQPYKREEN-----KGKGRKWGNVADMSSRFLTMDYAHIKRRRP 125

Query: 121 VHNMSLQRP 130
           VHNMS QRP
Sbjct: 126 VHNMSRQRP 126

[Close]

BLAST of Lcy13g003680 vs. NCBI nr
Match: KAG6601362.1 (hypothetical protein SDJN03_06595, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-34
Identity = 88/127 (69.29%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 3   ILFCVSLVILLIPSACSHALGQSSPLQATEVVRSTSFVQSRKFKLTEEARVSVKVEAHGF 62
           +L CVSL+IL +P A SHAL QSSPLQATE V S   V SRKFK+ EEA+V   VEAH F
Sbjct: 1   MLCCVSLLILSVPFASSHALDQSSPLQATEAVHSPRLVLSRKFKMLEEAKV---VEAHRF 60

Query: 63  QVPKQKDKHKEKVSGQAYKREQNGMKLSRGKGRKWVNVADMSSPFFTMDYAHIRRRRPVH 122
           Q  KQ+D+ KE VSGQAYKRE+N     +GKGRKW N+ADMSS FFTMDYAHI+RRRPVH
Sbjct: 61  QASKQEDEQKETVSGQAYKREEN-----KGKGRKWGNMADMSSRFFTMDYAHIKRRRPVH 119

Query: 123 NMSLQRP 130
           NMS QRP
Sbjct: 121 NMSRQRP 119

[Close]

BLAST of Lcy13g003680 vs. NCBI nr
Match: KAA0034486.1 (putative root meristem growth factor 8 [Cucumis melo var. makuwa] >TYK09040.1 putative root meristem growth factor 8 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 2.2e-34
Identity = 89/130 (68.46%), Postives = 99/130 (76.15%), Query Frame = 0


Query: 1   MAILFCVSLVILLIPSACSHALGQSSPLQATEVVRSTSFVQSRKFK-LTEEARVSVKVEA 60
           MAIL CVS++ILLIPSA SHAL QSSPLQATE V S   V  RKFK L E AR+  +VE 
Sbjct: 6   MAILCCVSILILLIPSASSHALDQSSPLQATEAVHSPRLVLGRKFKMLKEAARLDKRVET 65

Query: 61  HGFQVPKQKDKHKEKVSGQAYKREQNGMKLSRGKGRKWVNVADMSSPFFTMDYAHIRRRR 120
            GFQV KQ D HKE VSG+    E+ GMKL++ KGRK VNVADMSS  FTMDYAH++RRR
Sbjct: 66  QGFQVAKQNDNHKENVSGE----EEKGMKLNKRKGRKGVNVADMSSQIFTMDYAHLKRRR 125

Query: 121 PVHNMSLQRP 130
           PVHNMSL RP
Sbjct: 126 PVHNMSLNRP 131

The following BLAST results are available for this feature:

BLAST of Lcy13g003680 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g003680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GWC1	3.9e-37	71.32	uncharacterized protein LOC111458171 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]
A0A0A0KWA1	8.7e-37	71.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606860 PE=4 SV=1	[more]
A0A6J1IR14	2.2e-35	68.99	uncharacterized protein LOC111477668 OS=Cucurbita maxima OX=3661 GN=LOC111477668...	[more]
A0A5D3CCI7	1.1e-34	68.46	Putative root meristem growth factor 8 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1D6T9	1.3e-32	67.44	uncharacterized protein LOC111017571 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Lcy13g003680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956442.1	8.1e-37	71.32	uncharacterized protein LOC111458171 [Cucurbita moschata] >KAG7032145.1 hypothet...	[more]
KAE8648772.1	1.8e-36	71.54	hypothetical protein Csa_008620 [Cucumis sativus]	[more]
XP_022977309.1	4.4e-35	68.99	uncharacterized protein LOC111477668 [Cucurbita maxima]	[more]
KAG6601362.1	1.3e-34	69.29	hypothetical protein SDJN03_06595, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0034486.1	2.2e-34	68.46	putative root meristem growth factor 8 [Cucumis melo var. makuwa] >TYK09040.1 pu...	[more]

BLAST of Lcy13g003680 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g003680.1	Lcy13g003680.1	mRNA