Lcy13g003620 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g003620
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description(thale cress) hypothetical protein
LocationChr13: 3023930 .. 3027037 (+)
RNA-Seq ExpressionLcy13g003620
SyntenyLcy13g003620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAATGCAGCTGCATTTGTGAGTGCTGTTATCGGAATTGCTTCGATTATCATGTCCGTGGCTTCTCTGATGAGTGGCAAAGGGAAGATGATGAAAGCTCCTGGAGCTGATGGCTATATTTTCAGAGATGTGTTTGAGCGCGATCCTGCTGCCTATTTCAGAAACCTTCACAAGCACTAAAATGGAAAATCTAATGCCCCTTTTGGTGTATTATCTTTTTAATCTACTTACGCTATGAATAAACAAAAAAAAAAAAAAAAAAAATGGTCTATTTTAGTTAACTCTCTCTCTTTCTCTTTCTTTTGCTCTTTTTTATTTCTTCAATTTCTTTCAATTATCGAGTTCTGAGAAAGAAAAAGGGAAAAGAATGATACTTTGATAACTATTTGTTGTGGCCATGAGAATCCCAGGTTATATTTTCTTTTCTTTTTGGTATTTTAAAGATGAAAAGAACTTGTTGATAAATAGAGATAAAAGGTATCCAAAAAAATAAAAGAGAGATAAAGAGGGGTTTTTTTTCTTCTATCAATGTTGAGAGATTTCATTAGTACAAACTTTATAAGTCAGATTAACTATATGCTGTTCGCTTGCAAGTTTTAGGAAAAGAGGAAAATCAAAACTTTGTCATATATGTTTGGCCAGTTTGGCTTTCTTTCTCTTGTTGTTAGCTATTTAAATGTAATAAATTGTATAGGCTTGTATAGAAACAATATAATCCAAAATTTCAATTTTGCGTCTAATAGATCTTTAAAGTTCAAGTGTCTGATTGATCATTCTTTCGATTTTTTTTTTACTCCTATCTTTATTGATGATGAAATAAAAACGAGGTTTGTCCTTATTGCGTTGTATTGATATATGCTCATTTTCCCTTTCTTTATAATAGTTGGTCCTTCTTTCTCTTGTTGTTAGCTGCTTAACGCTTGTTTCTGTCTTAGGTTAATTTATATAATTAAATTAGTGTCTTTTTCTCATAATAGTTGGTCCTTCTTTCCTGCTTTCAAAAAAAAAAAAAAAAAAGTTGGCCCATCAAAGGTACATGCTAATTAACGTTAGACTAGGCTTGCTTTGGCTATTCTCATTTAATTTATATATAATTAAAATGGGGGAAGTACTTAGCGTCTCTTTTTCTTCCATTATTGGATTGGAAAATGAAATACGGTTTTGTCATTTCCAATAGTAACTTTTATTTTTCCATAACACCACACTTTTCATTCATTCAACATCAAATAATTCAGTAGAAATTTTGTTTTACTATCATTAAATTTAACATGTACTCACCCTACATTGAACGTTGGGTTCGAATTTAACTTTTTTTTCGTTTGGATTATAATAAATACATTTTGTTATGAGTGCCGATGTTGATATATATCTTAATTTTATGAAAACCCGCCAACAAGAGCATAGTTCAACTAGCATAAAGTTGTAATTGATAATCACGAGATCTGTGGTTCGAATCCCCCCACCTTCATGTTATCAAAAAAAAAAAAAAAAAAATTTATGAAAACCCAAAAACTTTTTAGGTTAATTTTAGTAATTTCTCAATTGAAGTCTTCACTCCATCGTGTTTTGAAAAAATAATAAGGAAAAAAATAGTAGCTTCCCATTGCACCGTTGATATTATGACGGTTTATTTACTAGATATTATCAGCCTCTTTTTCTTCATTTATTGAATTGGAAAATGAAATTGGGTTTAGTCATTTCCAATATTAATTTTTATTTTCCACACACTTCTCATCATTAAAATAATGGTTAAAATATTATTTTAGTTATTATACTTTGGAGTTCATTTAATTTTAGTTCCTTTATTTTCAAATGTCCATTTTAGTTGATGTACGTTGAATAAAGCTTAGAAATGATTCATATCGTTAATTTGAAGTTGGTTTTTATCGAAATTGGGATTGGATAATCATAATAATTTTTATATAAAAAAAGAAAAAAAGAATAAGACATAATGTGAACATATTTCCATCAAAACTAATATGTTTAAAGAAAAGTTAAACAATAAACGAAAAATAGGGACCAATTTTAAGCCTTATTCAAAGTAGAGAGACTAAATTAAACATTTGAAACTTGAAAGTATAAGGATTAAAATGAAATGAAATTAATCTTATTTCAAAAAAAAAAAAAATGAAAAATCTAAATTACAAGAACCAAAATTGATATTTTAACCTAAAATAATTTATTTATAAATTTTTTCACTACCATAAATTTAACATGTACTCGACCATACATAAATTGTTGAGTTAAATCGTAAATTTAATCTTTAAATTTTGATAATTATATCTATTTAATACCAAAAATTTGAAAATAATTTTTGGTTTGTATTCTAATAAATACATTTTGTTGACACAAGTGCAAACTCACCTCAATTTTATGAAAATATCAATTAGAAATAAGTGATATAATTTATATGTCAATTAATGTTTCTAAATAAATGTTCCGAAATTGAAAATTTTATTAAAATATTTTAATCAATAAATAAACATTTCACCCTTTAAATATCATCTTCACATCACTAAAAATCTATTCATAATTCTGTTATACTTGATCGATTTTTCTGGGAATGAAAATGTTGATTATTATTCCCTTTAGTTTATAGACTCTTTTACTGGCAGTATCAAATTTTTTGTTCGACTTTAATTTGAAGGAAAAATTTCAATAGTTTCAATTGAAAACACATTTTTACATAATTTTAATTAAAAAAAACCTAAGAATTAATTATAAATAAACACAAGCCCCAAAACAAATGAACTTGGAGGGTACACAAATCAAGAAGGGTCCTTAATTGGAATTGAATTAGTTTAAACTCTTCGAATTCTCCATAATCTTGTCCTCTCTATATAAATCAATCCGCCACTGTGGGCTGTTTAATTATTATCAAACTCAATTGTAATTTTGAAGTCTGAAAATTATAGGCAAAAAATGGTGAATGCAACTGCAATTGCGAGTGCTGTGGTCGGAATTGCTTGGTTTATTCTGTCGGTTACTTCCTTGGAGAGTGGCAAGAGGAAGACGATGAAAGCTCCTGGAGCTGATGGCCATATTTTCAGAGATAACTTTGACCGCGATCCTAAGGCATATTTCAGAAACCTTCGCAACCACTAA

mRNA sequence

ATGGCGAATGCAGCTGCATTTGTGAGTGCTGTTATCGGAATTGCTTCGATTATCATGTCCGTGGCTTCTCTGATGAGTGGCAAAGGGAAGATGATGAAAGCTCCTGGAGCTGATGGCTATATTTTCAGAGATGTGCAAAAAATGGTGAATGCAACTGCAATTGCGAGTGCTGTGGTCGGAATTGCTTGGTTTATTCTGTCGGTTACTTCCTTGGAGAGTGGCAAGAGGAAGACGATGAAAGCTCCTGGAGCTGATGGCCATATTTTCAGAGATAACTTTGACCGCGATCCTAAGGCATATTTCAGAAACCTTCGCAACCACTAA

Coding sequence (CDS)

ATGGCGAATGCAGCTGCATTTGTGAGTGCTGTTATCGGAATTGCTTCGATTATCATGTCCGTGGCTTCTCTGATGAGTGGCAAAGGGAAGATGATGAAAGCTCCTGGAGCTGATGGCTATATTTTCAGAGATGTGCAAAAAATGGTGAATGCAACTGCAATTGCGAGTGCTGTGGTCGGAATTGCTTGGTTTATTCTGTCGGTTACTTCCTTGGAGAGTGGCAAGAGGAAGACGATGAAAGCTCCTGGAGCTGATGGCCATATTTTCAGAGATAACTTTGACCGCGATCCTAAGGCATATTTCAGAAACCTTCGCAACCACTAA

Protein sequence

MANAAAFVSAVIGIASIIMSVASLMSGKGKMMKAPGADGYIFRDVQKMVNATAIASAVVGIAWFILSVTSLESGKRKTMKAPGADGHIFRDNFDRDPKAYFRNLRNH
Homology
[Close]
BLAST of Lcy13g003620 vs. ExPASy TrEMBL
Match: A0A5D3CFA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00220 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 50  NATAIASAVVGIAWFILSVTSLESGKRKTMKAPGADGHIFRDNFDRDPKAYFRNLRN 107
           N TAI   VVG+A  ++SV SL SG  K MKAPG DG+I R  F+++P AYFRNLR+
Sbjct: 5   NLTAIIGGVVGVASLVVSVASLMSGNPKMMKAPGKDGYIPRAAFEKNPAAYFRNLRS 61

[Close]
BLAST of Lcy13g003620 vs. ExPASy TrEMBL
Match: A0A314YHD1 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_31553 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 44  DVQKMVNATAIASAVVGIAWFILSVTSLESGKRKTMKAPGADGHIFRDNFDRDPKAYFRN 103
           DV  +V A A+A A + +  F LS     SG+R+TMKAPG D  IFRD+F+RDP AYFR+
Sbjct: 31  DVSNLVIA-AVAVAGLALLGFGLSGLFSGSGQRRTMKAPGRDSRIFRDDFERDPSAYFRD 90

Query: 104 LR 106
           LR
Sbjct: 91  LR 91

[Close]
BLAST of Lcy13g003620 vs. ExPASy TrEMBL
Match: A0A314XIC4 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_09758 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 44  DVQKMVNATAIASAVVGIAWFILSVTSLESGKRKTMKAPGADGHIFRDNFDRDPKAYFRN 103
           DV  +V A A+A A + +  F LS     SG+R+TMKAPG D  IFRD+F+RDP AYFR+
Sbjct: 31  DVSNLVIA-AVAVAGLALLGFGLSGLFSGSGQRRTMKAPGRDSRIFRDDFERDPSAYFRD 90

Query: 104 LR 106
           LR
Sbjct: 91  LR 91

[Close]
BLAST of Lcy13g003620 vs. ExPASy TrEMBL
Match: A0A6J5TMN1 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS6767 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.1e-06
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 44  DVQKMVNATAIASAVVGIAWFILSVTSLESGKRKTMKAPGADGHIFRDNFDRDPKAYFRN 103
           DV  +V A A+A A +G+  F LS     SG+R+TMKAPG D  IFRD F+R+P AYFR+
Sbjct: 30  DVSNLVIA-ALAVAGLGLLGFGLSGLFSGSGQRRTMKAPGRDSRIFRDVFERNPSAYFRD 89

Query: 104 LR 106
           LR
Sbjct: 90  LR 90

[Close]
BLAST of Lcy13g003620 vs. ExPASy TrEMBL
Match: A0A2Z7AFZ8 (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_31801 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.6e-06
Identity = 25/64 (39.06%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 43  RDVQKMVNATAIASAVVGIAWFILSVTSLESGKRKTMKAPGADGHIFRDNFDRDPKAYFR 102
           ++ +KM+   A+ + +   AW +  +      +RKTMKAPG +  IFRD+F+RDP  +FR
Sbjct: 16  QEAEKMIKKIAVVAGISLAAWGLFKLVDASESERKTMKAPGRNYRIFRDDFERDPALHFR 75

Query: 103 NLRN 107
           +LR+
Sbjct: 76  SLRD 79

[Close]
BLAST of Lcy13g003620 vs. NCBI nr
Match: KAA0034482.1 (hypothetical protein E6C27_scaffold65G004940 [Cucumis melo var. makuwa] >TYK09036.1 hypothetical protein E5676_scaffold475G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-07
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 50  NATAIASAVVGIAWFILSVTSLESGKRKTMKAPGADGHIFRDNFDRDPKAYFRNLRN 107
           N TAI   VVG+A  ++SV SL SG  K MKAPG DG+I R  F+++P AYFRNLR+
Sbjct: 5   NLTAIIGGVVGVASLVVSVASLMSGNPKMMKAPGKDGYIPRAAFEKNPAAYFRNLRS 61

[Close]
BLAST of Lcy13g003620 vs. NCBI nr
Match: PQQ04531.1 (hypothetical protein Pyn_31553 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-06
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 44  DVQKMVNATAIASAVVGIAWFILSVTSLESGKRKTMKAPGADGHIFRDNFDRDPKAYFRN 103
           DV  +V A A+A A + +  F LS     SG+R+TMKAPG D  IFRD+F+RDP AYFR+
Sbjct: 31  DVSNLVIA-AVAVAGLALLGFGLSGLFSGSGQRRTMKAPGRDSRIFRDDFERDPSAYFRD 90

Query: 104 LR 106
           LR
Sbjct: 91  LR 91

[Close]
BLAST of Lcy13g003620 vs. NCBI nr
Match: PQP91685.1 (hypothetical protein Pyn_09758 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 62.0 bits (149), Expect = 3.6e-06
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 44  DVQKMVNATAIASAVVGIAWFILSVTSLESGKRKTMKAPGADGHIFRDNFDRDPKAYFRN 103
           DV  +V A A+A A + +  F LS     SG+R+TMKAPG D  IFRD+F+RDP AYFR+
Sbjct: 31  DVSNLVIA-AVAVAGLALLGFGLSGLFSGSGQRRTMKAPGRDSRIFRDDFERDPSAYFRD 90

Query: 104 LR 106
           LR
Sbjct: 91  LR 91

[Close]
BLAST of Lcy13g003620 vs. NCBI nr
Match: CAB4264824.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-05
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 44  DVQKMVNATAIASAVVGIAWFILSVTSLESGKRKTMKAPGADGHIFRDNFDRDPKAYFRN 103
           DV  +V A A+A A +G+  F LS     SG+R+TMKAPG D  IFRD F+R+P AYFR+
Sbjct: 30  DVSNLVIA-ALAVAGLGLLGFGLSGLFSGSGQRRTMKAPGRDSRIFRDVFERNPSAYFRD 89

Query: 104 LR 106
           LR
Sbjct: 90  LR 90

[Close]
BLAST of Lcy13g003620 vs. NCBI nr
Match: KZV20586.1 (hypothetical protein F511_31801 [Dorcoceras hygrometricum])

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-05
Identity = 25/64 (39.06%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 43  RDVQKMVNATAIASAVVGIAWFILSVTSLESGKRKTMKAPGADGHIFRDNFDRDPKAYFR 102
           ++ +KM+   A+ + +   AW +  +      +RKTMKAPG +  IFRD+F+RDP  +FR
Sbjct: 16  QEAEKMIKKIAVVAGISLAAWGLFKLVDASESERKTMKAPGRNYRIFRDDFERDPALHFR 75

Query: 103 NLRN 107
           +LR+
Sbjct: 76  SLRD 79

The following BLAST results are available for this feature:
BLAST of Lcy13g003620 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy13g003620 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CFA61.2e-0757.89Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A314YHD11.7e-0654.84Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_315... [more]
A0A314XIC41.7e-0654.84Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_097... [more]
A0A6J5TMN15.1e-0654.84Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS6767 PE=4 SV... [more]
A0A2Z7AFZ88.6e-0639.06Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_31801 PE=4... [more]
BLAST of Lcy13g003620 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034482.12.5e-0757.89hypothetical protein E6C27_scaffold65G004940 [Cucumis melo var. makuwa] >TYK0903... [more]
PQQ04531.13.6e-0654.84hypothetical protein Pyn_31553 [Prunus yedoensis var. nudiflora][more]
PQP91685.13.6e-0654.84hypothetical protein Pyn_09758 [Prunus yedoensis var. nudiflora][more]
CAB4264824.11.0e-0554.84unnamed protein product [Prunus armeniaca][more]
KZV20586.11.8e-0539.06hypothetical protein F511_31801 [Dorcoceras hygrometricum][more]
BLAST of Lcy13g003620 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039926Protein egg apparatus-1PANTHERPTHR33333ERYTHROCYTE MEMBRANE PROTEIN 1-LIKEcoord: 51..106
NoneNo IPR availablePANTHERPTHR33333:SF2EXPRESSED PROTEINcoord: 51..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g003620.1Lcy13g003620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane