Lcy13g003120 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g003120
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	50S ribosomal protein L32, chloroplastic
Location	Chr13: 2636436 .. 2639075 (+)
RNA-Seq Expression	Lcy13g003120
Synteny	Lcy13g003120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAGCACTGGCACTTGGTCGCAGCTATGGCGTTGAGGATTATGAGGGCGGTCGAGGGTCAGACGGGTTCAATGCTAGGGCTTAAAGCGATGGCTAATGTTTTACCTCAATCTTCGCCGTTATCTGGGATCATGGACCGTAAGGATTCCACGCCGCCGCTTGTTCTGCCGGAGTTTTACCATGAATCTGACAGGGACAGGATCAACAACTGCAGTATTGTGGGATTTGGTTTCCCTAGTTTATCTTTTTCCGGCTCCATGGAGCTCATGGCTGTTCCTAAGAGGAAGGTATTGAATTTCCTCCTGCTATTTTCATTTAATCAATCGCGGAGAAGATCCTTGTCTTAGAATAGAAACTTAAACTATTTGTTTCTTGGGGAAAAAGTAGAAACTTCAAATTCCACATTGCTTGAATTCGTGGATATGAAAGATGTTATTGGAAGTGTTAGAAATGGACTTATAGACTCCGAATAGTCCGAATAGTTTAGGGAGCATTGGCAGTAGCACTTTTGATGTTGAATTCTTCGGGATATTTTAGATAGGGCTATGAGAGAATTTTTTAGGTCTGTTTTATAACAATTTCGTTTTTAGTTTTCTGTTTGTGAGAATTGTGCTTGTTTCCTCACAATTTCTCCACCATGGTTTTCACATCTCTATGGAATATTTGAATTTTTAACCAAAGTCGAAAAACAAGAACAAGTTTTAAAAAACTAATTTACTTTTAGATTTTGAAACCATTTTTAGAAAGTATATAACAAAAGAAAGAACCTTACCTGGAAGTAGTATCCACAAGCTTAATATTCAAAAATCAAATGGGCCTTAGAACATTTTTGTTATGTTCTTTGGTCAATGCGCTTGATATCATATGGTACTTGGTAGTAGTGACTGTTTCTCTTTCAATGCAATAAGCATTGTGAAGATTGTTTGGTTTTAGAGTTCTTAGACGTTTTTTATTGGACTTGACATTCTTATGACTCGACAATGTTGATATCTGAATGCATGATAGTCTTTATATGTATGTTTGAGACATTCCCTTAGGACTCTGCTAGGTTTCCAAAGTTCCTCTTCTAAAACTTGGTCTTGTTCGGATATATTGGAAATTTTGAGAAAAACAATTCATAGTCTTTGTTTTGCAGGTTTCTCCACATAAAAGGGGCATAAGAAATGGTCCAAAGGCTCTAAAACCTATTCCAGTTATAATTCGATGCAAGTAAGATTCTCCTCACTCTGCCCTAACAAATTAGTCTTCAACGTTGATTTTAGCTTCTAGGAAAATTAATTTGCTTGGATTATTTATTTATTTATTTATTTTTATTTTTAATTGTGATATTGAAACATGATCAATCTAGTAATTGCATACGTTATTGTATCATCGCTTGGGAGTTGTTTTTTCACAACAGCTGAACTTACACCTGATTATGATTTGTGCTTCATCTCGGATGTATTTCAGTATGATCAATCGAGTTCTTGCAAACTTTTGACCTGTAGTTCAGGTCACCGAGACAATTGGTCATTTAGTTAGTGATTGTGGCCAAGTGTTAGAGAAAGCTGATATTTAGGATGTAGTCTTTCAAGAAAGAAAAAAATGGATTCAGCTGGTGTCAAGGGTGATAGTGACAAGACAAGGATGCCAATTGTCTGTATGATAGCTTGCCAGAGTTTCAATTTTTTTCCTTCATTCTACATATTTTGTTTGAAATAAATCCCAGAATAGTATTGTTTAAAAAACATCATGAAATGTTATAATAAGAATATTTCTGATAGCAGAAATTGTTTAGAAACATCTTTAACATGTCTGTCAGCTTCATTGAAGTGGAGCACAGAAAGGGGGATTTTAGTTTTATGCTAACGAATCAAGTTTGAACTGTATTATTTTCTTGCACATGCTGAAACGCTTCAGCATAACTAGTTTAAGCATTGCATTTATTTCTTATGTTCAATTGAATTTCTCTCCTAATTCCATAAGGCCCTATACGTATCTATTAGTTTTTCTTTTGAAATTCATCTAGGAGATGGTTTCCATCAACCTTGCCTTGCAAGTTTGCAACGATACGAAAGATATTTGGTTCATATGGAAAGAATAAAAGATTCAAAACACATCTGGTTTGACTCATACAATTATGCAGTATTTTGATAAAATCCGCACATAATGTGTGATAATGTAAAATGCTTATAGTCTTTAAGAATTTTCTTGGCTGAGTTTGTTGTTATTGCAGGAGTTGTGGTAAAGTCAAGCTGCCTCACTTCTATTGTTGCAGTGGAAGGACAGGGGAGCAGGATAACTCAGCCAGATGAGCCAATGCAGGGTAAAAAGGACAGACTGAAAAGGGCTTAAATCCCATAGAATTTTTCCTCATACCTGGGAGCTACAGTTTCCTTTTGAGTATTCTTCTTTATTAGGTTCTTTAAATTTGGCCTCTTTTCCCCTTTCAGAAAGGACGCTCATTGTATGGCAGATTGTAAGATTTCAATATGTGATAACCATTAATTAGCTTTTGAGCTACATCCTTGTTTTGTCTATAATGGGACTCTTTTAGCATGTCTTTTGCTTTCTCAAATCACTTCTTCCATAGAAGGTTTTACTTTCTTCAATTCAAGAATTTCTACTAAGCAGATGGAAGTGAAGATAAATGGTTTGAAC

mRNA sequence

ATCAGCACTGGCACTTGGTCGCAGCTATGGCGTTGAGGATTATGAGGGCGGTCGAGGGTCAGACGGGTTCAATGCTAGGGCTTAAAGCGATGGCTAATGTTTTACCTCAATCTTCGCCGTTATCTGGGATCATGGACCGTAAGGATTCCACGCCGCCGCTTGTTCTGCCGGAGTTTTACCATGAATCTGACAGGGACAGGATCAACAACTGCAGTATTGTGGGATTTGGTTTCCCTAGTTTATCTTTTTCCGGCTCCATGGAGCTCATGGCTGTTCCTAAGAGGAAGGTTTCTCCACATAAAAGGGGCATAAGAAATGGTCCAAAGGCTCTAAAACCTATTCCAGTTATAATTCGATGCAAGAGTTGTGGTAAAGTCAAGCTGCCTCACTTCTATTGTTGCAGTGGAAGGACAGGGGAGCAGGATAACTCAGCCAGATGAGCCAATGCAGGGTAAAAAGGACAGACTGAAAAGGGCTTAAATCCCATAGAATTTTTCCTCATACCTGGGAGCTACAGTTTCCTTTTGAGTATTCTTCTTTATTAGGTTCTTTAAATTTGGCCTCTTTTCCCCTTTCAGAAAGGACGCTCATTGTATGGCAGATTGTAAGATTTCAATATGTGATAACCATTAATTAGCTTTTGAGCTACATCCTTGTTTTGTCTATAATGGGACTCTTTTAGCATGTCTTTTGCTTTCTCAAATCACTTCTTCCATAGAAGGTTTTACTTTCTTCAATTCAAGAATTTCTACTAAGCAGATGGAAGTGAAGATAAATGGTTTGAAC

Coding sequence (CDS)

ATGGCGTTGAGGATTATGAGGGCGGTCGAGGGTCAGACGGGTTCAATGCTAGGGCTTAAAGCGATGGCTAATGTTTTACCTCAATCTTCGCCGTTATCTGGGATCATGGACCGTAAGGATTCCACGCCGCCGCTTGTTCTGCCGGAGTTTTACCATGAATCTGACAGGGACAGGATCAACAACTGCAGTATTGTGGGATTTGGTTTCCCTAGTTTATCTTTTTCCGGCTCCATGGAGCTCATGGCTGTTCCTAAGAGGAAGGTTTCTCCACATAAAAGGGGCATAAGAAATGGTCCAAAGGCTCTAAAACCTATTCCAGTTATAATTCGATGCAAGAGTTGTGGTAAAGTCAAGCTGCCTCACTTCTATTGTTGCAGTGGAAGGACAGGGGAGCAGGATAACTCAGCCAGATGA

Protein sequence

MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRINNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQDNSAR

Homology

[Close]

BLAST of Lcy13g003120 vs. ExPASy Swiss-Prot
Match: Q2N923 (50S ribosomal protein L32 OS=Erythrobacter litoralis (strain HTCC2594) OX=314225 GN=rpmF PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.1e-05
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 81  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC 125
           MAVPKRKVSPH+RG R    +LK +     C +CG++K PH  C
Sbjct: 1   MAVPKRKVSPHRRGNRRAHDSLK-VEAFHECNNCGELKRPHNMC 43

[Close]

BLAST of Lcy13g003120 vs. ExPASy Swiss-Prot
Match: Q1GT88 (50S ribosomal protein L32 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) OX=317655 GN=rpmF PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-04
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 81  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC 125
           MAVPKRK SP KRG+R    +LK +     C +CG++K PH  C
Sbjct: 1   MAVPKRKTSPSKRGMRRSHDSLK-VEAFQECPNCGELKRPHNLC 43

[Close]

BLAST of Lcy13g003120 vs. ExPASy Swiss-Prot
Match: Q0BTE2 (50S ribosomal protein L32 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) OX=391165 GN=rpmF PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.9e-04
Identity = 23/53 (43.40%), Postives = 30/53 (56.60%), Query Frame = 0


Query: 81  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYCCSGRTGEQD 134
           MAVPK+K SP +RG+R   +AL        C +CG++K PH  C  G  G  D
Sbjct: 1   MAVPKKKTSPSRRGMRRSHQALTG-EAYTECSNCGELKRPHHVC--GHCGHYD 50

[Close]

BLAST of Lcy13g003120 vs. ExPASy Swiss-Prot
Match: Q2G5R9 (50S ribosomal protein L32 OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=rpmF PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.6e-04
Identity = 21/44 (47.73%), Postives = 26/44 (59.09%), Query Frame = 0


Query: 81  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC 125
           MAVPKRK SP +RG+R    AL        C +CG++K PH  C
Sbjct: 1   MAVPKRKTSPSRRGMRRSHDALS-AEAFHECSNCGELKRPHMLC 43

[Close]

BLAST of Lcy13g003120 vs. ExPASy Swiss-Prot
Match: Q5FUN5 (50S ribosomal protein L32 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rpmF PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 1.0e-03
Identity = 20/44 (45.45%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 81  MAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYC 125
           MAVPKRK +P +RG+R   +AL  +     C +CG++K PH  C
Sbjct: 1   MAVPKRKTTPSRRGMRRSHQAL-GVEAHAECSNCGEMKRPHHVC 43

[Close]

BLAST of Lcy13g003120 vs. ExPASy TrEMBL
Match: A0A6J1HYN6 (50S ribosomal protein L32, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467436 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 128/137 (93.43%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRIN 60
           MALRI+RAVEGQTGSM GLKAMA VLP SSP+SGIMD KDS PPLVLPEF HESDRD IN
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMAKVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDGIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120
           NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 121 HFYCCSGRTGEQDNSAR 138
           HFYCCSGRTGEQDNSAR
Sbjct: 121 HFYCCSGRTGEQDNSAR 137

[Close]

BLAST of Lcy13g003120 vs. ExPASy TrEMBL
Match: A0A6J1G1I2 (50S ribosomal protein L32, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449817 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.3e-66
Identity = 126/137 (91.97%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRIN 60
           MALRI+RAVEGQTGSM GLKAMANVLP SSP++GI+ RKDS PPLVLPEF HESDRD IN
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMANVLPHSSPITGIIYRKDSAPPLVLPEFNHESDRDGIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120
           NCSIVGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 121 HFYCCSGRTGEQDNSAR 138
           HFYCCSGRTGEQDNSAR
Sbjct: 121 HFYCCSGRTGEQDNSAR 137

[Close]

BLAST of Lcy13g003120 vs. ExPASy TrEMBL
Match: A0A6J1DBR3 (50S ribosomal protein L32, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019232 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.7e-65
Identity = 129/140 (92.14%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 1   MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRIN 60
           MALRIMRAVEGQT SMLGLKAMANVLP  SPLSGIMDRKDSTPPLVLPEF HESD DRI 
Sbjct: 1   MALRIMRAVEGQTCSMLGLKAMANVLPHFSPLSGIMDRKDSTPPLVLPEFNHESDSDRIG 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120
           NCS VGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP
Sbjct: 61  NCSSVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 121 HFYCCS---GRTGEQDNSAR 138
           HFYCCS   GRTGEQDNS R
Sbjct: 121 HFYCCSGDRGRTGEQDNSTR 140

[Close]

BLAST of Lcy13g003120 vs. ExPASy TrEMBL
Match: A0A0A0KQP7 (50S ribosomal protein L32, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G606360 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 9.5e-58
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRIN 60
           MALRIMRA+EGQ GSMLGLKAMA  LP SSP+SG+M  KDS PPLVLPEF  E D D+ N
Sbjct: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120
           NCSIVGFGFPSLSFSGSMELMAVPK+KVSPHKR IRN PKALKPIPVI+RCK+CGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120

Query: 121 HFYCCSGRTGEQDNSA 137
           H+YCCSGR G+QDNSA
Sbjct: 121 HYYCCSGRPGDQDNSA 136

[Close]

BLAST of Lcy13g003120 vs. ExPASy TrEMBL
Match: A0A5A7SYB6 (50S ribosomal protein L32, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00190 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.1e-57
Identity = 115/136 (84.56%), Postives = 119/136 (87.50%), Query Frame = 0


Query: 1   MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRIN 60
           MALRIMRA+EGQTGSMLGLKAMA  LP SS   G+M  KDS PPLVLPEF  ESD DRIN
Sbjct: 1   MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120
           NCSIVGFGFPSL FSGSMELMAVPK+KVSPHKR IRN PKALKPIPVIIRCK CGKVKLP
Sbjct: 61  NCSIVGFGFPSLYFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIIRCKGCGKVKLP 120

Query: 121 HFYCCSGRTGEQDNSA 137
           H+YCCSGR GEQDNSA
Sbjct: 121 HYYCCSGRPGEQDNSA 134

[Close]

BLAST of Lcy13g003120 vs. NCBI nr
Match: XP_023541204.1 (uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-67
Identity = 128/137 (93.43%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRIN 60
           MALRI+RAVEGQTGSM GLKAM  VLP SSP+SGIMDRKDS PPLVLPEF HESDRDRIN
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMTKVLPHSSPISGIMDRKDSAPPLVLPEFNHESDRDRIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120
           NCSIVGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 121 HFYCCSGRTGEQDNSAR 138
           HFYCCSGRTGEQDNSAR
Sbjct: 121 HFYCCSGRTGEQDNSAR 137

[Close]

BLAST of Lcy13g003120 vs. NCBI nr
Match: XP_022968104.1 (uncharacterized protein LOC111467436 [Cucurbita maxima])

HSP 1 Score: 264.2 bits (674), Expect = 6.1e-67
Identity = 128/137 (93.43%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRIN 60
           MALRI+RAVEGQTGSM GLKAMA VLP SSP+SGIMD KDS PPLVLPEF HESDRD IN
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMAKVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDGIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120
           NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 121 HFYCCSGRTGEQDNSAR 138
           HFYCCSGRTGEQDNSAR
Sbjct: 121 HFYCCSGRTGEQDNSAR 137

[Close]

BLAST of Lcy13g003120 vs. NCBI nr
Match: KAG6574067.1 (hypothetical protein SDJN03_27954, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263.1 bits (671), Expect = 1.4e-66
Identity = 127/137 (92.70%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRIN 60
           MALRI+RAVEGQTGSM GLKAM  VLP SSP+SGIMDRKDS PPLVLPEF HESDRD IN
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMTKVLPHSSPISGIMDRKDSAPPLVLPEFNHESDRDGIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120
           NCSIVGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 121 HFYCCSGRTGEQDNSAR 138
           HFYCCSGRTGEQDNSAR
Sbjct: 121 HFYCCSGRTGEQDNSAR 137

[Close]

BLAST of Lcy13g003120 vs. NCBI nr
Match: XP_022945635.1 (uncharacterized protein LOC111449817 [Cucurbita moschata])

HSP 1 Score: 260.8 bits (665), Expect = 6.8e-66
Identity = 126/137 (91.97%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 1   MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRIN 60
           MALRI+RAVEGQTGSM GLKAMANVLP SSP++GI+ RKDS PPLVLPEF HESDRD IN
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMANVLPHSSPITGIIYRKDSAPPLVLPEFNHESDRDGIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120
           NCSIVGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 121 HFYCCSGRTGEQDNSAR 138
           HFYCCSGRTGEQDNSAR
Sbjct: 121 HFYCCSGRTGEQDNSAR 137

[Close]

BLAST of Lcy13g003120 vs. NCBI nr
Match: KAG7013127.1 (hypothetical protein SDJN02_25883 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.8 bits (660), Expect = 2.6e-65
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MALRIMRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDRIN 60
           MALRI+RAVEGQTGSM GLKAM  VLP SSP++GI+DRKDS PPLVLPEF HESDR+ IN
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMTKVLPHSSPITGIIDRKDSAPPLVLPEFNHESDREGIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120
           NCSIVGFGFPSLSFSGSMELMAVPKRK SPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 121 HFYCCSGRTGEQDNSAR 138
           HFYCCSGRTGEQDNSAR
Sbjct: 121 HFYCCSGRTGEQDNSAR 137

[Close]

BLAST of Lcy13g003120 vs. TAIR 10
Match: AT1G26740.1 (Ribosomal L32p protein family )

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-35
Identity = 72/129 (55.81%), Postives = 96/129 (74.42%), Query Frame = 0


Query: 1   MALRI--MRAVEGQTGSMLGLKAMANVLPQSSPLSGIMDRKDSTPPLVLPEFYHESDRDR 60
           MALR+  ++    ++  +L  +++++V    SPL+G  DR  S PPLVLPEF  + ++  
Sbjct: 1   MALRLTSLKRAAVESCRILETRSLSHVAAMPSPLNGAFDRPISMPPLVLPEF--DQNQPG 60

Query: 61  INNCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVK 120
           +      GFG PS +F+GSMELMAVPK+K+S HKRGIRNGPKALKP+PVIIRC+SCG+VK
Sbjct: 61  LIEEKSFGFGLPSFAFNGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCRSCGRVK 120

Query: 121 LPHFYCCSG 128
           LPHF+CCSG
Sbjct: 121 LPHFFCCSG 127

[Close]

BLAST of Lcy13g003120 vs. TAIR 10
Match: AT1G69485.1 (Ribosomal L32p protein family )

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-22
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 78  MELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLPHFYCCSGRTG---EQDN 136
           MELMAVPK+K+S HKRGIRNGPKA KP PVIIRC+SCG+VKLPHFYCCSG      EQ N
Sbjct: 1   MELMAVPKKKISKHKRGIRNGPKAFKPTPVIIRCRSCGRVKLPHFYCCSGERAIPDEQSN 60

The following BLAST results are available for this feature:

BLAST of Lcy13g003120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2N923	3.1e-05	52.27	50S ribosomal protein L32 OS=Erythrobacter litoralis (strain HTCC2594) OX=314225...	[more]
Q1GT88	2.0e-04	50.00	50S ribosomal protein L32 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 188...	[more]
Q0BTE2	5.9e-04	43.40	50S ribosomal protein L32 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / ...	[more]
Q2G5R9	7.6e-04	47.73	50S ribosomal protein L32 OS=Novosphingobium aromaticivorans (strain ATCC 700278...	[more]
Q5FUN5	1.0e-03	45.45	50S ribosomal protein L32 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rp...	[more]

BLAST of Lcy13g003120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HYN6	3.0e-67	93.43	50S ribosomal protein L32, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1G1I2	3.3e-66	91.97	50S ribosomal protein L32, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1DBR3	4.7e-65	92.14	50S ribosomal protein L32, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A0A0KQP7	9.5e-58	82.35	50S ribosomal protein L32, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G606...	[more]
A0A5A7SYB6	8.1e-57	84.56	50S ribosomal protein L32, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Lcy13g003120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541204.1	2.1e-67	93.43	uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo]	[more]
XP_022968104.1	6.1e-67	93.43	uncharacterized protein LOC111467436 [Cucurbita maxima]	[more]
KAG6574067.1	1.4e-66	92.70	hypothetical protein SDJN03_27954, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022945635.1	6.8e-66	91.97	uncharacterized protein LOC111449817 [Cucurbita moschata]	[more]
KAG7013127.1	2.6e-65	90.51	hypothetical protein SDJN02_25883 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lcy13g003120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26740.1	1.7e-35	55.81	Ribosomal L32p protein family	[more]
AT1G69485.1	1.7e-22	77.05	Ribosomal L32p protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002677	Ribosomal protein L32p	PFAM	PF01783	Ribosomal_L32p	coord: 82..127 e-value: 6.1E-11 score: 42.4
IPR002677	Ribosomal protein L32p	TIGRFAM	TIGR01031	TIGR01031	coord: 82..124 e-value: 7.6E-9 score: 33.7
IPR002677	Ribosomal protein L32p	HAMAP	MF_00340	Ribosomal_L32	coord: 81..131 score: 11.325276
None	No IPR available	PANTHER	PTHR21026	39S RIBOSOMAL PROTEIN L32, MITOCHONDRIAL	coord: 14..128
None	No IPR available	PANTHER	PTHR21026:SF5	BNACNNG33200D PROTEIN	coord: 14..128
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 80..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g003120.1	Lcy13g003120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome