Lcy13g002640 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g002640
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Quinonprotein alcohol dehydrogenase
Location	Chr13: 2310834 .. 2311847 (-)
RNA-Seq Expression	Lcy13g002640
Synteny	Lcy13g002640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGAGTTATTTTGTATTGCGACTTGTGAGTTAGAATAGGAGTTAATAAGTTTGTGCAACCCATAACGTTGGAATATGAGTTAATAAGTTTATAGGCTTCACAATTGTGTTATATGTCATTGGATCAAACAAAAATTTGAGTAGAGTTATTAACTCATTTAGCTTCACTCCATTGAACCCTTCAATCCAAACACGCTCTTAAAAGGTATTTAATTAATATCTTTTTTAAGAGTATGTCCACATTAAAAGAGGCTTAATTTTGAAAGGTTCCTCTTCTAAATTATACCAGATAAATTTAGAAAAGAAAATCCCACACCTGTGGACAAGAGCTCTAACTCCTTATTTTGAGTTTAATTATTATTATTATTATAAGGACTTTCTTAACTACTAAACTACTCCATGATCGTTAGGAGAATTGAGTCTAATGATTCGATGAAGGATATATGTCTTAACCAATTGAACAGACTTACATCAATGCTAAGGTCACTTCTAAAATTAAGGAAAAATAGGACAGATTAGATCAACTTTTATCATAAACTTTTAATTTTATTCCTTACATATGAATACAATATATATATATATATAGTAAGAATTTGAACCTCTCATTTCTAGAAAAAAAAAGTAGATGTACATGTAATGACCATGAGTTATTTGTTGATATTCCGGCAGTTGGCCGGACCTGTAGGCAAAGGAGGCCGCACATGGGGCGGAACGACCGGAGGAAGAAGAATGTACATGTACGTCGTCAACAGCGAACGAGCCCTTCACCCTCGCACCTTCTAACCACCCAACAACGACGGGCGGCTGGGCGGCGCTGGACGCCAATACCGGTCGAATCCTCTGGTCCACGGCGAACCCCAGCAACGAAACAGCTTACGTGCCTCTGTCGGTGCCCAGCGGCATCCTTTTCGCCGGCCAAATGGTCGGATTTACGCCATGGACATCGAAAATGGAGAAATTATCTGGTCCTACAACACCGGAGCTACTGTTTATGGAGGAATTTATGTGA

mRNA sequence

ATGAAATTGAGTTATTTTGTATTGCGACTTGCAAAGGAGGCCGCACATGGGGCGGAACGACCGGAGGAAGAAGAATGTACATGTACGTCGTCAACAGCGAACGAGCCCTTCACCCTCGCACCTTCTAACCACCCAACAACGACGGGCGGCTGGGCGGCGCTGGACGCCAATACCGGTCGAATCCTCTGGTCCACGGCGAACCCCAGCAACGAAACAGCTTACGTGCCTCTGTCGGTGCCCAGCGGCATCCTTTTCGCCGGCCAAATGGTCGGATTTACGCCATGGACATCGAAAATGGAGAAATTATCTGGTCCTACAACACCGGAGCTACTGTTTATGGAGGAATTTATGTGA

Coding sequence (CDS)

ATGAAATTGAGTTATTTTGTATTGCGACTTGCAAAGGAGGCCGCACATGGGGCGGAACGACCGGAGGAAGAAGAATGTACATGTACGTCGTCAACAGCGAACGAGCCCTTCACCCTCGCACCTTCTAACCACCCAACAACGACGGGCGGCTGGGCGGCGCTGGACGCCAATACCGGTCGAATCCTCTGGTCCACGGCGAACCCCAGCAACGAAACAGCTTACGTGCCTCTGTCGGTGCCCAGCGGCATCCTTTTCGCCGGCCAAATGGTCGGATTTACGCCATGGACATCGAAAATGGAGAAATTATCTGGTCCTACAACACCGGAGCTACTGTTTATGGAGGAATTTATGTGA

Protein sequence

MKLSYFVLRLAKEAAHGAERPEEEECTCTSSTANEPFTLAPSNHPTTTGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQMVGFTPWTSKMEKLSGPTTPELLFMEEFM

Homology

[Close]

BLAST of Lcy13g002640 vs. ExPASy TrEMBL
Match: A0A4D9BPE5 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_011010 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.2e-14
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 34  NEPFTLAPSNHPTTTGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQMVGFT 93
           NEPFTL PS   TT GGW A+DANTG+ILW+TANPSNETA+ P+++ +G+LFAG +    
Sbjct: 407 NEPFTLKPSTRNTTAGGWVAMDANTGKILWTTANPSNETAHGPVTIVNGVLFAGSVAPTG 466

Query: 94  P 95
           P
Sbjct: 467 P 467

[Close]

BLAST of Lcy13g002640 vs. ExPASy TrEMBL
Match: A0A314L1S1 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_02656 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-13
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 36  PFTLAPSNHPTTTGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQM 90
           PFTLAPSN  TT GGW ALDANTG+ILW+TA+PSNETA+ P+++ +G+LFAG +
Sbjct: 431 PFTLAPSNQTTTAGGWVALDANTGQILWTTADPSNETAHGPVTIVNGLLFAGSV 484

[Close]

BLAST of Lcy13g002640 vs. ExPASy TrEMBL
Match: A0A6I9TN83 (uncharacterized protein LOC105168623 OS=Sesamum indicum OX=4182 GN=LOC105168623 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-13
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 36  PFTLAPSNHPTTTGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQMVGFTP 95
           PFTL PSN  T  GGW A+DANTGRILW+TANPSNETA+ P++V +G+LFAG +    P
Sbjct: 415 PFTLKPSNQTTVAGGWVAMDANTGRILWTTANPSNETAHGPVTVVNGVLFAGSVAPSGP 473

[Close]

BLAST of Lcy13g002640 vs. ExPASy TrEMBL
Match: A0A314YLP3 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_37085 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.7e-13
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 11  AKEAAHGAERPEEEECTCTSSTA-NEPFTLAPSNHPTTTGGWAALDANTGRILWSTANPS 70
           AKE A+G +    EEC  T   A  + FTLAPS+  TT G W ALDA++G ILW+TANPS
Sbjct: 343 AKEEAYGVQPQMGEECIQTLPMATRQNFTLAPSSQTTTAGAWVALDADSGEILWTTANPS 402

Query: 71  NETAYVPLSVPSGILFAGQMVGFTP 95
           N+TA  P++V +G++FAG +    P
Sbjct: 403 NDTAQAPVTVANGVVFAGSVASNGP 427

[Close]

BLAST of Lcy13g002640 vs. ExPASy TrEMBL
Match: A0A1U7VTF1 (uncharacterized protein LOC104217192 OS=Nicotiana sylvestris OX=4096 GN=LOC104217192 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.7e-13
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 36  PFTLAPSNHPTTTGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQM 90
           PFTLAPSN  TT GGW ALDANTG+ILW+TA+PSN+TA+ P+++ +G+LFAG +
Sbjct: 412 PFTLAPSNQTTTAGGWVALDANTGQILWTTADPSNDTAHGPVTIVNGLLFAGSV 465

[Close]

BLAST of Lcy13g002640 vs. NCBI nr
Match: XP_042049086.1 (polyvinylalcohol dehydrogenase-like [Salvia splendens])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 34  NEPFTLAPSNHPTTTGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQMVGFT 93
           NEPFTL PS   TT GGW A+DANTG+ILW+TANPSNETA+ P+++ +G+LFAG +    
Sbjct: 407 NEPFTLKPSTRNTTAGGWVAMDANTGKILWTTANPSNETAHGPVTIVNGVLFAGSVAPTG 466

Query: 94  P 95
           P
Sbjct: 467 P 467

[Close]

BLAST of Lcy13g002640 vs. NCBI nr
Match: KAG6429682.1 (hypothetical protein SASPL_107734 [Salvia splendens])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 34  NEPFTLAPSNHPTTTGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQMVGFT 93
           NEPFTL PS   TT GGW A+DANTG+ILW+TANPSNETA+ P+++ +G+LFAG +    
Sbjct: 407 NEPFTLKPSTRNTTAGGWVAMDANTGKILWTTANPSNETAHGPVTIVNGVLFAGSVAPTG 466

Query: 94  P 95
           P
Sbjct: 467 P 467

[Close]

BLAST of Lcy13g002640 vs. NCBI nr
Match: KAG8366311.1 (hypothetical protein BUALT_Bualt17G0066200 [Buddleja alternifolia])

HSP 1 Score: 85.1 bits (209), Expect = 4.3e-13
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 34  NEPFTLAPSNHPTTTGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQMVGFT 93
           N PFTL PSN  TT GGW A+DANTGRI+W+TANPSNETA+ P+++ +G+LF G +    
Sbjct: 408 NLPFTLKPSNRTTTAGGWVAMDANTGRIIWTTANPSNETAHGPVTIVNGVLFVGSVAPSG 467

Query: 94  P 95
           P
Sbjct: 468 P 468

[Close]

BLAST of Lcy13g002640 vs. NCBI nr
Match: XP_019265633.1 (PREDICTED: uncharacterized protein LOC109243175 [Nicotiana attenuata])

HSP 1 Score: 85.1 bits (209), Expect = 4.3e-13
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 36  PFTLAPSNHPTTTGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQM 90
           PFTLAPSN  TT GGW ALDANTG+ILW+TA+PSNETA+ P+++ +G+LFAG +
Sbjct: 397 PFTLAPSNQTTTAGGWVALDANTGQILWTTADPSNETAHGPVTIVNGLLFAGSV 450

[Close]

BLAST of Lcy13g002640 vs. NCBI nr
Match: OIT35578.1 (hypothetical protein A4A49_02656 [Nicotiana attenuata])

HSP 1 Score: 85.1 bits (209), Expect = 4.3e-13
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 36  PFTLAPSNHPTTTGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQM 90
           PFTLAPSN  TT GGW ALDANTG+ILW+TA+PSNETA+ P+++ +G+LFAG +
Sbjct: 431 PFTLAPSNQTTTAGGWVALDANTGQILWTTADPSNETAHGPVTIVNGLLFAGSV 484

The following BLAST results are available for this feature:

BLAST of Lcy13g002640 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g002640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D9BPE5	7.2e-14	62.30	Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_011010 PE=4 SV=1	[more]
A0A314L1S1	2.1e-13	68.52	Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_02656 PE=4 SV=1	[more]
A0A6I9TN83	2.1e-13	64.41	uncharacterized protein LOC105168623 OS=Sesamum indicum OX=4182 GN=LOC105168623 ...	[more]
A0A314YLP3	4.7e-13	50.59	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_370...	[more]
A0A1U7VTF1	4.7e-13	66.67	uncharacterized protein LOC104217192 OS=Nicotiana sylvestris OX=4096 GN=LOC10421...	[more]

BLAST of Lcy13g002640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042049086.1	1.5e-13	62.30	polyvinylalcohol dehydrogenase-like [Salvia splendens]	[more]
KAG6429682.1	1.5e-13	62.30	hypothetical protein SASPL_107734 [Salvia splendens]	[more]
KAG8366311.1	4.3e-13	60.66	hypothetical protein BUALT_Bualt17G0066200 [Buddleja alternifolia]	[more]
XP_019265633.1	4.3e-13	68.52	PREDICTED: uncharacterized protein LOC109243175 [Nicotiana attenuata]	[more]
OIT35578.1	4.3e-13	68.52	hypothetical protein A4A49_02656 [Nicotiana attenuata]	[more]

BLAST of Lcy13g002640 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32303	QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C)	coord: 25..90
None	No IPR available	PANTHER	PTHR32303:SF18	POLYVINYLALCOHOL DEHYDROGENASE-LIKE	coord: 25..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g002640.1	Lcy13g002640.1	mRNA