Lcy13g002480 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g002480
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RRM domain-containing protein
Location	Chr13: 2192310 .. 2193707 (-)
RNA-Seq Expression	Lcy13g002480
Synteny	Lcy13g002480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCATGTAGTATGTGAAAGTTTCCCAAACAAAAGACAAATAAAGTGCAAAATGTTTGATTGGAACGTGTTGGGGCTAAATTAAATCTGCAGAGGGCGGAGGTAATTCGGGCATAACCATAATCTTTTTGGCGCCACCGATTTTCCCTCGCCGCTCCTCCGAGAAGCGATGAGTCGCAAGAGAGACAAACCCTACCCTTCCCTCCACGTTCACACCTCCGTCGCTAAGAGGCGGCGCCCTCTGCCGCCGGTACAGTCATCGGCGGAAGACGATGATATGGACAAGCCCTTGCCGAAGCCTGCGCCACCACCTGCCCTAGTCGTCGTTGACCTACCGTCACACTGTTCAGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGGATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACCAAAGACTCTGCTGATGCTGCCATGGCCGCCGCCCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTACCTTTTTTGATATTTATGTACCAAATTGTAGCTCATTCTCTGAACATTCTTGTTGAGTGGAGATTTTTGTGCAAATTTTGGCTTTTTTTTTTACTGTTTGCTACACTTCTCTCATTCCTAAATTAGCAAATTGGAAGTAGTTTTTCTTCTGTTTTTGCTTCCGAACAAAGGATCTCAACAACCATCTGAATTTGGGTCTTGATTTTGTGTGCAAATCTCTGTAATTGTCTAGGACTTGAGACTGAATTGGATTTGTTGCTCTGCTCTTTGTAATTCTGAATGATGAAATTGAGGACATTTCCACAGGTTCAGGTATTATGGGCTAATGATCCTCAAGTGCAATGGAGACAAGGGATTAACGTTGGTGTCAACAAGAATAAGGAATTGTCATCGAAGCTCTTGCGGGCAGAAGTGCCTCTGAGCAGACATGGGAGAGGCAATAAGCTTGCTTCAACCATTGTTAACCCCAGAAGAAGTGACAGTTCTTCAAGGTCGGATGTGCCTTTCAGGGGCCGGGAAGTTATTGCTTATGATGATATTCTCTAAGTTTATAGTTTGCTTCACTGATTGTTTACCTGCTTTTGTTGATTTTGGTTAAGTATAGTGTAGTATAGATTGAGTTTTCAAGTGTATAACTGTTTTCTGCTAATTTCCTCCAATTCCCCTTGAATTCTTATTGATTGAAGCTTCTTCATGGTCCTAAATCCATGGTTGTGTTAATGTATATGTACCATTAATGAAAAGAAACTTAAGCCTCTCACAAGCTGCTTACTTAATTACTGTGTTCTTTTGGTTGAACTGAACTGAGTTCAATGTAATGCTGGCTGCTTACTTCTAGTTATGCTTTGGCTTTCCCTTACTATATGAGCTTCTTCCAGAGC

mRNA sequence

TCTTCATGTAGTATGTGAAAGTTTCCCAAACAAAAGACAAATAAAGTGCAAAATGTTTGATTGGAACGTGTTGGGGCTAAATTAAATCTGCAGAGGGCGGAGGTAATTCGGGCATAACCATAATCTTTTTGGCGCCACCGATTTTCCCTCGCCGCTCCTCCGAGAAGCGATGAGTCGCAAGAGAGACAAACCCTACCCTTCCCTCCACGTTCACACCTCCGTCGCTAAGAGGCGGCGCCCTCTGCCGCCGGTACAGTCATCGGCGGAAGACGATGATATGGACAAGCCCTTGCCGAAGCCTGCGCCACCACCTGCCCTAGTCGTCGTTGACCTACCGTCACACTGTTCAGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGGATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACCAAAGACTCTGCTGATGCTGCCATGGCCGCCGCCCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTCAGGTATTATGGGCTAATGATCCTCAAGTGCAATGGAGACAAGGGATTAACGTTGGTGTCAACAAGAATAAGGAATTGTCATCGAAGCTCTTGCGGGCAGAAGTGCCTCTGAGCAGACATGGGAGAGGCAATAAGCTTGCTTCAACCATTGTTAACCCCAGAAGAAGTGACAGTTCTTCAAGGTCGGATGTGCCTTTCAGGGGCCGGGAAGTTATTGCTTATGATGATATTCTCTAAGTTTATAGTTTGCTTCACTGATTGTTTACCTGCTTTTGTTGATTTTGGTTAAGTATAGTGTAGTATAGATTGAGTTTTCAAGTGTATAACTGTTTTCTGCTAATTTCCTCCAATTCCCCTTGAATTCTTATTGATTGAAGCTTCTTCATGGTCCTAAATCCATGGTTGTGTTAATGTATATGTACCATTAATGAAAAGAAACTTAAGCCTCTCACAAGCTGCTTACTTAATTACTGTGTTCTTTTGGTTGAACTGAACTGAGTTCAATGTAATGCTGGCTGCTTACTTCTAGTTATGCTTTGGCTTTCCCTTACTATATGAGCTTCTTCCAGAGC

Coding sequence (CDS)

ATGAGTCGCAAGAGAGACAAACCCTACCCTTCCCTCCACGTTCACACCTCCGTCGCTAAGAGGCGGCGCCCTCTGCCGCCGGTACAGTCATCGGCGGAAGACGATGATATGGACAAGCCCTTGCCGAAGCCTGCGCCACCACCTGCCCTAGTCGTCGTTGACCTACCGTCACACTGTTCAGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGGATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACCAAAGACTCTGCTGATGCTGCCATGGCCGCCGCCCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTCAGGTATTATGGGCTAATGATCCTCAAGTGCAATGGAGACAAGGGATTAACGTTGGTGTCAACAAGAATAAGGAATTGTCATCGAAGCTCTTGCGGGCAGAAGTGCCTCTGAGCAGACATGGGAGAGGCAATAAGCTTGCTTCAACCATTGTTAACCCCAGAAGAAGTGACAGTTCTTCAAGGTCGGATGTGCCTTTCAGGGGCCGGGAAGTTATTGCTTATGATGATATTCTCTAA

Protein sequence

MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDVPFRGREVIAYDDIL

Homology

[Close]

BLAST of Lcy13g002480 vs. ExPASy Swiss-Prot
Match: P0CJ66 (Uncharacterized protein At1g27050 OS=Arabidopsis thaliana OX=3702 GN=At1g27050 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.7e-53
Identity = 108/206 (52.43%), Postives = 146/206 (70.87%), Query Frame = 0


Query: 1   MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCS 60
           MSRKRDKPY + H    ++KRRRP  P  SS  D+ +DKP+ KP PPPALVV+ LP++CS
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAP-SSSEHDEIIDKPITKPPPPPALVVMGLPANCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A + +PSFG +IDSKK++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSD----- 180
           A DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  +     
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVNPRSDNTKGIS 180

Query: 181 -----SSSRSDVPFRGREVIAYDDIL 195
                SS  +    + R ++ YDDI+
Sbjct: 181 GDGGISSPATTSEVKQRNIVTYDDIV 205

[Close]

BLAST of Lcy13g002480 vs. ExPASy TrEMBL
Match: A0A6J1DBZ8 (uncharacterized protein At1g27050 OS=Momordica charantia OX=3673 GN=LOC111019113 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.4e-93
Identity = 174/194 (89.69%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCS 60
           MSRKRDKPYPS HV TSV+KRRRPLPPV S  EDDD+DKP+PKPAPPPALV+VDLPS+CS
Sbjct: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDV 180
           ANDPQVQWRQGINVGVNK  ELSSKLLRAEVPLSRHGRGN+LASTIVNPR+SD SSR DV
Sbjct: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180

Query: 181 PFRGREVIAYDDIL 195
           PFR REV+AYDDIL
Sbjct: 181 PFRAREVVAYDDIL 194

[Close]

BLAST of Lcy13g002480 vs. ExPASy TrEMBL
Match: A0A6J1KFA1 (uncharacterized protein At1g27050 OS=Cucurbita maxima OX=3661 GN=LOC111494480 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.9e-92
Identity = 175/194 (90.21%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCS 60
           M RKRDKPYPS H  TS AKRRR  PP    AEDDD+DKPLPKPAPP ALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDV 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+S+SSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVIAYDDIL 195
           PFRGREV+AYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Lcy13g002480 vs. ExPASy TrEMBL
Match: A0A6J1GYQ1 (uncharacterized protein At1g27050 OS=Cucurbita moschata OX=3662 GN=LOC111458691 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 2.4e-91
Identity = 174/194 (89.69%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCS 60
           M RKRDKPYPS H  TS AKRRR  PP     EDDD+DKPLPKPAPP ALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDV 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+S+SSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVIAYDDIL 195
           PFRGREV+AYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Lcy13g002480 vs. ExPASy TrEMBL
Match: A0A5A7STE1 (Homeobox-leucine zipper protein ATHB-54 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G003870 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.6e-88
Identity = 171/194 (88.14%), Postives = 177/194 (91.24%), Query Frame = 0


Query: 1   MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCS 60
           M RKRDKPYPS H+ TS AKRRRP P    S  DDD++KP+ KPAPP ALVVVDLPS CS
Sbjct: 1   MGRKRDKPYPSSHLPTSAAKRRRPPP----STVDDDLEKPVSKPAPPLALVVVDLPSQCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDV 180
           ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTIVNPRRS+SSSRSDV
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDV 180

Query: 181 PFRGREVIAYDDIL 195
           PFRGREV+AYDDIL
Sbjct: 181 PFRGREVVAYDDIL 190

[Close]

BLAST of Lcy13g002480 vs. ExPASy TrEMBL
Match: A0A5D3CUC0 (Thaumatin-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00290 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.6e-88
Identity = 171/194 (88.14%), Postives = 177/194 (91.24%), Query Frame = 0


Query: 1   MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCS 60
           M RKRDKPYPS H+ TS AKRRRP P    S  DDD++KP+ KPAPP ALVVVDLPS CS
Sbjct: 265 MGRKRDKPYPSSHLPTSAAKRRRPPP----STVDDDLEKPVSKPAPPLALVVVDLPSQCS 324

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 325 VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 384

Query: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDV 180
           ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGR NKLASTIVNPRRS+SSSRSDV
Sbjct: 385 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDV 444

Query: 181 PFRGREVIAYDDIL 195
           PFRGREV+AYDDIL
Sbjct: 445 PFRGREVVAYDDIL 454

[Close]

BLAST of Lcy13g002480 vs. NCBI nr
Match: XP_038892024.1 (uncharacterized protein At1g27050 [Benincasa hispida])

HSP 1 Score: 354.4 bits (908), Expect = 6.4e-94
Identity = 179/194 (92.27%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCS 60
           M RKRDKPYPS H+ TSVAKRRRP PP  S  ED+DMDKPL KPAPP ALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSSHLPTSVAKRRRPPPPAPSPTEDEDMDKPLSKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDV 180
           ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRS+SSSRSDV
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSNSSSRSDV 180

Query: 181 PFRGREVIAYDDIL 195
           PFRGREV+AYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Lcy13g002480 vs. NCBI nr
Match: XP_022151094.1 (uncharacterized protein At1g27050 [Momordica charantia])

HSP 1 Score: 350.5 bits (898), Expect = 9.2e-93
Identity = 174/194 (89.69%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCS 60
           MSRKRDKPYPS HV TSV+KRRRPLPPV S  EDDD+DKP+PKPAPPPALV+VDLPS+CS
Sbjct: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDV 180
           ANDPQVQWRQGINVGVNK  ELSSKLLRAEVPLSRHGRGN+LASTIVNPR+SD SSR DV
Sbjct: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180

Query: 181 PFRGREVIAYDDIL 195
           PFR REV+AYDDIL
Sbjct: 181 PFRAREVVAYDDIL 194

[Close]

BLAST of Lcy13g002480 vs. NCBI nr
Match: XP_023000221.1 (uncharacterized protein At1g27050 [Cucurbita maxima])

HSP 1 Score: 347.1 bits (889), Expect = 1.0e-91
Identity = 175/194 (90.21%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCS 60
           M RKRDKPYPS H  TS AKRRR  PP    AEDDD+DKPLPKPAPP ALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDV 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+S+SSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVIAYDDIL 195
           PFRGREV+AYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Lcy13g002480 vs. NCBI nr
Match: XP_023537967.1 (uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.9 bits (886), Expect = 2.3e-91
Identity = 174/194 (89.69%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCS 60
           M RKRDKPYPS H  TS AKRRR  PP    AEDDD+DKPLPKPAPP ALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDV 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLAST+VNPR+S+SSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSNSSSRSDE 180

Query: 181 PFRGREVIAYDDIL 195
           PFRGREV+AYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Lcy13g002480 vs. NCBI nr
Match: XP_022957251.1 (uncharacterized protein At1g27050 [Cucurbita moschata])

HSP 1 Score: 344.7 bits (883), Expect = 5.0e-91
Identity = 174/194 (89.69%), Postives = 179/194 (92.27%), Query Frame = 0


Query: 1   MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCS 60
           M RKRDKPYPS H  TS AKRRR  PP     EDDD+DKPLPKPAPP ALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSDSSSRSDV 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+S+SSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVIAYDDIL 195
           PFRGREV+AYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]

BLAST of Lcy13g002480 vs. TAIR 10
Match: AT1G27050.1 (homeobox protein 54 )

HSP 1 Score: 208.8 bits (530), Expect = 4.0e-54
Identity = 108/206 (52.43%), Postives = 146/206 (70.87%), Query Frame = 0


Query: 1   MSRKRDKPYPSLHVHTSVAKRRRPLPPVQSSAEDDDMDKPLPKPAPPPALVVVDLPSHCS 60
           MSRKRDKPY + H    ++KRRRP  P  SS  D+ +DKP+ KP PPPALVV+ LP++CS
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAP-SSSEHDEIIDKPITKPPPPPALVVMGLPANCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VL+LKSRFEIYGSISRIRI +D +G ++YRT +SA+AA+A + +PSFG +IDSKK++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ANDPQVQWRQGINVGVNKNK--ELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSD----- 180
           A DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  +     
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVNPRSDNTKGIS 180

Query: 181 -----SSSRSDVPFRGREVIAYDDIL 195
                SS  +    + R ++ YDDI+
Sbjct: 181 GDGGISSPATTSEVKQRNIVTYDDIV 205

The following BLAST results are available for this feature:

BLAST of Lcy13g002480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CJ66	5.7e-53	52.43	Uncharacterized protein At1g27050 OS=Arabidopsis thaliana OX=3702 GN=At1g27050 P...	[more]

BLAST of Lcy13g002480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBZ8	4.4e-93	89.69	uncharacterized protein At1g27050 OS=Momordica charantia OX=3673 GN=LOC111019113...	[more]
A0A6J1KFA1	4.9e-92	90.21	uncharacterized protein At1g27050 OS=Cucurbita maxima OX=3661 GN=LOC111494480 PE...	[more]
A0A6J1GYQ1	2.4e-91	89.69	uncharacterized protein At1g27050 OS=Cucurbita moschata OX=3662 GN=LOC111458691 ...	[more]
A0A5A7STE1	5.6e-88	88.14	Homeobox-leucine zipper protein ATHB-54 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CUC0	5.6e-88	88.14	Thaumatin-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Lcy13g002480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892024.1	6.4e-94	92.27	uncharacterized protein At1g27050 [Benincasa hispida]	[more]
XP_022151094.1	9.2e-93	89.69	uncharacterized protein At1g27050 [Momordica charantia]	[more]
XP_023000221.1	1.0e-91	90.21	uncharacterized protein At1g27050 [Cucurbita maxima]	[more]
XP_023537967.1	2.3e-91	89.69	uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo]	[more]
XP_022957251.1	5.0e-91	89.69	uncharacterized protein At1g27050 [Cucurbita moschata]	[more]

BLAST of Lcy13g002480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27050.1	4.0e-54	52.43	homeobox protein 54	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 49..119 e-value: 5.8E-6 score: 35.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 50..101 e-value: 6.0E-7 score: 29.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 48..123 score: 10.735407
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 26..180 e-value: 2.1E-10 score: 42.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..41
None	No IPR available	CDD	cd00590	RRM_SF	coord: 52..94 e-value: 1.93505E-5 score: 39.2105
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 31..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g002480.1	Lcy13g002480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding