Lcy13g002050 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g002050
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	AD domain-containing protein
Location	Chr13: 1852398 .. 1855507 (+)
RNA-Seq Expression	Lcy13g002050
Synteny	Lcy13g002050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAAGCCCTAATTTATATGGGGATTAGAAAATTAGAGTCGTTACCCAACTCCTTCAGGAGGAGGAAGCGAAGGTTCCAACTTTTACAGCGAGGAAGAAGGCGAAAATGGCACTGGACGGTAGCGGCAATGGCGATGACTTCACTGTTGGGTCCTTCTTCTCCATTAAGACGACCTTAGGCGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTGGGTTTCTAACTTCGTTTAATCATTATCACTGTCTCTGCTTCTTGAATTCCTTGACTTCTTTTTCTGTCTTCTCTTTATTTTGCGGTTGCCACAGGAGGGTTCGAAGCCAGGCCCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAGTTTTCGTTCTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAAGTGTTACCTCGATCTCAACACTCTCCGTGCTCGAGAGGAACTGGCCATTAGGTACGTCAACAACCCATTGGAAATTCTTGTGGGTTTTCGTTGCTTAGTTGAGATTTTTCCAGTTTCTGATTCAATTATGTGTTCTCATTCTCTTTTGGTCATCGGGTCGTTCTGAATTTTGCAGGCAGGCAGAGGCGGAGGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAAAGTATTTTTGACGCCTTATCTAAAACGTAAGTTTAGTTTTATTTTGTTCGTAGGAATATTTGGAAAGTCTATTTCGATTGTACTTAAACATTTACGAAGATTTCATTCATACTATTTTTAGTCCATGCCCACGCATTTTTGGTAATATGTGGCAATTTTATCAGTTTTCTTTGCTTATGCAATTGTTCCATTAATCCTGATCATTTCTATATATTGATTTCATATTAAGAGAAGCCATGAATGCTTGTGTCTTTATCATTATATATGCCTTTTTATGCGTGCTGGGTTGGTGAACTTGTTTACGGATCATTACAGTGCATTCTCCCTCTTACTCAAGTTCTTCTCTATAAATTCTTTAGAAGCTTAGCTACATTGGAAGATAGTTTAGTTTACCGGGATGAGGAAATTGGACCATAGACCAATATTTTGGATTTGAGGGGAGTACAAAAGCCATATCACCTTCATGAATCTGTGACATTTTTGGAAATTGAAGAGGTCTCTATGATAACTAGGAAGTCCATGTAATGGTCTAGGTCTGCCTGATTTTCAACCTTCACAACACACGGTTTAATGGTTTTGATTAGTTATCACTTATCTACTAAACACCATGATGTGTTATTGTGTTGTGCCATATGTTTCCTATAGTGTTGGCAACGGACGAGATGCAATAATTCATCCTTTTAGGTGCAATGGGATATGAACATTGTTGTCCAGTTTGTTCAGCATAGTATTTTTTTTTTACTCTGAACATTTACCTCAATGATGATGAGATAATGGAAAAAATTGGGTAATTTAAACTTAGTGATTTGGCTTTACTATAATTAAGACCTTGAGCTACTGTACCATAGTTCTAATTCTTGTGCTATCAACCAAGATTGTTGGCAATCTTAGAAATCATTTTATAAGTTTTAACAAGTCTTTGGATGATATCACATTCAGACTTTACCTTTCCCTTAAACCATGTATGGTACTTGCATCTTTTGGTTTCTATGATGTTGATCTTTTTACGAACTTCTGAAAGTCACGAAAGTTGTTTAGTAGCACCACTCAATTAGTTTTAAATATAATTGCTTTCCAACAGTTATGGAACTTATTTATTTTTGCTGTTCCCAATGCAGAAGTCATAGTTGTTATTGCTGTGGTGCAAGTTCCTCGATATGAAGTTGGAACTTATGTCAGCTCCATTCTTTATTTGGTTTTTTGTAGAACCAGGACGTGTTATGTTAGTTTAAGTTTAGTTAATAATCTTGAGAACTTATTTTTTTCAGTACTGACTGGTTTTGGTAACGTATATGCTTTACATACTTTTGAGCCTGAGAAGTAGTAATCAAGAACTTTTTCTTCAAGAGAATATTGTTTATTCTTATGTAAATGATGTCAGTGACTTGGTTAGAATGATGAATTTTACTGTTAATGTTGCTAAACCAAATGCATCTATCTTTTTGGCTTCTGTTATGGAGTCTGAAAATTGGAGAATGGTTTGGGCACCTGGTGGAGTTGTAAACCCAAGTATGCTCATCTGATGATCTGATTTTATGAGGCATGGACATACAGAATAACAGATGCAACAGAAATGAGATACAAAATCATCACCATAGGCTTTTATCTTCTCGAACTTTTTATTGCATGGATCATTTTCTCTTGCTGTTTCAGCTGTATAATTTTCCTACTCTGTAGTCTCTGCATTATTGTTTTGATATTCTGACTAAGGCGATTGGTGCAATCCTAGGCTTCCTGTTCGCTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAGCAATCCCTATCTACCAGAATCTGTTACTGGAGGCACCCCTGCTGCTAATGAGCGGGTGAAGAAAGTGGTAAGAATCTTTTGGTAATGCTGTTTGATTCATACTGAAAAACTTAACAATGGATATAACTAGCTTTTCACTTCTTTCTTTGCAATCCCTTGCACAAACCTCTTTACCTATCCATTTTTTTCTTAAAGCTTGAACTGGAGAGGAAGCGGTTGCAAGTTCGTGGCGTTGGTCAGTGATGGTTATTCATCCTTATCCTTCTTTACTGGGTGACAGGCGATGGCCTGTACTGAGCCTTTTGCTAATTGGGGAGAAGGTATAATCTCTTTTAGAGGCATCTCAGTGTCAGCAATCACGAAGGGATTTAGTGTTTAAGTGGTACCTAATCTGTTGCCAAAGTTTTTACGTTTGTTGAACTTCTGGTTGTTGATTTTCTCCTGTTTATGGACTGCACTGGACACACCCTGGCAAAGCTTTTTGGGGGTCCATATTTAAAGTTTTCCAAGATTTGCTCTGATGCAATGTATCAAATTTGAAATGAGCAAACTCGATGTAATAACTGCCCACCTTTTTTTCAATCATAATGTGGAGAAACTAACCCTGATGTATTTGGAAAATTGCAAGAATAGGTTTCTCA

mRNA sequence

AGAAAAGCCCTAATTTATATGGGGATTAGAAAATTAGAGTCGTTACCCAACTCCTTCAGGAGGAGGAAGCGAAGGTTCCAACTTTTACAGCGAGGAAGAAGGCGAAAATGGCACTGGACGGTAGCGGCAATGGCGATGACTTCACTGTTGGGTCCTTCTTCTCCATTAAGACGACCTTAGGCGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCAGGAGGGTTCGAAGCCAGGCCCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAGTTTTCGTTCTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAAGTGTTACCTCGATCTCAACACTCTCCGTGCTCGAGAGGAACTGGCCATTAGGCAGGCAGAGGCGGAGGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAAAGTATTTTTGACGCCTTATCTAAAACGCTTCCTGTTCGCTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAGCAATCCCTATCTACCAGAATCTGTTACTGGAGGCACCCCTGCTGCTAATGAGCGGGTGAAGAAAGTGCTTGAACTGGAGAGGAAGCGGTTGCAAGTTCGTGGCGTTGGTCAGTGATGGTTATTCATCCTTATCCTTCTTTACTGGGTGACAGGCGATGGCCTGTACTGAGCCTTTTGCTAATTGGGGAGAAGGTATAATCTCTTTTAGAGGCATCTCAGTGTCAGCAATCACGAAGGGATTTAGTGTTTAAGTGGTACCTAATCTGTTGCCAAAGTTTTTACGTTTGTTGAACTTCTGGTTGTTGATTTTCTCCTGTTTATGGACTGCACTGGACACACCCTGGCAAAGCTTTTTGGGGGTCCATATTTAAAGTTTTCCAAGATTTGCTCTGATGCAATGTATCAAATTTGAAATGAGCAAACTCGATGTAATAACTGCCCACCTTTTTTTCAATCATAATGTGGAGAAACTAACCCTGATGTATTTGGAAAATTGCAAGAATAGGTTTCTCA

Coding sequence (CDS)

ATGGCACTGGACGGTAGCGGCAATGGCGATGACTTCACTGTTGGGTCCTTCTTCTCCATTAAGACGACCTTAGGCGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCAGGAGGGTTCGAAGCCAGGCCCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAGTTTTCGTTCTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAAGTGTTACCTCGATCTCAACACTCTCCGTGCTCGAGAGGAACTGGCCATTAGGCAGGCAGAGGCGGAGGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAAAGTATTTTTGACGCCTTATCTAAAACGCTTCCTGTTCGCTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAGCAATCCCTATCTACCAGAATCTGTTACTGGAGGCACCCCTGCTGCTAATGAGCGGGTGAAGAAAGTGCTTGAACTGGAGAGGAAGCGGTTGCAAGTTCGTGGCGTTGGTCAGTGA

Protein sequence

MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLELERKRLQVRGVGQ

Homology

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BLAST of Lcy13g002050 vs. ExPASy Swiss-Prot
Match: Q6PBA2 (Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-14
Identity = 54/166 (32.53%), Postives = 85/166 (51.20%), Query Frame = 0


Query: 7   GNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRR--NIRLLKANYI 66
           G G+ F+VGS  S  T LG   QG+V+ FD PS +L L+  S  G     ++ L+   Y+
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCPSSSGKPNLSDVILINLAYV 64

Query: 67  KEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 126
            E   +    E P  L    +     RAR E   + ++A A  I  GV+ E Q +F  + 
Sbjct: 65  SEVDIINDRTETPPPLASLNISKLANRARTEKEDKLSQAYA--ISAGVSIEGQQLFQTIH 124

Query: 127 KTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLE 169
           KT+   +W +  I+VM++V +S PY  E+  G   +A   ++K++E
Sbjct: 125 KTIKDCKWQEKNIIVMDDVVISPPYQVENCKGKEGSALSHIRKIVE 168

[Close]

BLAST of Lcy13g002050 vs. ExPASy Swiss-Prot
Match: Q6NSN1 (Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-13
Identity = 52/166 (31.33%), Postives = 83/166 (50.00%), Query Frame = 0


Query: 7   GNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRR--NIRLLKANYI 66
           G G+ F+VGS  S  T LG   QG+V+ FD PS +L L+     G     ++ L+   Y+
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCAPSSGKPNLSDVMLVNLAYV 64

Query: 67  KEFSFL-GHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 126
            E   +    E P  L     +    RAR E   + + A A  +  GV+ E Q +F  + 
Sbjct: 65  SEVDIITDRAETPPPLASLNFNKLVNRARAEKEDKLSLAYA--VSAGVSVEGQQLFQTIH 124

Query: 127 KTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLE 169
           KT+   +W +  I+VM++V +S PY  ++  G   +A   V+K++E
Sbjct: 125 KTIKECKWQEKNIIVMDDVVISPPYQVDNCKGKEGSALSHVRKIVE 168

[Close]

BLAST of Lcy13g002050 vs. ExPASy Swiss-Prot
Match: Q6GP89 (Protein LSM12 homolog OS=Xenopus laevis OX=8355 GN=lsm12 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.3e-13
Identity = 51/167 (30.54%), Postives = 85/167 (50.90%), Query Frame = 0


Query: 6   SGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGP--RRNIRLLKANY 65
           +G G+ F +G++ S +T      QG+V+ FD PS +L L+  S  G     +I LL  +Y
Sbjct: 2   AGPGEYFAIGAYVSCRTCQETRLQGEVVAFDYPSKMLALKCPSSSGKANHADILLLNLDY 61

Query: 66  IKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDAL 125
           + +   +    + P  L    L++  L +R  L   +  ++A  I  GV+ + Q +F  +
Sbjct: 62  VSDVEVINERTQTPPPLAS--LNITKLASRARLEKEEKLSQAYAISAGVSLDGQQLFQTI 121

Query: 126 SKTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLE 169
            KT+   +W +  IVVM+EV +S PY  E+  G    A   V K++E
Sbjct: 122 HKTIKDCKWQEKNIVVMDEVVISPPYQVENCKGKEGRALTHVCKIVE 166

[Close]

BLAST of Lcy13g002050 vs. ExPASy Swiss-Prot
Match: Q5ZML5 (Protein LSM12 homolog OS=Gallus gallus OX=9031 GN=LSM12 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 53/177 (29.94%), Postives = 89/177 (50.28%), Query Frame = 0


Query: 9   GDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGP--RRNIRLLKANYIKE 68
           G+ F+VGS  S +T      QG+V+ FD PS +L L+  S  G     +I L+   Y+ E
Sbjct: 5   GECFSVGSQVSCRTCQEQRLQGEVVAFDYPSKMLALKCPSSSGKPNHADILLVNLQYVSE 64

Query: 69  FSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT 128
              +    E P  L    L+++ L  +  +   +  ++A  I  GV+ E Q +F  + KT
Sbjct: 65  VEIINDRTETPPPLAS--LNVSKLANKARMEKEEKLSQAYAISAGVSLEGQQLFQTIHKT 124

Query: 129 L-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLELERKRLQVRGVGQ 182
           +   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E   + ++ + V Q
Sbjct: 125 IKDCKWQEKNIVVMEEVVIAPPYQVENCKGKEGSALGHVRKIVEKHFRDVESQKVMQ 179

[Close]

BLAST of Lcy13g002050 vs. ExPASy Swiss-Prot
Match: Q0VCF9 (Protein LSM12 homolog OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 3.5e-12
Identity = 52/164 (31.71%), Postives = 81/164 (49.39%), Query Frame = 0


Query: 9   GDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGP--RRNIRLLKANYIKE 68
           G+ F+VGS  S +T      QG+V+ FD  S +L L+  S  G     +I L+   Y+ E
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSE 65

Query: 69  FSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT 128
              +    E P  L    +     +AR E   + ++A A  I  GV+ E Q +F  + KT
Sbjct: 66  VEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYA--ISAGVSLEGQQLFQTIHKT 125

Query: 129 L-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLE 169
           +   +W +  IVVM EV ++ PY  E+  G   +A   V+K++E
Sbjct: 126 IKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167

[Close]

BLAST of Lcy13g002050 vs. ExPASy TrEMBL
Match: A0A0A0KQA9 (AD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603270 PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.3e-91
Identity = 175/181 (96.69%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLELERKRLQVRGVG 180
           ALSKTLPVRWDKTVIVVMNEVRVS+PYLPESV+GGTPAANERVKKVLE ERKRLQVRG G
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180

Query: 181 Q 182
           Q
Sbjct: 181 Q 181

[Close]

BLAST of Lcy13g002050 vs. ExPASy TrEMBL
Match: A0A6J1DDK3 (protein LSM12 homolog OS=Momordica charantia OX=3673 GN=LOC111019118 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 6.6e-91
Identity = 174/181 (96.13%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDGSGNGDDF VGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGP RNIRLLK
Sbjct: 1   MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPHRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEF+FLGHGEDPLDLKKCYLDLN+LRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLELERKRLQVRGVG 180
           ALSKTLPVRWDKTVIVVMNEVRVS+PYL ESVTGGTPAANERVKKVLELERKRLQVRG G
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKVLELERKRLQVRGGG 180

Query: 181 Q 182
           Q
Sbjct: 181 Q 181

[Close]

BLAST of Lcy13g002050 vs. ExPASy TrEMBL
Match: A0A6J1GZX6 (protein LSM12 homolog A OS=Cucurbita moschata OX=3662 GN=LOC111458358 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.4e-88
Identity = 172/180 (95.56%), Postives = 175/180 (97.22%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALD SGNGDDF+VGSFFSIKTTLGDEFQ QVITFDRPSNILVLQEGSKPGPRRNIRLLK
Sbjct: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAE EAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEIEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLELERKRLQVRGVG 180
           ALSKTLPVRWDKTVIVVMNEVRVS+PYLPESV+GGTPAANERVKKVLELERKRLQVRG G
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGG 179

[Close]

BLAST of Lcy13g002050 vs. ExPASy TrEMBL
Match: A0A6J1J8S1 (protein LSM12 homolog A OS=Cucurbita maxima OX=3661 GN=LOC111483631 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.1e-88
Identity = 169/181 (93.37%), Postives = 174/181 (96.13%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDG  NGDDFTVGSFFSIKTTLGDEFQGQVITFD  SNIL+LQEGSK GPRRNIRLLK
Sbjct: 1   MALDGCCNGDDFTVGSFFSIKTTLGDEFQGQVITFDAHSNILILQEGSKSGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDP+DLKKCYLD+NTLRAREELAIRQAE EAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPIDLKKCYLDINTLRAREELAIRQAETEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLELERKRLQVRGVG 180
           ALSKTLPVRWDK+VIVVMNEVRVSNPYLPESVTGGTPAAN+RVKKVLELERKRLQVRG G
Sbjct: 121 ALSKTLPVRWDKSVIVVMNEVRVSNPYLPESVTGGTPAANDRVKKVLELERKRLQVRGGG 180

Query: 181 Q 182
           Q
Sbjct: 181 Q 181

[Close]

BLAST of Lcy13g002050 vs. ExPASy TrEMBL
Match: A0A5D3CUL6 (Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00770 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.9e-88
Identity = 170/179 (94.97%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL   EGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL---EGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLELERKRLQVRGV 180
           ALSKTLPVRWDKTVIVVMNEVRV++PYLP+SV+GGTPAANERVKKVLELERKRLQVRGV
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKVLELERKRLQVRGV 176

[Close]

BLAST of Lcy13g002050 vs. NCBI nr
Match: XP_038892233.1 (protein LSM12 homolog A-like [Benincasa hispida])

HSP 1 Score: 348.2 bits (892), Expect = 4.3e-92
Identity = 176/181 (97.24%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLELERKRLQVRGVG 180
           ALSKTLPVRWDKTVIVVMNEVRVS+PYLPESV+GGTPAANERVKKVLELERKRLQVRG G
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGSG 180

Query: 181 Q 182
           Q
Sbjct: 181 Q 181

[Close]

BLAST of Lcy13g002050 vs. NCBI nr
Match: XP_004135229.1 (protein LSM12 homolog A [Cucumis sativus])

HSP 1 Score: 345.5 bits (885), Expect = 2.8e-91
Identity = 175/181 (96.69%), Postives = 178/181 (98.34%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLELERKRLQVRGVG 180
           ALSKTLPVRWDKTVIVVMNEVRVS+PYLPESV+GGTPAANERVKKVLE ERKRLQVRG G
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 180

Query: 181 Q 182
           Q
Sbjct: 181 Q 181

[Close]

BLAST of Lcy13g002050 vs. NCBI nr
Match: XP_022151106.1 (protein LSM12 homolog [Momordica charantia])

HSP 1 Score: 343.2 bits (879), Expect = 1.4e-90
Identity = 174/181 (96.13%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDGSGNGDDF VGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGP RNIRLLK
Sbjct: 1   MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPHRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEF+FLGHGEDPLDLKKCYLDLN+LRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLELERKRLQVRGVG 180
           ALSKTLPVRWDKTVIVVMNEVRVS+PYL ESVTGGTPAANERVKKVLELERKRLQVRG G
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLAESVTGGTPAANERVKKVLELERKRLQVRGGG 180

Query: 181 Q 182
           Q
Sbjct: 181 Q 181

[Close]

BLAST of Lcy13g002050 vs. NCBI nr
Match: KGN52415.2 (hypothetical protein Csa_008581 [Cucumis sativus])

HSP 1 Score: 334.7 bits (857), Expect = 4.9e-88
Identity = 172/181 (95.03%), Postives = 175/181 (96.69%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL   EGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNIL---EGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLELERKRLQVRGVG 180
           ALSKTLPVRWDKTVIVVMNEVRVS+PYLPESV+GGTPAANERVKKVLE ERKRLQVRG G
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLEWERKRLQVRGGG 178

Query: 181 Q 182
           Q
Sbjct: 181 Q 178

[Close]

BLAST of Lcy13g002050 vs. NCBI nr
Match: XP_022956734.1 (protein LSM12 homolog A [Cucurbita moschata] >XP_023540548.1 protein LSM12 homolog A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.7 bits (857), Expect = 4.9e-88
Identity = 172/180 (95.56%), Postives = 175/180 (97.22%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60
           MALD SGNGDDF+VGSFFSIKTTLGDEFQ QVITFDRPSNILVLQEGSKPGPRRNIRLLK
Sbjct: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAE EAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEIEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLELERKRLQVRGVG 180
           ALSKTLPVRWDKTVIVVMNEVRVS+PYLPESV+GGTPAANERVKKVLELERKRLQVRG G
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKVLELERKRLQVRGGG 179

[Close]

BLAST of Lcy13g002050 vs. TAIR 10
Match: AT1G24050.1 (RNA-processing, Lsm domain )

HSP 1 Score: 197.6 bits (501), Expect = 8.7e-51
Identity = 102/174 (58.62%), Postives = 131/174 (75.29%), Query Frame = 0


Query: 7   GNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGP--RRNIRLLKANYI 66
           G G+ F VG+ +S+K   GDEF+G V+ +D   N +  +EG+KP P   +N R++ A++I
Sbjct: 14  GEGEKFAVGNIYSVKVITGDEFRGIVMAYDPIPNFVFFEEGTKPRPGHLKNTRMVNASFI 73

Query: 67  KEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSK 126
              S+LG  EDPLD     +DLN LRA+E LAIRQAEA+AER+GVGVT+EAQSIFDALSK
Sbjct: 74  TGLSYLGKTEDPLDSDNFSVDLNGLRAKEALAIRQAEADAERMGVGVTAEAQSIFDALSK 133

Query: 127 TLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVLELERKRLQVRG 179
           TLPV+W+ + I+VM EVRV +PYL + V GGT AAN RVKKVLELER+RLQ+ G
Sbjct: 134 TLPVQWENSDILVMKEVRVRSPYLSDCVFGGTDAANNRVKKVLELERRRLQLFG 187

[Close]

BLAST of Lcy13g002050 vs. TAIR 10
Match: AT1G70220.1 (RNA-processing, Lsm domain )

HSP 1 Score: 117.1 bits (292), Expect = 1.5e-26
Identity = 74/216 (34.26%), Postives = 110/216 (50.93%), Query Frame = 0


Query: 3   LDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSN---------------------- 62
           +D  G  + F VG  +++K T GD+F G V+ +D   N                      
Sbjct: 11  VDSGGEDEKFEVGKVYAVKLTTGDQFNGIVLAYDSEPNFAVFDILFRNRYSQLVDSYLCY 70

Query: 63  ------------------ILVLQEGSKPGP--RRNIRLLKANYIKEFSFLGHGEDPLDLK 122
                             +++LQEG+KP P   +++R++  NYI E   LG  ++ L  K
Sbjct: 71  FAFLISSSCVCFRVFLDGLVILQEGTKPKPLDSKSLRMVNVNYITEMKNLGRVKERL-AK 130

Query: 123 KCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNE 177
              ++L+ L  +E  AI    +  E+IG GVT+E Q IFDA+SKTLP+RW    ++VM +
Sbjct: 131 NTLVNLDGLIEKENHAI----SNVEKIGFGVTAEGQMIFDAISKTLPIRWVNKEMLVMGD 190

The following BLAST results are available for this feature:

BLAST of Lcy13g002050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBA2	1.7e-14	32.53	Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1	[more]
Q6NSN1	2.4e-13	31.33	Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1	[more]
Q6GP89	5.3e-13	30.54	Protein LSM12 homolog OS=Xenopus laevis OX=8355 GN=lsm12 PE=2 SV=1	[more]
Q5ZML5	1.6e-12	29.94	Protein LSM12 homolog OS=Gallus gallus OX=9031 GN=LSM12 PE=2 SV=1	[more]
Q0VCF9	3.5e-12	31.71	Protein LSM12 homolog OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2	[more]

BLAST of Lcy13g002050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQA9	1.3e-91	96.69	AD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603270 PE=3 SV=...	[more]
A0A6J1DDK3	6.6e-91	96.13	protein LSM12 homolog OS=Momordica charantia OX=3673 GN=LOC111019118 PE=3 SV=1	[more]
A0A6J1GZX6	2.4e-88	95.56	protein LSM12 homolog A OS=Cucurbita moschata OX=3662 GN=LOC111458358 PE=3 SV=1	[more]
A0A6J1J8S1	3.1e-88	93.37	protein LSM12 homolog A OS=Cucurbita maxima OX=3661 GN=LOC111483631 PE=3 SV=1	[more]
A0A5D3CUL6	6.9e-88	94.97	Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Lcy13g002050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892233.1	4.3e-92	97.24	protein LSM12 homolog A-like [Benincasa hispida]	[more]
XP_004135229.1	2.8e-91	96.69	protein LSM12 homolog A [Cucumis sativus]	[more]
XP_022151106.1	1.4e-90	96.13	protein LSM12 homolog [Momordica charantia]	[more]
KGN52415.2	4.9e-88	95.03	hypothetical protein Csa_008581 [Cucumis sativus]	[more]
XP_022956734.1	4.9e-88	95.56	protein LSM12 homolog A [Cucurbita moschata] >XP_023540548.1 protein LSM12 homol...	[more]

BLAST of Lcy13g002050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24050.1	8.7e-51	58.62	RNA-processing, Lsm domain	[more]
AT1G70220.1	1.5e-26	34.26	RNA-processing, Lsm domain	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019181	Anticodon-binding domain	SMART	SM00995	AD_2	coord: 80..166 e-value: 5.3E-31 score: 119.0
IPR019181	Anticodon-binding domain	PFAM	PF09793	AD	coord: 84..166 e-value: 1.4E-23 score: 82.8
IPR039683	Protein Lsm12-like	PANTHER	PTHR13542	LSM12 HOMOLOG	coord: 7..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g002050.1	Lcy13g002050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030574	collagen catabolic process
biological_process	GO:0030198	extracellular matrix organization
biological_process	GO:0006508	proteolysis
cellular_component	GO:0031012	extracellular matrix
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008270	zinc ion binding