Lcy13g001690 (gene) Sponge gourd (P93075) v1

Overview
NameLcy13g001690
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUbiquitin
LocationChr13: 1567656 .. 1571861 (+)
RNA-Seq ExpressionLcy13g001690
SyntenyLcy13g001690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCTTTTCCTTGTGCAAAGAAGTTTTTCAAAGCAGACATCATGGTAAAAACTCACTGCACTTTCACTTTCACCAGTCCTCTGCAGCTGTTGGTTGGAAAAATTGATGGAGAAAAAACGACAGATGAAGCAAACAAGCACCACTCATCCAACTTCATTGAACTTTGGACTCTGACCCCAACATCCTAAAACTCTTGCAAGTGTTTTTCAGCATTTAATAACTCCTTACATTCAAACTTTAATGCCAAACTTCTCCATAACATTGCAATGTCACAACAAATCTTCTATAAATTTGGACCTTTCCTTCTTAGAACACTCTATGCCTTGCTTTTCTCCCTCTAAAGTCTAACCTACAAACTCAGAGAGATTTTGATTCTAAAACAATGAACCATCTCTTTGAACTACCTGAACAGATTTAGGAAAAGAACTTTGAACTAAGTCACTCCCTTTTAGCAAACTTACAAAGCCAAAAGATGTGAAGCACATCTTCCCTAGATTGACCATAATGAGCACAACAATTCACAATATCAATGCCCTTTGGATTAAATTCACATTCACAGGTAATTGATTTAGACAAAGTCGCCATACAAATATTGTAAGCTTACTAGGAATAACCATGTTCCACATACCTTTCCACCAACTGGAAATAGCAGACGGGGAGGATGAAGCACGAAGAGCAATATCATCAGATTGTGCCAAACAATAACCACTACATACTGAAAAAAGACCATTAGCTTCAGAATGCCATATATAACGATTTGGTATCGAAACATCACCCAGAGGAATAGAAAGGATAACTGCTGCATCTTCTGGAGAAAAAAGTTGTTGGATCCTTGGTGCATCCCACTGCCCCGAAACCGAGAACAGCGAATTGACGATAGAATCAAGTGGATGTTTAGGCTTTGAAAGAATCATTCAAGAGGAACCTCGAATAAGCCAGTTGTCGCCATATATCTTGACCGAAGAACCATTACCAATACGCTAACGAAGAGCCCGAACCAACAACTCCCGGCCCCATAATAAGCTCCTCCAAATGAAAGATGGACGCCCACCAATCTTAGCATGAAGGAAATCAGACCGAGGGAAATATCTCGCCTTTAAAACCTTCCCCAACATAGAATCCGCATGAAGGATCAACCTCCATCCTTGTTTAGCCAATAAAGGTCGGTAAAAATGCTCTTAATTGCAAAAACCCAAACCACCGAGACATTTAGGAAGACACATAAAATCCCAACCAACCCAATGAAGTTTATTGCCATCATCCGCACCATTCCACCAAAAGCGGGCCATTAGAAGGTGAAAATCCTTAATAAGACTCCTAGGCAATCACAAGCAATTCATTGTGTAACAAGGAATGACTTGAATCACAGCTTTGATGAGAATAGCTCTGCCACCCACTGAAAAAAGTTTCCCCTTCCAACCCTCAAGCAGTTTCCGAACTCTGTCCTTCAGAAAACCCAAAGTCTCACATCTGTTACGAGGCATGAATGAAGGGAGGCCAAGATACTTTTGATGGCACTGAACATGATTAATCTTGAAGCACCCATTGATCGCCCTCTGAACCTGAACATGAAGCCTTCTCATAAGCTCTAAGGATTTCTCTGAGGCGGGCTCCTTTTGGGACGGTGGCACGAAAAAACAGAAGACTATCATCGACAAAAAACAAATGAGAAATGGAAGGACCCCCTCGAGAAATAGAGAAACCCAAAATATCCCGTAGTCTTTCAGCTTGTTGCAAACACACATGACAACCCCTCAGCACAAAAAGGAACAAGTATGGAAAAAGAGGATCCCTTGTCGAAGGCCTCGAGTCAGCACAATATTCCCCAAATAATCACCATTTAAATTAAACGAATATTAAACCGAAGCAATACATCGATGGATAAATTCGACCCAGGTAGGGGAAAACCCCAAAGACAACATAATCCTCTTCATGAAAAACCACTCGTAGGCCTTGCTCATGTCCAGTTTCTAGGTACCCTAGCAAGATTTACACGAACGACAGGTTTGAAGGGCATGGATACACTCATAACCCAAGATTGCATTATCCACTACACAACGACTAGGAATAAAGGCACTTTGATTTTCAGAAATTATATAGTTCAACATTTCTTTCATACGATTAACTATAGCCTTCGACACAAGTTTATAAATCACATTACATAGGACTATAGGCCTAAAATCATAAACTTGATGGGGAGCTTTGACCTTTGGGATAAAGCTTTGGGATAAGAACGAGCAGTGTCTTATTGATGGGAGCAGAGGAAGATTGATTGTTAAGAATCTGCAGACAACAGTTAGTAACATCAGCTCCAACAATGCCTCAATGATTCCGATAGAAAGATCCAGAAAGACCATCAGGCCAGGAGATTTCGAAGGATGAATTTGGTGGAGAGCAACCCAAACATCTTCCCCCTGTGAAAGGCCTTAACATTATCACCAACCCTTCTATGCACGTGACATTATGAATTTTCCAGACAGACTTAATCACTGACCGAAATGCCTCAACATTGACCCGTTTGCTGGTGAGAAGCTTACCTACTGCACAAAAGTTAACATTAGTTGGGGACAATACTGGGCTATCTTTCATAACCCTGACCCTTTCAATTTCCTCCTCCGTTAAAGAGAAAGCCTTCCACGTTTCGTAAGATCATCCATCGACATGAATCTGCAACAACACAGAGACTCACCAACCACACCACCAGTTCCACTCAGGGGAACCAGCCAACTCTCAGATAGAGAGAAAACCTGTACACGACAGGACCAAACATTGAAACATTTATTATATTTTTATTCTAAAAAATATTAAATGATTATTTTATTATTTTTATTTTATCAATACAATTTCAAGTTCATTTTCACAACCCAAATTACTTCATAAGTTTGTGTGTGTGATCCCATTTATTTGTTTTCTCACATATTTTTAAAACACACATTTTAAATTGAAGGCAAATATTACCAACTAAGGGTGTTTCTATAATATATATATATATATATATATATATATATAGCCAACAAAAACATAGCTTAGCTGATATAAAACTTGTATTCTTAACTAACAGGTTAAAAAATTAAATCTCTCATCTCACATGTTGTCAAAATATAATATGTATGTACCAAAACTCACGTTTCTGGCCAACATGAGCTTAGCTCAACTGACATAAAGTTATACACGTTTCTATTTTTCCTTTTTCTTTGTGAAATTATTTACAATTTTATATTACATTTTATAAAACAAATTAAACTTATCAAACCTATCAAAACGCATGTTTTTTTTTTCAAGTTTTAAAAGAAAACCCGAACATAGAAATTATACTTTTTTTTTTTAAACACATAGAAATTATACTTTTATTTAAGAAGTAATATTGGCAAAAGCAGATATTATAAGTTGTTTTTTTAGCAAAATAATAAGTTGATTTTGATTTTGATTTTTTTTTTTTTTTTTTTTGAGAAAAATTATAAGTTGAAATTTTAAACCCTTTTAAAACTCAAAAAGAAAAAAAAGTTTATATTAAAAAAGAAAAAAAAGCCCAAACGTTTATGAAACAAAGCGTAGAAGAAAAATGTAAATATTATAAAATTTTGGGCTTGAAAATTAAAATTAAAATATATTAAAAAGCCGAAAGGATCCCAGAAACCCTAATGCCCTACCTATAAAAGCCAACCATTCTTCTCCCCAAACCCTTGTTATTCCAATTCAGCCGTGCGGCTCTGCAACCAAACCTCCCAAGCATGCAGATCTTTGTGAAAACCCTAACGGGTAAGACCATCACTCTCGAGGTCGAGAGTTCTGATACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTGATTTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTCGCCGACTACAACATCCAGAAGGAATCCACTCTCCACCTCGTGCTCCGTCTCAGGGGGGGCGCCAAGAAGCGTAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTCAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGATGACTCTGGAAAGGTGCAGAGGCTCAGGAAGGAGTGCCCTAATGCCGAGTGCGGCGCTGGAACTTTCATGGCCAACCACTTTGATCGCCACTACTGTGGAAAGTGTGGTTTGACCTATGTTTACAACAAAGCTGGTGGTGATTAG

mRNA sequence

ATGCCTCCTTTTCCTTGTGCAAAGAAGTTTTTCAAAGCAGACATCATGACAGACTTAATCACTGACCGAAATGCCTCAACATTGACCCGTTTGCTGGTGAGAAGCTTACCTACTGCACAAAAGTTAACATTAGTTGGGGACAATACTGGGCTATCTTTCATAACCCTGACCCTTTCAATTTCCTCCTCCGTTAAAGAGAAAGCCTTCCACGTTTCGGGGGGCGCCAAGAAGCGTAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTCAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGATGACTCTGGAAAGGTGCAGAGGCTCAGGAAGGAGTGCCCTAATGCCGAGTGCGGCGCTGGAACTTTCATGGCCAACCACTTTGATCGCCACTACTGTGGAAAGTGTGGTTTGACCTATGTTTACAACAAAGCTGGTGGTGATTAG

Coding sequence (CDS)

ATGCCTCCTTTTCCTTGTGCAAAGAAGTTTTTCAAAGCAGACATCATGACAGACTTAATCACTGACCGAAATGCCTCAACATTGACCCGTTTGCTGGTGAGAAGCTTACCTACTGCACAAAAGTTAACATTAGTTGGGGACAATACTGGGCTATCTTTCATAACCCTGACCCTTTCAATTTCCTCCTCCGTTAAAGAGAAAGCCTTCCACGTTTCGGGGGGCGCCAAGAAGCGTAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGCACAAGAAGGTCAAGCTCGCCGTCCTCCAGTTCTACAAGGTCGATGACTCTGGAAAGGTGCAGAGGCTCAGGAAGGAGTGCCCTAATGCCGAGTGCGGCGCTGGAACTTTCATGGCCAACCACTTTGATCGCCACTACTGTGGAAAGTGTGGTTTGACCTATGTTTACAACAAAGCTGGTGGTGATTAG

Protein sequence

MPPFPCAKKFFKADIMTDLITDRNASTLTRLLVRSLPTAQKLTLVGDNTGLSFITLTLSISSSVKEKAFHVSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Homology
[Close]
BLAST of Lcy13g001690 vs. ExPASy Swiss-Prot
Match: P62980 (Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum OX=4081 GN=UBI3 PE=1 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-41
Identity = 85/102 (83.33%), Postives = 89/102 (87.25%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVDD+GKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 155
           QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 115 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of Lcy13g001690 vs. ExPASy Swiss-Prot
Match: P62981 (Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum OX=4113 GN=UBI3 PE=2 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-41
Identity = 85/102 (83.33%), Postives = 89/102 (87.25%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHK KKVKLAVLQFYKVDD+GKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 155
           QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 115 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of Lcy13g001690 vs. ExPASy Swiss-Prot
Match: P47905 (Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus OX=3870 PE=3 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-38
Identity = 81/99 (81.82%), Postives = 84/99 (84.85%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKA 152
           QRLRKECPN ECGAGTFMANHFDRHYCGKCG TYVY KA
Sbjct: 115 QRLRKECPNTECGAGTFMANHFDRHYCGKCGKTYVYQKA 153

[Close]
BLAST of Lcy13g001690 vs. ExPASy Swiss-Prot
Match: P59232 (Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27AB PE=2 SV=2)

HSP 1 Score: 158.3 bits (399), Expect = 7.0e-38
Identity = 80/100 (80.00%), Postives = 84/100 (84.00%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVD SGKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 153
           QRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 115 QRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]
BLAST of Lcy13g001690 vs. ExPASy Swiss-Prot
Match: P59233 (Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27AC PE=2 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 9.1e-38
Identity = 79/100 (79.00%), Postives = 84/100 (84.00%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYK+D SGKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 153
           QRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 115 QRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]
BLAST of Lcy13g001690 vs. ExPASy TrEMBL
Match: A0A6J1HTL0 (Ubiquitin OS=Cucurbita maxima OX=3661 GN=LOC111466472 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.5e-40
Identity = 87/102 (85.29%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 155
           QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 115 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of Lcy13g001690 vs. ExPASy TrEMBL
Match: A0A4D9ASK9 (Ubiquitin OS=Salvia splendens OX=180675 GN=RP-S27Ae PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.5e-40
Identity = 87/102 (85.29%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 155
           QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 115 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of Lcy13g001690 vs. ExPASy TrEMBL
Match: A0A6J1GXP3 (Ubiquitin OS=Cucurbita moschata OX=3662 GN=LOC111458454 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.5e-40
Identity = 87/102 (85.29%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 155
           QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 115 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of Lcy13g001690 vs. ExPASy TrEMBL
Match: A0A5A7SUY8 (Ubiquitin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001130 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.5e-40
Identity = 87/102 (85.29%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 155
           QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 115 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of Lcy13g001690 vs. ExPASy TrEMBL
Match: E5GBI4 (Ubiquitin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.5e-40
Identity = 87/102 (85.29%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 155
           QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 115 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of Lcy13g001690 vs. NCBI nr
Match: PHT59822.1 (Ubiquitin-40S ribosomal protein S27a [Capsicum baccatum])

HSP 1 Score: 174.1 bits (440), Expect = 9.4e-40
Identity = 87/102 (85.29%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV
Sbjct: 82  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 141

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 155
           QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 142 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 183

[Close]
BLAST of Lcy13g001690 vs. NCBI nr
Match: XP_016554632.1 (PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Capsicum annuum] >ABK42077.1 ubiquitin extension protein [Capsicum annuum])

HSP 1 Score: 174.1 bits (440), Expect = 9.4e-40
Identity = 87/102 (85.29%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV
Sbjct: 78  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 137

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 155
           QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 138 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 179

[Close]
BLAST of Lcy13g001690 vs. NCBI nr
Match: NP_001269170.1 (ubiquitin-40S ribosomal protein S27a-like [Cucumis sativus] >XP_008446192.1 PREDICTED: ubiquitin-40S ribosomal protein S27a [Cucumis melo] >XP_022151041.1 ubiquitin-40S ribosomal protein S27a [Momordica charantia] >XP_022944801.1 ubiquitin-40S ribosomal protein S27a [Cucurbita moschata] >XP_022956912.1 ubiquitin-40S ribosomal protein S27a [Cucurbita moschata] >XP_022966908.1 ubiquitin-40S ribosomal protein S27a [Cucurbita maxima] >XP_022994820.1 ubiquitin-40S ribosomal protein S27a [Cucurbita maxima] >XP_023511766.1 ubiquitin-40S ribosomal protein S27a [Cucurbita pepo subsp. pepo] >XP_023542935.1 ubiquitin-40S ribosomal protein S27a [Cucurbita pepo subsp. pepo] >XP_038893211.1 ubiquitin-40S ribosomal protein S27a [Benincasa hispida] >XP_041999464.1 ubiquitin-40S ribosomal protein S27a [Salvia splendens] >XP_042004337.1 ubiquitin-40S ribosomal protein S27a [Salvia splendens] >XP_042063578.1 ubiquitin-40S ribosomal protein S27a [Salvia splendens] >ADN33826.1 ubiquitin extension protein [Cucumis melo subsp. melo] >KAA0034303.1 ubiquitin-40S ribosomal protein S27a-like [Cucumis melo var. makuwa] >KAF3629003.1 Ubiquitin-40S ribosomal protein S27a [Capsicum annuum] >KAG6573732.1 Ubiquitin-40S ribosomal protein S27a, partial [Cucurbita argyrosperma subsp. sororia] >KAG8387388.1 hypothetical protein BUALT_Bualt02G0016100 [Buddleja alternifolia] >KAG9157188.1 hypothetical protein Leryth_004865 [Lithospermum erythrorhizon] >PHU30403.1 Ubiquitin-40S ribosomal protein S27a [Capsicum chinense] >CAA2994933.1 Ubiquitin-40S ribosomal S27a [Olea europaea subsp. europaea])

HSP 1 Score: 174.1 bits (440), Expect = 9.4e-40
Identity = 87/102 (85.29%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 155
           QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 115 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of Lcy13g001690 vs. NCBI nr
Match: XP_042057148.1 (ubiquitin-40S ribosomal protein S27a-like [Salvia splendens])

HSP 1 Score: 174.1 bits (440), Expect = 9.4e-40
Identity = 87/102 (85.29%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV
Sbjct: 103 TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 162

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 155
           QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 163 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 204

[Close]
BLAST of Lcy13g001690 vs. NCBI nr
Match: KAG6601511.1 (Ubiquitin-40S ribosomal protein S27a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.1 bits (440), Expect = 9.4e-40
Identity = 87/102 (85.29%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV
Sbjct: 116 TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 175

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 155
           QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD
Sbjct: 176 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 217

[Close]
BLAST of Lcy13g001690 vs. TAIR 10
Match: AT2G47110.1 (ubiquitin 6 )

HSP 1 Score: 158.3 bits (399), Expect = 4.9e-39
Identity = 80/100 (80.00%), Postives = 84/100 (84.00%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVD SGKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 153
           QRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 115 QRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]
BLAST of Lcy13g001690 vs. TAIR 10
Match: AT2G47110.2 (ubiquitin 6 )

HSP 1 Score: 158.3 bits (399), Expect = 4.9e-39
Identity = 80/100 (80.00%), Postives = 84/100 (84.00%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVD SGKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 153
           QRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 115 QRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]
BLAST of Lcy13g001690 vs. TAIR 10
Match: AT3G62250.1 (ubiquitin 5 )

HSP 1 Score: 157.9 bits (398), Expect = 6.5e-39
Identity = 79/100 (79.00%), Postives = 84/100 (84.00%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYK+D SGKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAG 153
           QRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVY K G
Sbjct: 115 QRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]
BLAST of Lcy13g001690 vs. TAIR 10
Match: AT1G23410.1 (Ribosomal protein S27a / Ubiquitin family protein )

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-35
Identity = 73/99 (73.74%), Postives = 80/99 (80.81%), Query Frame = 0 

Query: 57  TLSISSSVKEKAFH----VSGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKV 116
           TL+  +  KE   H    + GGAKKRKKKTYTKPKKIKH HKKVKLAVLQFYKVD SGKV
Sbjct: 55  TLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHTHKKVKLAVLQFYKVDGSGKV 114

Query: 117 QRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKA 152
           QRL+KECP+  CG GTFMA+HFDRHYCGKCG TYV+ KA
Sbjct: 115 QRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKA 153

The following BLAST results are available for this feature:
BLAST of Lcy13g001690 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P629803.0e-4183.33Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum OX=4081 GN=UBI3 PE=... [more]
P629813.0e-4183.33Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum OX=4113 GN=UBI3 PE=2 S... [more]
P479051.1e-3881.82Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus OX=3870 PE=3 SV=2[more]
P592327.0e-3880.00Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27A... [more]
P592339.1e-3879.00Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27A... [more]
BLAST of Lcy13g001690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HTL04.5e-4085.29Ubiquitin OS=Cucurbita maxima OX=3661 GN=LOC111466472 PE=3 SV=1[more]
A0A4D9ASK94.5e-4085.29Ubiquitin OS=Salvia splendens OX=180675 GN=RP-S27Ae PE=3 SV=1[more]
A0A6J1GXP34.5e-4085.29Ubiquitin OS=Cucurbita moschata OX=3662 GN=LOC111458454 PE=3 SV=1[more]
A0A5A7SUY84.5e-4085.29Ubiquitin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001130 PE=3... [more]
E5GBI44.5e-4085.29Ubiquitin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
BLAST of Lcy13g001690 vs. NCBI nr
Match NameE-valueIdentityDescription
PHT59822.19.4e-4085.29Ubiquitin-40S ribosomal protein S27a [Capsicum baccatum][more]
XP_016554632.19.4e-4085.29PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Capsicum annuum] >ABK42077... [more]
NP_001269170.19.4e-4085.29ubiquitin-40S ribosomal protein S27a-like [Cucumis sativus] >XP_008446192.1 PRED... [more]
XP_042057148.19.4e-4085.29ubiquitin-40S ribosomal protein S27a-like [Salvia splendens][more]
KAG6601511.19.4e-4085.29Ubiquitin-40S ribosomal protein S27a, partial [Cucurbita argyrosperma subsp. sor... [more]
BLAST of Lcy13g001690 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G47110.14.9e-3980.00ubiquitin 6 [more]
AT2G47110.24.9e-3980.00ubiquitin 6 [more]
AT3G62250.16.5e-3979.00ubiquitin 5 [more]
AT1G23410.12.5e-3573.74Ribosomal protein S27a / Ubiquitin family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002906Ribosomal protein S27aSMARTSM01402Ribosomal_S27_2coord: 100..145
e-value: 3.1E-28
score: 109.8
IPR002906Ribosomal protein S27aPFAMPF01599Ribosomal_S27coord: 100..145
e-value: 1.7E-26
score: 91.9
IPR038582S27a-like superfamilyGENE3D6.20.50.150coord: 77..152
e-value: 2.1E-40
score: 139.0
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 70..144
NoneNo IPR availablePANTHERPTHR10666:SF363UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1coord: 70..144
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 98..151

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy13g001690.1Lcy13g001690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome