Lcy13g000870 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g000870
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Mitotic spindle checkpoint protein MAD2
Location	Chr13: 839051 .. 839362 (+)
RNA-Seq Expression	Lcy13g000870
Synteny	Lcy13g000870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTAAATAACGACCATCCCATAATTAGAAACTTCCAAGTAAATTTATCTTCAAAATTCCAGAATTTTGATGAGAAGCCGAGAGGAGAAGCTGCTAAGAAAGAAAGGAAAAAGAAAAACATGAGTTTAGATGGTGGTCTGTCTTGGGCAGATCAATGGGATAACAACCCCGACCCGCCACCGCCGTCGTCGTCGGAAAACGAGAAGAACAAGAACAAGAACGGGTCCTCCGACAAGAGCAAATTTAGGAAGACAATCTTGAGCTTCAAGTGGATGAAAGAACTCAGAAAGAAATCTGATAAATCTTGA

mRNA sequence

ATGTTTCTAAATAACGACCATCCCATAATTAGAAACTTCCAAGTAAATTTATCTTCAAAATTCCAGAATTTTGATGAGAAGCCGAGAGGAGAAGCTGCTAAGAAAGAAAGGAAAAAGAAAAACATGAGTTTAGATGGTGGTCTGTCTTGGGCAGATCAATGGGATAACAACCCCGACCCGCCACCGCCGTCGTCGTCGGAAAACGAGAAGAACAAGAACAAGAACGGGTCCTCCGACAAGAGCAAATTTAGGAAGACAATCTTGAGCTTCAAGTGGATGAAAGAACTCAGAAAGAAATCTGATAAATCTTGA

Coding sequence (CDS)

ATGTTTCTAAATAACGACCATCCCATAATTAGAAACTTCCAAGTAAATTTATCTTCAAAATTCCAGAATTTTGATGAGAAGCCGAGAGGAGAAGCTGCTAAGAAAGAAAGGAAAAAGAAAAACATGAGTTTAGATGGTGGTCTGTCTTGGGCAGATCAATGGGATAACAACCCCGACCCGCCACCGCCGTCGTCGTCGGAAAACGAGAAGAACAAGAACAAGAACGGGTCCTCCGACAAGAGCAAATTTAGGAAGACAATCTTGAGCTTCAAGTGGATGAAAGAACTCAGAAAGAAATCTGATAAATCTTGA

Protein sequence

MFLNNDHPIIRNFQVNLSSKFQNFDEKPRGEAAKKERKKKNMSLDGGLSWADQWDNNPDPPPPSSSENEKNKNKNGSSDKSKFRKTILSFKWMKELRKKSDKS

Homology

[Close]

BLAST of Lcy13g000870 vs. ExPASy TrEMBL
Match: A0A0A0KVC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G590180 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.8e-20
Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 42  MSLDGGLSWADQWDNNPDPPPPSSSENEKNKNKNGSSDKSKFRKTILSFKWMKELRKKSD 101
           M LDGGLSWADQWD NPD PPPSSSENEK KNK+GSSDKSKFRKTIL FKWMKELRKKSD
Sbjct: 1   MGLDGGLSWADQWDYNPD-PPPSSSENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSD 60

Query: 102 KS 104
           KS
Sbjct: 61  KS 61

[Close]

BLAST of Lcy13g000870 vs. ExPASy TrEMBL
Match: A0A1S3BE81 (uncharacterized protein LOC103488917 OS=Cucumis melo OX=3656 GN=LOC103488917 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.6e-19
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 42  MSLDGGLSWADQWDNNPDPPPPSSSENEKNKNKNGSSDKSKFRKTILSFKWMKELRKKSD 101
           M LDGGLSWADQWD NPD PPPSSS+N+K KNK+GSSDKSKFRKTIL FKWMK+LRKKSD
Sbjct: 1   MGLDGGLSWADQWDYNPD-PPPSSSDNDKKKNKDGSSDKSKFRKTILGFKWMKDLRKKSD 60

Query: 102 KS 104
           KS
Sbjct: 61  KS 61

[Close]

BLAST of Lcy13g000870 vs. ExPASy TrEMBL
Match: A0A5A7STC2 (Mitotic spindle checkpoint protein MAD2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G002160 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.3e-18
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 40  KNMSLDGGLSWADQWDNNPDPPPPSSSENEKNKNKNGSSDKSKFRKTILSFKWMKELRKK 99
           KN   DGGLSWADQWD NPD PPPSSS+N+K KNK+GSSDKSKFRKTIL FKWMK+LRKK
Sbjct: 200 KNDDDDGGLSWADQWDYNPD-PPPSSSDNDKKKNKDGSSDKSKFRKTILGFKWMKDLRKK 259

Query: 100 SDKS 104
           SDKS
Sbjct: 260 SDKS 262

[Close]

BLAST of Lcy13g000870 vs. ExPASy TrEMBL
Match: A0A5D3CWF2 (Mitotic spindle checkpoint protein MAD2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001990 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 45  DGGLSWADQWDNNPDPPPPSSSENEKNKNKNGSSDKSKFRKTILSFKWMKELRKKSDKS 104
           DGGLSWADQWD NPD PPPSSS+N+K KNK+GSSDKSKFRKTIL FKWMK+LRKKSDKS
Sbjct: 246 DGGLSWADQWDYNPD-PPPSSSDNDKKKNKDGSSDKSKFRKTILGFKWMKDLRKKSDKS 303

[Close]

BLAST of Lcy13g000870 vs. ExPASy TrEMBL
Match: A0A314ZLJ7 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_33641 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.2e-13
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 44  LDGGLSWADQWDNNPDPPPPSSSENEKNKNKNGSSDKSKFRKTILSFKWMKELRKKSDK 103
           +D GLSWADQWDNNPDPPPP SSEN+K K K+GS  KS F K ILSFKW+++LRKKS K
Sbjct: 1   MDSGLSWADQWDNNPDPPPPGSSENDKKKGKDGS--KSSFGKAILSFKWVEKLRKKSSK 57

[Close]

BLAST of Lcy13g000870 vs. NCBI nr
Match: XP_038892905.1 (uncharacterized protein LOC120081808 [Benincasa hispida])

HSP 1 Score: 110.5 bits (275), Expect = 8.5e-21
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 42  MSLDGGLSWADQWDNNPDPPPPSSSENEKNKNKNGSSDKSKFRKTILSFKWMKELRKKSD 101
           M LDGGLSWADQWDNNPDPPP SSSENEK KNK+GSS+K KFRKTIL FKWMKELRKKSD
Sbjct: 1   MGLDGGLSWADQWDNNPDPPPSSSSENEKKKNKDGSSEKGKFRKTILGFKWMKELRKKSD 60

Query: 102 KS 104
           KS
Sbjct: 61  KS 62

[Close]

BLAST of Lcy13g000870 vs. NCBI nr
Match: XP_004135510.1 (uncharacterized protein LOC101219061 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 42  MSLDGGLSWADQWDNNPDPPPPSSSENEKNKNKNGSSDKSKFRKTILSFKWMKELRKKSD 101
           M LDGGLSWADQWD NPD PPPSSSENEK KNK+GSSDKSKFRKTIL FKWMKELRKKSD
Sbjct: 1   MGLDGGLSWADQWDYNPD-PPPSSSENEKKKNKDGSSDKSKFRKTILGFKWMKELRKKSD 60

Query: 102 KS 104
           KS
Sbjct: 61  KS 61

[Close]

BLAST of Lcy13g000870 vs. NCBI nr
Match: XP_008446089.1 (PREDICTED: uncharacterized protein LOC103488917 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-18
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 42  MSLDGGLSWADQWDNNPDPPPPSSSENEKNKNKNGSSDKSKFRKTILSFKWMKELRKKSD 101
           M LDGGLSWADQWD NPD PPPSSS+N+K KNK+GSSDKSKFRKTIL FKWMK+LRKKSD
Sbjct: 1   MGLDGGLSWADQWDYNPD-PPPSSSDNDKKKNKDGSSDKSKFRKTILGFKWMKDLRKKSD 60

Query: 102 KS 104
           KS
Sbjct: 61  KS 61

[Close]

BLAST of Lcy13g000870 vs. NCBI nr
Match: KAA0034220.1 (mitotic spindle checkpoint protein MAD2 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 8.8e-18
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 40  KNMSLDGGLSWADQWDNNPDPPPPSSSENEKNKNKNGSSDKSKFRKTILSFKWMKELRKK 99
           KN   DGGLSWADQWD NPD PPPSSS+N+K KNK+GSSDKSKFRKTIL FKWMK+LRKK
Sbjct: 200 KNDDDDGGLSWADQWDYNPD-PPPSSSDNDKKKNKDGSSDKSKFRKTILGFKWMKDLRKK 259

Query: 100 SDKS 104
           SDKS
Sbjct: 260 SDKS 262

[Close]

BLAST of Lcy13g000870 vs. NCBI nr
Match: TYK15700.1 (mitotic spindle checkpoint protein MAD2 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 3.3e-17
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 45  DGGLSWADQWDNNPDPPPPSSSENEKNKNKNGSSDKSKFRKTILSFKWMKELRKKSDKS 104
           DGGLSWADQWD NPD PPPSSS+N+K KNK+GSSDKSKFRKTIL FKWMK+LRKKSDKS
Sbjct: 246 DGGLSWADQWDYNPD-PPPSSSDNDKKKNKDGSSDKSKFRKTILGFKWMKDLRKKSDKS 303

[Close]

BLAST of Lcy13g000870 vs. TAIR 10
Match: AT1G67670.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24405.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 44  LDGGLSWADQWD-NNPDPPPPSSSENE-KNKNKNGSSD---KSKFRKTILSFKWMKELRK 103
           +D G SWADQWD NNPDP P S+ E+E K KNK    +   KS   KT+L FKWMKELRK
Sbjct: 1   MDSGPSWADQWDYNNPDPLPSSTKEDESKKKNKKKKEEDGSKSSLGKTLLGFKWMKELRK 60

[Close]

BLAST of Lcy13g000870 vs. TAIR 10
Match: AT1G24405.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 5.5e-10
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 44  LDGGLSWADQWDNNPDPPPPSSSENEKNKNKNGSSD---KSKFRKTILSFKWMKELRKKS 103
           +D GLSWADQWD N DPPP SS+E++K K K    +   KS   K IL FKWMK L KKS
Sbjct: 1   MDSGLSWADQWDYNSDPPPNSSNEDDKKKKKKKKKEDGSKSGIGKAILGFKWMK-LGKKS 60

The following BLAST results are available for this feature:

BLAST of Lcy13g000870 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy13g000870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVC1	7.8e-20	90.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G590180 PE=4 SV=1	[more]
A0A1S3BE81	8.6e-19	85.48	uncharacterized protein LOC103488917 OS=Cucumis melo OX=3656 GN=LOC103488917 PE=...	[more]
A0A5A7STC2	4.3e-18	82.81	Mitotic spindle checkpoint protein MAD2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3CWF2	1.6e-17	86.44	Mitotic spindle checkpoint protein MAD2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A314ZLJ7	3.2e-13	72.88	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_336...	[more]

BLAST of Lcy13g000870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892905.1	8.5e-21	88.71	uncharacterized protein LOC120081808 [Benincasa hispida]	[more]
XP_004135510.1	1.6e-19	90.32	uncharacterized protein LOC101219061 [Cucumis sativus]	[more]
XP_008446089.1	1.8e-18	85.48	PREDICTED: uncharacterized protein LOC103488917 [Cucumis melo]	[more]
KAA0034220.1	8.8e-18	82.81	mitotic spindle checkpoint protein MAD2 [Cucumis melo var. makuwa]	[more]
TYK15700.1	3.3e-17	86.44	mitotic spindle checkpoint protein MAD2 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy13g000870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67670.1	1.1e-10	60.94	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G24405.1	5.5e-10	59.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..43
None	No IPR available	PANTHER	PTHR33386	OS02G0740600 PROTEIN	coord: 45..102
None	No IPR available	PANTHER	PTHR33386:SF1	F12A21.18-RELATED	coord: 45..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g000870.1	Lcy13g000870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0007094	mitotic spindle assembly checkpoint signaling
cellular_component	GO:0005634	nucleus