Lcy13g000340 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g000340
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	U5 small nuclear ribonucleoprotein 40 kDa protein
Location	Chr13: 339503 .. 343116 (+)
RNA-Seq Expression	Lcy13g000340
Synteny	Lcy13g000340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGTGGTCGGTCAATCTGCACGGCAGGGCTCACAGCTGAGCAAACACCAGTCGAAGCGAATACCATTAGGGTTTTGGTTTTTGTGCTGATCTTCAAGGTTCATTTCTTAAACTCATCCATTTTGCAGATGTTTGTTTGATTTACAATTGCGTGTTTGCTTTCCTCGACCGTATATAAAAATTGAAGTAATTACTTTGTTCGAATTGGTTGACGATAAATTGTTAAATGATGCGTTAGGCAATTTGTAAATTATTTTCTGCTTTATAATTTTTCAATGCTGAAGATGGCTGTATTCTGCGAAGCACGGGGTCGGTCAGAACTTTGATTAGGTCTTTGTGTTTTGCTTGACTTCTCATGGCGAGTGCTTAGTTTGCTTTCATCATTGTCTGAATCACTTTCGTTGTTATTGTTGTTGTTGATAGTATTAAAACACAGGAAATGAAAACTCTAGCTAGATAACTACGCAACTAAATTAGTTTGATATACCCCCGAAGCAAATGTATCTTTAGGGGAAAGAGAGCTTGGTGCTTGGACCAAATTGGAATAATTTTGGGTTGATATGGACTTAGAAAGCATATTAGTTAATTTTTGAGTTGGTATAATGTGTTCACTATTCAAACCCCTAATCTTGCACCAGATTAGCTCATACATCAACAATTGCAAACAACAGGCTCCCATTTTCAGCTTAACTTCTAGACTGGCCTGACTGGGAGAGTTTGTTGCTTATGAGAGGACTTTCAATTGTTTGGATTAGACCTGAATTAATATTTGTGAACTCAGAAATATTCGACGAGGATGGTTTGGAAAGAGCCCTAATCAATTGTGCTGTTGAAATCTTTTTCTAAGGCTTCTCATTGATGATCAAGTGGTGACCATTGCCCTTTGCTGAAAGCAATGGGGACTACGTACCGTGGAAGTTGAAATAGGATTGGAAATGCTTTTTCTTAAATAATTATCTACCGCTAGAAAAAGAAGTCATCTCCATTCCTTGAAAATAGCTCAGAATGCCAAGGATTTCAAGTGCGAAAGTTTAATCTGAAGTAGATGCAAGAGAGTTGATATTTGTGATGTAGGGGTGCAAGTTGAAATTTAAAAAATCAACCAAATGGTTTGAGCAACATATGTCAACTGGTTTGATTTCATTAAATTTGATACTGAAAATAAGTTGATTGTTTCCGTTCTGATCATATTGGTTGGTTTTGGTCGATTTAATATGGTTTTCATAATTGATTAGTTTGGTAGACATTGATTGGTTTTCATCTGGCGCTTAGTTTGATTAGTTTGGTAGACTTTCAATTTTTCTTTAACCAATAGGTTGATTTCAAGTAGAGTTGAACCAACCCATCATTAGTAGAACCCAAACGTGGAGACTGGTTCATGTGGACATCAGCAGTGTCCAAGTTTTGTAGTGTCCAACCTGTAGGCACGAGCAATAGTAAGACCCATCCTAGTGGTACTAACTTGGACTACAATACTAAAGGTTTGACAATAATCAACGTCCAGTGATTGGAATTTTTTTATCCTTTAACTTGACCTTTTAATGACCTACTGCCCCATCTGGACTTCTCTTGATTTTAAATACCCATTTTGGCTGCCAATGCTTTGGACGGGTACAAATTTCTCAGGAAGTTGTATATAACCATTGATATACCCTTCAAAGTGGAATCCATTTGCTTCCAGACCATTTATGTAACCAGTCTGGATCTCGAGGTAGCCATGGCTACTTTTTTACCTTCACTCGTACCCTTTCGTAGCTGAGCTTAAGCTCTGCTACCATCTTAAGGAAGCAGATATATTGATGGAAATATCTCTTTAATATCTTCGTGTAATCGTAATAGATTGGCGTGGGCTTTACATTATAGACTCAAAAATTGCTTGATGGTCTAACAAACTAGAGCTTACTGAAATATTACCAGCTAACTGTGCCCGCTTCAACTAAACTGAATCAGATGAACAGATATACCAAACAAAAGCATCCGAAATCACCTATAGTTCAGTGGTTTTCTTGGAGATGTCTCCTAACATATTTTCTTAGTACGTTGTTTTCTCCCCTTTTGTATAACTTGATGCAAATCAACCTTTTATAAGAAGATAACTATAATTTTAATAGTAATTTAGTTTCAGAGTGTATCTCTGCATGCCAAAAAAAGTATATTTGCTTTTAAGTGATATGTTGTCATTATAGAATCGTTGCATGGAAAACTAGAAGATAGAATTATCAAGTTATTTCCTATCGTTTAATCATAATTCAAGAGTTGGAGTCCTATCGTTTCTTGTTCTATTAGTTTGCACAATGTAATTAATTTTTTACATTTCAGAGCCGGAGTCAAATATTAAGCATAATTCAGGATGCAAGCCCCTTCAGAAGGAGAAAATGCTTTGGCTACGGTTGGTCCGCGTCCAATGGAGTGGTCCACCGTTCCATATAATGCGCCTCAAGGACCTGGGCCAAATGGGAAACAACGAACATCAAGTCTGGAATCACCGATCATGTTGTTGACAGGCCATCAAAGTGCCATATATACATTAAAGTTTAATCCAGCTGGAAATGTGATTGCATCTGGGTCTCATGACAAGGAGATTTTCCTGTGGAACGTACATGGAGATTGCAAGAACTTTATGGTTTTGAGAGGGCATAAGAATGCAGTTCTCGATCTTCATTGGACTACCGATGGATCTCAGATAGTTAGTGCCAGCCCCGATAAAACGCTGAGAGCATGGGATGTCGAGACTGGAAAACAAATTAAGAAGATGGCAGAGCATTCCTCCTTTGTCAATTCATGTTGTCCCACGAGAAGAGGGCCACCACTAATTGTCAGTGGATCCGACGATGGAACTGCGAAACTTTGGGATATGCGTCAAAGGGGTGCCATTCAAACTTTTCCAGATAAATATCAGATTACAGCAGTAAGTTTCTCGGATGCATCAGATAAGATCTTCACAGGTGGAATCGACAACGATGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACTCTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCCTATCTCCTCACTAATGGAATGGACTGCAAGCTCTGCATATGGGACATGCGCCCATATGCGCCCCAAAACCGATGTGTCAAGATATTTGAAGGGCACCAACATAACTTCGAAAAGAACCTACTGAAATGTAGTTGGTCTCCCGACGGTAGCAAGGTCACAGCAGGCAGTTCAGATCGGATGGTTTACGTATGGGATACAACCTCTCGACGAATCTTGTTTAAGCTTCCTGGCCATACCGGATCTGTCAATGAGTGTGTCTTCCATCCCAGTGAGCCTATTATTGGATCTTGCAGTAGTGATAAACAGATATATCTTGGGGAGATTTAATCTACATTTGAAATCATCGACCTGTAGTGTCGTGTATTATCAATTAGTCAATTGCTTCTGTAATTTTTCCATAAGAAAATGATGATCGTTTTTTGGACGTAAAATTAAAGCTGACATATCTGGTTACTGTTGTAAACATTTACGTGAGAGGAACTTGTATTTGGAACTTTGTTTCCATATCATGATTACTTTTTAGGCTTTCTTCGCAGCCAATATTTAAGGACCATCC

mRNA sequence

ATCGTGGTCGGTCAATCTGCACGGCAGGGCTCACAGCTGAGCAAACACCAGTCGAAGCGAATACCATTAGGGTTTTGGTTTTTGTGCTGATCTTCAAGAGCCGGAGTCAAATATTAAGCATAATTCAGGATGCAAGCCCCTTCAGAAGGAGAAAATGCTTTGGCTACGGTTGGTCCGCGTCCAATGGAGTGGTCCACCGTTCCATATAATGCGCCTCAAGGACCTGGGCCAAATGGGAAACAACGAACATCAAGTCTGGAATCACCGATCATGTTGTTGACAGGCCATCAAAGTGCCATATATACATTAAAGTTTAATCCAGCTGGAAATGTGATTGCATCTGGGTCTCATGACAAGGAGATTTTCCTGTGGAACGTACATGGAGATTGCAAGAACTTTATGGTTTTGAGAGGGCATAAGAATGCAGTTCTCGATCTTCATTGGACTACCGATGGATCTCAGATAGTTAGTGCCAGCCCCGATAAAACGCTGAGAGCATGGGATGTCGAGACTGGAAAACAAATTAAGAAGATGGCAGAGCATTCCTCCTTTGTCAATTCATGTTGTCCCACGAGAAGAGGGCCACCACTAATTGTCAGTGGATCCGACGATGGAACTGCGAAACTTTGGGATATGCGTCAAAGGGGTGCCATTCAAACTTTTCCAGATAAATATCAGATTACAGCAGTAAGTTTCTCGGATGCATCAGATAAGATCTTCACAGGTGGAATCGACAACGATGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACTCTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCCTATCTCCTCACTAATGGAATGGACTGCAAGCTCTGCATATGGGACATGCGCCCATATGCGCCCCAAAACCGATGTGTCAAGATATTTGAAGGGCACCAACATAACTTCGAAAAGAACCTACTGAAATGTAGTTGGTCTCCCGACGGTAGCAAGGTCACAGCAGGCAGTTCAGATCGGATGGTTTACGTATGGGATACAACCTCTCGACGAATCTTGTTTAAGCTTCCTGGCCATACCGGATCTGTCAATGAGTGTGTCTTCCATCCCAGTGAGCCTATTATTGGATCTTGCAGTAGTGATAAACAGATATATCTTGGGGAGATTTAATCTACATTTGAAATCATCGACCTGTAGTGTCGTGTATTATCAATTAGTCAATTGCTTCTGTAATTTTTCCATAAGAAAATGATGATCGTTTTTTGGACGTAAAATTAAAGCTGACATATCTGGTTACTGTTGTAAACATTTACGTGAGAGGAACTTGTATTTGGAACTTTGTTTCCATATCATGATTACTTTTTAGGCTTTCTTCGCAGCCAATATTTAAGGACCATCC

Coding sequence (CDS)

ATGCAAGCCCCTTCAGAAGGAGAAAATGCTTTGGCTACGGTTGGTCCGCGTCCAATGGAGTGGTCCACCGTTCCATATAATGCGCCTCAAGGACCTGGGCCAAATGGGAAACAACGAACATCAAGTCTGGAATCACCGATCATGTTGTTGACAGGCCATCAAAGTGCCATATATACATTAAAGTTTAATCCAGCTGGAAATGTGATTGCATCTGGGTCTCATGACAAGGAGATTTTCCTGTGGAACGTACATGGAGATTGCAAGAACTTTATGGTTTTGAGAGGGCATAAGAATGCAGTTCTCGATCTTCATTGGACTACCGATGGATCTCAGATAGTTAGTGCCAGCCCCGATAAAACGCTGAGAGCATGGGATGTCGAGACTGGAAAACAAATTAAGAAGATGGCAGAGCATTCCTCCTTTGTCAATTCATGTTGTCCCACGAGAAGAGGGCCACCACTAATTGTCAGTGGATCCGACGATGGAACTGCGAAACTTTGGGATATGCGTCAAAGGGGTGCCATTCAAACTTTTCCAGATAAATATCAGATTACAGCAGTAAGTTTCTCGGATGCATCAGATAAGATCTTCACAGGTGGAATCGACAACGATGTTAAGGTCTGGGATTTGCGCAAAGGTGAAGTGATGATGACTCTTCAAGGTCATCAAGATATGATAACTGGTATGCAGTTGAGTCCTGATGGTTCCTATCTCCTCACTAATGGAATGGACTGCAAGCTCTGCATATGGGACATGCGCCCATATGCGCCCCAAAACCGATGTGTCAAGATATTTGAAGGGCACCAACATAACTTCGAAAAGAACCTACTGAAATGTAGTTGGTCTCCCGACGGTAGCAAGGTCACAGCAGGCAGTTCAGATCGGATGGTTTACGTATGGGATACAACCTCTCGACGAATCTTGTTTAAGCTTCCTGGCCATACCGGATCTGTCAATGAGTGTGTCTTCCATCCCAGTGAGCCTATTATTGGATCTTGCAGTAGTGATAAACAGATATATCTTGGGGAGATTTAA

Protein sequence

MQAPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTLKFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSSDKQIYLGEI

Homology

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BLAST of Lcy13g000340 vs. ExPASy Swiss-Prot
Match: Q96DI7 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 4.9e-124
Identity = 190/309 (61.49%), Postives = 249/309 (80.58%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRG 95
           G  R SSL++PIMLL+GH+  +Y  KF+P G+ +AS   D+ I LWNV+GDC N+  L+G
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 107

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 108 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSS 335
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRRIL+KLPGH GS+NE  FHP EPII S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 348 DKRLYMGEI 356

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BLAST of Lcy13g000340 vs. ExPASy Swiss-Prot
Match: Q6PE01 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Snrnp40 PE=1 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 8.3e-124
Identity = 188/309 (60.84%), Postives = 249/309 (80.58%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRG 95
           G  R SSL++PIMLL+GH+  +Y  KF+P G+ +AS   D+ I LWNV+GDC N+  L+G
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 108

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 109 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ A+QTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 228

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 288

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSS 335
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRR+L+KLPGH GS+NE  FHP EPII S SS
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASS 348

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 349 DKRLYMGEI 357

[Close]

BLAST of Lcy13g000340 vs. ExPASy Swiss-Prot
Match: Q2HJH6 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 1.1e-123
Identity = 189/309 (61.17%), Postives = 249/309 (80.58%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRG 95
           G  R SSL++PIMLL+GH+  +Y  KF+P G+ +AS   D+ I LWNV+GDC N+  L+G
Sbjct: 49  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKG 108

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           H  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 109 HSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 168

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 169 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 228

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCV+IF+G+ HNFEKN
Sbjct: 229 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVRIFQGNVHNFEKN 288

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSS 335
           LL+CSWSPDGSK+ AGS+DR VYVWDTTSRRIL+KLPGH GS+NE  FHP EPII S SS
Sbjct: 289 LLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASS 348

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 349 DKRLYMGEI 357

[Close]

BLAST of Lcy13g000340 vs. ExPASy Swiss-Prot
Match: Q5RF51 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 4.6e-122
Identity = 188/309 (60.84%), Postives = 248/309 (80.26%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRG 95
           G  R SSL++PIMLL+GH+  +Y  KF+P G+ +AS   D+ I LWNV+GDC N+  L+G
Sbjct: 48  GPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCGNYATLKG 107

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           +  AV++LH+ TDGS + SAS DKT+  WD ETG+++K++  H+SFVNSC P RRGP L+
Sbjct: 108 YSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLV 167

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEV 215
            +GSDDGT KLWD+R++ AIQTF + YQ+ AV+F+D SD+I +GGIDND+KVWDLR+ ++
Sbjct: 168 CTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKL 227

Query: 216 MMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKN 275
             T++GH D +TG+ LS +GSYLL+N MD  + +WD+RP+AP+ RCVKIF+G+ HNFEKN
Sbjct: 228 TYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKN 287

Query: 276 LLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSS 335
           LL+CSWSPDGSK+ AGS+DR V VWDTTSRRIL+KLPGH GS+NE  FHP EPII S SS
Sbjct: 288 LLRCSWSPDGSKIAAGSADRSVCVWDTTSRRILYKLPGHAGSINEVAFHPDEPIIISASS 347

Query: 336 DKQIYLGEI 345
           DK++Y+GEI
Sbjct: 348 DKRLYMGEI 356

[Close]

BLAST of Lcy13g000340 vs. ExPASy Swiss-Prot
Match: Q55AR8 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX=44689 GN=snrnp40 PE=3 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 1.6e-111
Identity = 178/310 (57.42%), Postives = 230/310 (74.19%), Query Frame = 0


Query: 36  GKQRTSSLESPIMLLTGHQSAIYTLKFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRG 95
           G +RTS LE PIM L GH+  IY+ KFN  G  +ASG  DKEIFLWNV+G+C N+ VL+G
Sbjct: 44  GTERTSKLEHPIMQLIGHKGEIYSCKFNSYGTALASGGSDKEIFLWNVYGECINYSVLKG 103

Query: 96  HKNAVLDLHWTTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLI 155
           HK  +L+LHW+TD ++I +A  DK++  WD   G+ IK++ EHS  VNSCCP RRGPPL+
Sbjct: 104 HKGTILELHWSTDSNEIYTACTDKSIGVWDSNKGELIKRIREHSGVVNSCCPARRGPPLV 163

Query: 156 VSGSDDGTAKLWDMRQRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGE- 215
            SGSDD +A+++D R +G+   F  KY +T+V FSDASD++ TGGIDN ++VWD+R  E 
Sbjct: 164 ASGSDDRSARIFDTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQED 223

Query: 216 VMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEK 275
            + TL  HQD IT   +S DG+YLL+N MD    IWD+RPYAP NR +K F G Q+NFEK
Sbjct: 224 PLYTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEK 283

Query: 276 NLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCS 335
           NL+K SWS DG ++  GSSDR VY+WDT ++++ + LPGH+G+VNE  FHP+EPII SCS
Sbjct: 284 NLIKSSWSIDGRRIGCGSSDRQVYIWDTNTKQLQYCLPGHSGTVNEVTFHPNEPIIASCS 343

Query: 336 SDKQIYLGEI 345
           SDK IYLGEI
Sbjct: 344 SDKTIYLGEI 353

[Close]

BLAST of Lcy13g000340 vs. ExPASy TrEMBL
Match: A0A6J1G1Q0 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111449859 PE=4 SV=1)

HSP 1 Score: 726.1 bits (1873), Expect = 6.9e-206
Identity = 338/344 (98.26%), Postives = 342/344 (99.42%), Query Frame = 0


Query: 1   MQAPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQ PS GENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNPAG+VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSSDKQIYLGEI 345
           DTTSRRIL+KLPGHTGSVNECVFHPSEPI+GSCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of Lcy13g000340 vs. ExPASy TrEMBL
Match: A0A6J1HV60 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111466479 PE=4 SV=1)

HSP 1 Score: 724.2 bits (1868), Expect = 2.6e-205
Identity = 337/344 (97.97%), Postives = 341/344 (99.13%), Query Frame = 0


Query: 1   MQAPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQ PS GENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLL GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNPAG+VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSSDKQIYLGEI 345
           DTTSRRIL+KLPGHTGSVNECVFHPSEPI+GSCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

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BLAST of Lcy13g000340 vs. ExPASy TrEMBL
Match: A0A5A7SYI1 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002400 PE=4 SV=1)

HSP 1 Score: 718.4 bits (1853), Expect = 1.4e-203
Identity = 334/344 (97.09%), Postives = 338/344 (98.26%), Query Frame = 0


Query: 1   MQAPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQ PSEGENALATVGPRPMEWSTVPYN PQGPGPNGKQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP GNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSSDKQIYLGEI 345
           DTTSRRIL+KLPGHTGSVNECVFHPSEPI+ SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

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BLAST of Lcy13g000340 vs. ExPASy TrEMBL
Match: A0A1S3BDK5 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC103488871 PE=4 SV=1)

HSP 1 Score: 718.4 bits (1853), Expect = 1.4e-203
Identity = 334/344 (97.09%), Postives = 338/344 (98.26%), Query Frame = 0


Query: 1   MQAPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQ PSEGENALATVGPRPMEWSTVPYN PQGPGPNGKQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP GNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSSDKQIYLGEI 345
           DTTSRRIL+KLPGHTGSVNECVFHPSEPI+ SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of Lcy13g000340 vs. ExPASy TrEMBL
Match: A0A0A0KTB1 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G588760 PE=4 SV=1)

HSP 1 Score: 713.0 bits (1839), Expect = 6.0e-202
Identity = 331/344 (96.22%), Postives = 336/344 (97.67%), Query Frame = 0


Query: 1   MQAPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQ PSEGENALATVGPRPMEWSTVPYN PQGPGPN KQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP GNV+ASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSSDKQIYLGEI 345
           DTTSRRIL+KLPGHTGSVNECVFHPSEPI+ SC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344

[Close]

BLAST of Lcy13g000340 vs. NCBI nr
Match: XP_022945717.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata] >KAG6573599.1 U5 small nuclear ribonucleoprotein 40 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012682.1 U5 small nuclear ribonucleoprotein 40 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 726.1 bits (1873), Expect = 1.4e-205
Identity = 338/344 (98.26%), Postives = 342/344 (99.42%), Query Frame = 0


Query: 1   MQAPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQ PS GENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNPAG+VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSSDKQIYLGEI 345
           DTTSRRIL+KLPGHTGSVNECVFHPSEPI+GSCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of Lcy13g000340 vs. NCBI nr
Match: XP_023542336.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 724.5 bits (1869), Expect = 4.1e-205
Identity = 337/344 (97.97%), Postives = 342/344 (99.42%), Query Frame = 0


Query: 1   MQAPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQ PS GENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60

Query: 61  KFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNPAG+VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVM+TLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMITLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSSDKQIYLGEI 345
           DTTSRRIL+KLPGHTGSVNECVFHPSEPI+GSCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of Lcy13g000340 vs. NCBI nr
Match: XP_022966914.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima])

HSP 1 Score: 724.2 bits (1868), Expect = 5.4e-205
Identity = 337/344 (97.97%), Postives = 341/344 (99.13%), Query Frame = 0


Query: 1   MQAPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQ PS GENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLL GHQSAIYTL
Sbjct: 1   MQVPSGGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLAGHQSAIYTL 60

Query: 61  KFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNPAG+VIASGSHDKEIFLWNVHGDCKN+MVLRGHKNAVLDLHWTTDGSQIVSASPDKT
Sbjct: 61  KFNPAGSVIASGSHDKEIFLWNVHGDCKNYMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300

Query: 301 DTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSSDKQIYLGEI 345
           DTTSRRIL+KLPGHTGSVNECVFHPSEPI+GSCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVGSCSSDKQIYLGEI 344

[Close]

BLAST of Lcy13g000340 vs. NCBI nr
Match: XP_008446018.1 (PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo] >KAA0034179.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo var. makuwa] >TYK15740.1 U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 718.4 bits (1853), Expect = 3.0e-203
Identity = 334/344 (97.09%), Postives = 338/344 (98.26%), Query Frame = 0


Query: 1   MQAPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQ PSEGENALATVGPRPMEWSTVPYN PQGPGPNGKQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNGKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP GNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSSDKQIYLGEI 345
           DTTSRRIL+KLPGHTGSVNECVFHPSEPI+ SCSSDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCSSDKQIYLGEI 344

[Close]

BLAST of Lcy13g000340 vs. NCBI nr
Match: XP_004135336.1 (U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus] >KGN51657.1 hypothetical protein Csa_008253 [Cucumis sativus])

HSP 1 Score: 713.0 bits (1839), Expect = 1.2e-201
Identity = 331/344 (96.22%), Postives = 336/344 (97.67%), Query Frame = 0


Query: 1   MQAPSEGENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTL 60
           MQ PSEGENALATVGPRPMEWSTVPYN PQGPGPN KQRTSSLESPIMLL+GHQSAIYTL
Sbjct: 1   MQVPSEGENALATVGPRPMEWSTVPYNPPQGPGPNVKQRTSSLESPIMLLSGHQSAIYTL 60

Query: 61  KFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGSQIVSASPDKT 120
           KFNP GNV+ASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWT DGSQIVSASPDKT
Sbjct: 61  KFNPDGNVVASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTVDGSQIVSASPDKT 120

Query: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180
           LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD
Sbjct: 121 LRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPD 180

Query: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240
           KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT
Sbjct: 181 KYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLT 240

Query: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVW 300
           NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWS DGSKVTAGSSDRMVY+W
Sbjct: 241 NGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSADGSKVTAGSSDRMVYIW 300

Query: 301 DTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSSDKQIYLGEI 345
           DTTSRRIL+KLPGHTGSVNECVFHPSEPI+ SC SDKQIYLGEI
Sbjct: 301 DTTSRRILYKLPGHTGSVNECVFHPSEPIVASCGSDKQIYLGEI 344

[Close]

BLAST of Lcy13g000340 vs. TAIR 10
Match: AT2G43770.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 660.2 bits (1702), Expect = 9.0e-190
Identity = 298/337 (88.43%), Postives = 321/337 (95.25%), Query Frame = 0


Query: 8   ENALATVGPRPMEWSTVPYNAPQGPGPNGKQRTSSLESPIMLLTGHQSAIYTLKFNPAGN 67
           EN  A  GPRPMEWSTVP++A QGPGPNGK RTSSLE+PIMLL+GH SA+YT+KFNPAG 
Sbjct: 7   ENETALSGPRPMEWSTVPHSASQGPGPNGKNRTSSLEAPIMLLSGHPSAVYTMKFNPAGT 66

Query: 68  VIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDGSQIVSASPDKTLRAWDVE 127
           +IASGSHD+EIFLW VHGDCKNFMVL+GHKNA+LDLHWT+DGSQIVSASPDKT+RAWDVE
Sbjct: 67  LIASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWDVE 126

Query: 128 TGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKYQITAV 187
           TGKQIKKMAEHSSFVNSCCPTRRGPPLI+SGSDDGTAKLWDMRQRGAIQTFPDKYQITAV
Sbjct: 127 TGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDKYQITAV 186

Query: 188 SFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQDMITGMQLSPDGSYLLTNGMDCKL 247
           SFSDA+DKIFTGG+DNDVKVWDLRKGE  MTL+GHQD ITGM LSPDGSYLLTNGMD KL
Sbjct: 187 SFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKL 246

Query: 248 CIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDTTSRRI 307
           C+WDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDG+KVTAGSSDRMV++WDTTSRR 
Sbjct: 247 CVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWDTTSRRT 306

Query: 308 LFKLPGHTGSVNECVFHPSEPIIGSCSSDKQIYLGEI 345
           ++KLPGHTGSVNECVFHP+EPIIGSCSSDK IYLGEI
Sbjct: 307 IYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYLGEI 343

[Close]

BLAST of Lcy13g000340 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 162.9 bits (411), Expect = 4.5e-40
Identity = 91/296 (30.74%), Postives = 154/296 (52.03%), Query Frame = 0


Query: 50  LTGHQSAIYTLKFNPAGNVIASGSHDKEIFLWNVH----GDCKNFMVLRGHKNAVLDLHW 109
           LT H  A+ ++KF+  G ++AS S DK I  + ++       +      GH+N + D+ +
Sbjct: 20  LTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAF 79

Query: 110 TTDGSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAK 169
           ++D   IVSAS DKTL+ WDVETG  IK +  H+++   C        +IVSGS D T +
Sbjct: 80  SSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYA-FCVNFNPQSNMIVSGSFDETVR 139

Query: 170 LWDMRQRGAIQTFP-DKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTL-QGHQ 229
           +WD+     ++  P     +TAV F+     I +   D   ++WD   G  + TL     
Sbjct: 140 IWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDEN 199

Query: 230 DMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSP 289
             ++ ++ SP+G ++L   +D  L +W++       + +K + GH  N +  +       
Sbjct: 200 PPVSFVRFSPNGKFILVGTLDNTLRLWNI----SSAKFLKTYTGHV-NAQYCISSAFSVT 259

Query: 290 DGSKVTAGSSDRMVYVWDTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSSDKQI 340
           +G ++ +GS D  V++W+  S+++L KL GHT +V     HP+E +I S S DK +
Sbjct: 260 NGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTV 309

[Close]

BLAST of Lcy13g000340 vs. TAIR 10
Match: AT5G64730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 126.3 bits (316), Expect = 4.7e-29
Identity = 81/296 (27.36%), Postives = 129/296 (43.58%), Query Frame = 0


Query: 49  LLTGHQSAIYTLKFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTD 108
           +L GH+ A+   +FN  GN   +   D+ I LWN H         + H   V D+H T+D
Sbjct: 13  ILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWNPHRGIL-IKTYKSHGREVRDVHVTSD 72

Query: 109 GSQIVSASPDKTLRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIVSGSDDGTAKLWD 168
            ++  S   D+ +  WDV TG+ I+K   H   VN+         ++VS   D + ++WD
Sbjct: 73  NAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVNA-VKFNDSSSVVVSAGFDRSLRVWD 132

Query: 169 MRQRGA-----IQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQ 228
            R         I TF D    T +S      +I  G +D  V+ +D+R G  M    G  
Sbjct: 133 CRSHSVEPVQIIDTFLD----TVMSVVLTKTEIIGGSVDGTVRTFDMRIGREMSDNLGQP 192

Query: 229 DMITGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSP 288
             +  + +S DG+ +L   +D  L + D          +++++GH     K    C  + 
Sbjct: 193 --VNCISISNDGNCVLAGCLDSTLRLLD----RTTGELLQVYKGHISKSFKT--DCCLTN 252

Query: 289 DGSKVTAGSSDRMVYVWDTTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSSDKQI 340
             + V  GS D +V+ WD    ++L K   H   V    +HP E  + + S D  I
Sbjct: 253 SDAHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYHPKEDCMLTSSVDGTI 294

[Close]

BLAST of Lcy13g000340 vs. TAIR 10
Match: AT5G52820.1 (WD-40 repeat family protein / notchless protein, putative )

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-27
Identity = 86/301 (28.57%), Postives = 144/301 (47.84%), Query Frame = 0


Query: 50  LTGHQSAIYTLKFNPAGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDG 109
           + GH  A+  + F+P G  +ASGS D  + LW+++ +   F   +GHKN VL + W+ DG
Sbjct: 105 IAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLF-TCKGHKNWVLTVAWSPDG 164

Query: 110 SQIVSASPDKTLRAWDVETGK-QIKKMAEHSSFVN--SCCPTRRGPPL--IVSGSDDGTA 169
             +VS S    +  W+ + G+ +   +  H  ++   S  P     P    V+ S DG A
Sbjct: 165 KHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDA 224

Query: 170 KLWDMR-QRGAIQTFPDKYQITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTLQGHQ 229
           ++WD+  ++  I        +T V +      I+TG  D  +K+W+  +G+++  L+GH 
Sbjct: 225 RIWDITLKKSIICLSGHTLAVTCVKWG-GDGIIYTGSQDCTIKMWETTQGKLIRELKGHG 284

Query: 230 DMITGMQLSPDGSYLLTNGMDCKLCIWDM--RPYAPQNRCVKIFEGHQHNFEKNLLKCSW 289
             I  + LS +  Y+L  G       +D   R Y P     K  E  ++N  K       
Sbjct: 285 HWINSLALSTE--YVLRTG------AFDHTGRQYPPNEEKQKALE--RYNKTK-----GD 344

Query: 290 SPDGSKVTAGSSDRMVYVWD-TTSRRILFKLPGHTGSVNECVFHPSEPIIGSCSSDKQIY 342
           SP+  ++ +GS D  +++W+ + S++   +L GH   VN   F P    I S S DK + 
Sbjct: 345 SPE--RLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVR 386

[Close]

BLAST of Lcy13g000340 vs. TAIR 10
Match: AT1G10580.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 115.5 bits (288), Expect = 8.2e-26
Identity = 70/291 (24.05%), Postives = 132/291 (45.36%), Query Frame = 0


Query: 51  TGHQSAIYTLKFNP-AGNVIASGSHDKEIFLWNVHGDCKNFMVLRGHKNAVLDLHWTTDG 110
           +GH   +  ++F P  G+++ S   D ++ +W+V+   K      GH  AV D+ ++ DG
Sbjct: 279 SGHTKGVSAIRFFPKQGHLLLSAGMDCKVKIWDVYNSGKCMRTYMGHAKAVRDICFSNDG 338

Query: 111 SQIVSASPDKTLRAWDVETGKQIKKMAEHS-SFVNSCCPTRRGPPLIVSGSDDGTAKLWD 170
           S+ ++A  DK ++ WD ETG+ I   +     +V    P      ++++G  D     WD
Sbjct: 339 SKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 398

Query: 171 MRQRGAIQTFPDKY-QITAVSFSDASDKIFTGGIDNDVKVWDLRKGEVMMTL-QGHQDMI 230
           +      Q +      +  ++F D + +  T   D  ++VW+     V+  + + H   +
Sbjct: 399 INTGEVTQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 458

Query: 231 TGMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGS 290
             + + P+G++L    +D ++ I+  R     N+  K F G  H       + ++SPDG 
Sbjct: 459 PSISVHPNGNWLAAQSLDNQILIYSTRERFQLNK-KKRFAG--HIVAGYACQVNFSPDGR 518

Query: 291 KVTAGSSDRMVYVWDTTSRRILFKLPGHTGSVNECVFHPSEPI-IGSCSSD 337
            V +G  +   + WD  S ++   L  H G      +HP E   + +C  D
Sbjct: 519 FVMSGDGEGKCWFWDWKSCKVFRTLKCHNGVCIGAEWHPLEQSKVATCGWD 566

The following BLAST results are available for this feature:

BLAST of Lcy13g000340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96DI7	4.9e-124	61.49	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens OX=9606 GN=SNR...	[more]
Q6PE01	8.3e-124	60.84	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus OX=10090 GN=Sn...	[more]
Q2HJH6	1.1e-123	61.17	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus OX=9913 GN=SNRNP...	[more]
Q5RF51	4.6e-122	60.84	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii OX=9601 GN=SNR...	[more]
Q55AR8	1.6e-111	57.42	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX...	[more]

BLAST of Lcy13g000340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1Q0	6.9e-206	98.26	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1HV60	2.6e-205	97.97	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucurbita maxima OX=3661 GN...	[more]
A0A5A7SYI1	1.4e-203	97.09	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BDK5	1.4e-203	97.09	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KTB1	6.0e-202	96.22	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G...	[more]

BLAST of Lcy13g000340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945717.1	1.4e-205	98.26	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita moschata] >KAG65735...	[more]
XP_023542336.1	4.1e-205	97.97	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita pepo subsp. pepo]	[more]
XP_022966914.1	5.4e-205	97.97	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucurbita maxima]	[more]
XP_008446018.1	3.0e-203	97.09	PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis melo] >KAA...	[more]
XP_004135336.1	1.2e-201	96.22	U5 small nuclear ribonucleoprotein 40 kDa protein [Cucumis sativus] >KGN51657.1 ...	[more]

BLAST of Lcy13g000340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43770.1	9.0e-190	88.43	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G49660.1	4.5e-40	30.74	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G64730.1	4.7e-29	27.36	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G52820.1	1.1e-27	28.57	WD-40 repeat family protein / notchless protein, putative	[more]
AT1G10580.1	8.2e-26	24.05	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 155..169 score: 41.82 coord: 112..126 score: 37.9 coord: 69..83 score: 35.64
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 43..82 e-value: 2.8E-8 score: 43.5 coord: 258..301 e-value: 1.1E-6 score: 38.2 coord: 304..343 e-value: 0.0014 score: 27.9 coord: 212..251 e-value: 1.6E-8 score: 44.3 coord: 128..168 e-value: 1.6E-7 score: 41.0 coord: 171..209 e-value: 3.2E-4 score: 30.0 coord: 86..125 e-value: 4.4E-8 score: 42.9
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 46..82 e-value: 2.7E-6 score: 28.0 coord: 308..341 e-value: 0.097 score: 13.6 coord: 88..125 e-value: 2.4E-4 score: 21.8 coord: 130..168 e-value: 4.1E-4 score: 21.1 coord: 260..301 e-value: 2.4E-6 score: 28.1 coord: 184..209 e-value: 0.0089 score: 16.9 coord: 214..251 e-value: 7.2E-6 score: 26.6
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 50..83 score: 15.35409
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 311..344 score: 9.004632
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 135..177 score: 10.541869
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 280..310 score: 10.742378
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 93..134 score: 16.523727
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 219..253 score: 13.516088
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 184..218 score: 12.580379
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 42..344 e-value: 7.8E-122 score: 407.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR44006:SF1	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN	coord: 30..344
None	No IPR available	PANTHER	PTHR44006	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN	coord: 30..344
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 177..214 score: 9.151057
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 50..83 score: 12.657402
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 219..253 score: 11.207411
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 311..344 score: 8.966513
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 93..130 score: 12.578312
None	No IPR available	CDD	cd00200	WD40	coord: 50..341 e-value: 4.91011E-74 score: 228.759
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 112..126
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 288..302
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 155..169
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 196..210
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 69..83
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 47..341

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g000340.1	Lcy13g000340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0071013	catalytic step 2 spliceosome
molecular_function	GO:0005515	protein binding