Lcy13g000160 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy13g000160
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribosome biogenesis protein BOP1 homolog
Location	Chr13: 235594 .. 238525 (-)
RNA-Seq Expression	Lcy13g000160
Synteny	Lcy13g000160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACATATACCCACCCAAGAAGAAATAAATTCTCATCAGTTAATGTATGAAGATCGGCCAAAGTTTATTCCTAGAAGGTGATAAAGCTTTATATATAGCCAATTGTTAATAGTATTGTTCCTCCTATACTCATCATATAACCATCTTCTTTTTTTGTTGTGCATCCATTGATTTATATTATATTTGTTCTGGACAGGTTTACATCCATGAGAAGTGTACCTGCTTACTACGATGCTCTTAAGGATGTATTTGAACGTTGCTTGGATCTGTACTTGTGTGCTCGTGTTCAGAGAAAACGTGTAAGCAAAACAAGATCGAGAAGATTTGCTATTTTCTTTTAAAAAAATTGAACCCTATTGGTTCCTGGGTCTGACACCAGATTGGGCTCTTTTGATGTTATTCTACTACTCAATAATTATACAAATACTTGATAATTTTTTTTCCATAACTTTCATGTTTCAGATTAATATTGATCCTGAATCTTTGAAGCCTAAGCTGCCAAGCCGGAATGATCTCACACCTTTTCCTACTACACGCTATCTTGAATATAGAGGTCATAAGGATGCTGTCGTGTCCATTTCAATTTTGAACTGAAGCAAACGGCCAATGGATTGCTTCAGGTAAGAATAACAAATGAAGAGGTTTGATTATTTTCATTCATGGGACCTAAAATTATTATTTGGATTTGGGTCATTTTTTTTGCTATTGTGTGTCAAGGTTCATTGGATGGAACCGTTCGGATATGGGAAGTTGAAACAGGTAGATGTCTCAAAGTATGAGAGGTTGGCGAAGCTGTAAAGTATGTAGCTTGGAATCCTTTGCCCGAGCTTCCAATATTGGCTGCTGCTGTGTAAGACTAATGATACCATCATTTTGAAGATGTTTAAACTATGGTATCACACCCTTTTTTTTTTTGTTAATTTACTGGTAAACATTCTGTAGGGGTGCTGATGTACTGCTTTTAAACACTGGTTTCGGGAATGGAGAGGTTCGAGCAAAAATTAAGGAATTTGTCCATGTTGAGACACTTCCTGCAACAGATAATTCTGGTAGTACGCAATAGTGATTTGACTCAGTGCTATAGTCAGTTTGAGTGTGTCCTAATTTGTGATGATTCTATGCATAGATTCTCCAATTGCAATAGTCAGTTTGAGGCTGTCCTAATTTGTGATGATTCTATTCATGGATAAGACACCAATTGCAATAGTCAGTTTGAGTGTTGACCTAATTTGTGATGATTCTATGCATAGATAATACACCAATTGCAACCTGGCTTCAAGACGATAAGATTGAGAGAATTAGATTGAGGCATTTTAAGGTGCTTTCTATTCACCTTCTCTCTCCAATAATACGATTCTTGCATTTTTCCTTGTAGCTAGAATCAAATGGCTTTTTTTAAATAAGGAATGTAACTGAAGTTTCTTGTGTTTCAATGTGGTTTGCAGACTGTATCTTCAGTTGAATGGCATCGTAAAGGAGATTATCTTTCAACAGTTATGGCAGCTGATATCCTATTTAATTTTGTTTTGAAGCTTTGTCATCTTTATTTCACTTGGATATAAATGACTTTGAGTTACATGTGTCGACACATCTATGGTAAAGGCTTGGTATTCATAAAACTTCTCTATGTATCTGCAAATCGTACTCTGTTATTGTCTAACCCTGTAGTTTTGGTGAAAAACATCTGTTTGATGACAGAAGTCAACTTGACGCCATTTTTCATGCCTTTTCTTTCCCCAAGATGTTTTTTCAAGTCCATGATTCTAATTTTTTAGAAGATAAATTTCCTAAGTTTAGGTTGAGTGTTGCTTATGATGACTCTTGCTCCTTGGCATAAATAATACGTTGCAAGATTAGGTCTTGTGGTAATGTACCCGCCTAAAGGAAGGAAGTCAATTGGGGCTACGGGGAGTTATAACCATCTCGATTCCTTTGTTGGTTTAGGGTCTATCTGGTCTTCTGGACATGTTTTGCATAGTTCTCGTTGAGGATGTTTTTCTCCTTTTTTTTTGTTGCTTCATTTTTACTGGCTTCATTTTAGTTTCATTCTTGTTAATGGAAGTGTTGTTTCAAATCAAATAAATATTGAGCCATTGACAAGTGTCAAGTAGGACCTTTGTGTCTTGTATTTTCCTGTTTGTAGGGTGAAGTGGTAACAATTATTTATTTGTTTATTTAAGAGAGCAACAGTTTTTCTTGACTTGTATTACGTGAATCAAGAGCAGTTCTCTTATTCACCAGCTCTCTAGAAAGCTAACACAAAAAATTCCATTCAAGTTGCATGGGCTTCCTGTTTCATCCCTTTTTCATCCCTCACGATCTATCTTCTTTGTATGTTCGTGTTTATGATCTATTGAAGCAAAAGCTCATAAAAAAGCTGGAAACTGGACTACGTGAAGTTTCTTCTATTGCTGTGCATCCAGCTGGTACATCTGCTTCTAAGCCTCATTGCTGACTACATTGTGTAGTGCTGCTTCCGTACAAAAATTTAGTTCTTGGAAAGTTTATACAGTAATTTTTTTCTGTAAGTGATAACGTTATTTTGCCCACAGCCCTGCCTTCTTTGCTGGATAGAATGGAATAACTTGGGAAACATTATGACTTGTGATTATTTGAATGCTAAAAAAATGTTCACATGGAGGGATTAGATGGATGAACCCTTTCTTTCTCCTGATATCTGTTGAAGTAAAAAATGTCAACGTTAGTTTTGGAATATTTGTGCAGCTGCCATCCAAAAGATATCACAAATGTTGCCTTCCATCGATCATATCCGTTGTTTGCATCTTGCTCTGATGATTGCACTGCATATGTTTTTCATGGGATGGTTTACGCGGATCTTACACAGAATCCCCTTATTGTACAGTTAGAAATACTAAGAGGACACGAAAACGCTAATGGAAGAGGTGAGGAAGTTGATTGCATTAATTAA

mRNA sequence

ATGGAACATATACCCACCCAAGAAGAAATAAATTCTCATCAGTTAATGTATGAAGATCGGCCAAAGTTTATTCCTAGAAGGTTTACATCCATGAGAAGTGTACCTGCTTACTACGATGCTCTTAAGGATGTATTTGAACGTTGCTTGGATCTGTACTTGTGTGCTCGTGTTCAGAGAAAACGTATTAATATTGATCCTGAATCTTTGAAGCCTAAGCTGCCAAGCCGGAATGATCTCACACCTTTTCCTACTACACGCTATCTTGAATATAGAGGTCATAAGGATGCTGTCGTTCATTGGATGGAACCGTTCGGATATGGGAAGTTGAAACAGGTAGATGTCTCAAAGTATGAGAGGGGTGCTGATGTACTGCTTTTAAACACTGGTTTCGGGAATGGAGAGGTTCGAGCAAAAATTAAGGAATTTGTCCATGTTGAGACACTTCCTGCAACAGATAATTCTGGTAGTACGCAATACTGCCATCCAAAAGATATCACAAATGTTGCCTTCCATCGATCATATCCGTTGTTTGCATCTTGCTCTGATGATTGCACTGCATATGTTTTTCATGGGATGGTTTACGCGGATCTTACACAGAATCCCCTTATTGTACAGTTAGAAATACTAAGAGGACACGAAAACGCTAATGGAAGAGGTGAGGAAGTTGATTGCATTAATTAA

Coding sequence (CDS)

ATGGAACATATACCCACCCAAGAAGAAATAAATTCTCATCAGTTAATGTATGAAGATCGGCCAAAGTTTATTCCTAGAAGGTTTACATCCATGAGAAGTGTACCTGCTTACTACGATGCTCTTAAGGATGTATTTGAACGTTGCTTGGATCTGTACTTGTGTGCTCGTGTTCAGAGAAAACGTATTAATATTGATCCTGAATCTTTGAAGCCTAAGCTGCCAAGCCGGAATGATCTCACACCTTTTCCTACTACACGCTATCTTGAATATAGAGGTCATAAGGATGCTGTCGTTCATTGGATGGAACCGTTCGGATATGGGAAGTTGAAACAGGTAGATGTCTCAAAGTATGAGAGGGGTGCTGATGTACTGCTTTTAAACACTGGTTTCGGGAATGGAGAGGTTCGAGCAAAAATTAAGGAATTTGTCCATGTTGAGACACTTCCTGCAACAGATAATTCTGGTAGTACGCAATACTGCCATCCAAAAGATATCACAAATGTTGCCTTCCATCGATCATATCCGTTGTTTGCATCTTGCTCTGATGATTGCACTGCATATGTTTTTCATGGGATGGTTTACGCGGATCTTACACAGAATCCCCTTATTGTACAGTTAGAAATACTAAGAGGACACGAAAACGCTAATGGAAGAGGTGAGGAAGTTGATTGCATTAATTAA

Protein sequence

MEHIPTQEEINSHQLMYEDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRKRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAVVHWMEPFGYGKLKQVDVSKYERGADVLLLNTGFGNGEVRAKIKEFVHVETLPATDNSGSTQYCHPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYADLTQNPLIVQLEILRGHENANGRGEEVDCIN

Homology

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BLAST of Lcy13g000160 vs. ExPASy Swiss-Prot
Match: F4IH25 (Ribosome biogenesis protein BOP1 homolog OS=Arabidopsis thaliana OX=3702 GN=BOP1 PE=1 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.7e-48
Identity = 138/405 (34.07%), Postives = 166/405 (40.99%), Query Frame = 0


Query: 1   MEHIPTQEEINSHQLMY-EDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 60
           +E+IPT+EE  S++LM+ EDRPKFIP RFTS+RS+PAY +ALK+ FERCLDLYLC RV++
Sbjct: 329 LEYIPTEEEKASYELMFEEDRPKFIPTRFTSLRSIPAYENALKESFERCLDLYLCPRVRK 388

Query: 61  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAVV--------HWMEP-------- 120
           KRINIDPESLKPKLPSR DL P+P + YLEY+GH  AV          W+          
Sbjct: 389 KRINIDPESLKPKLPSRKDLRPYPNSCYLEYKGHTGAVTSISTDSSGEWIASGSTDGSVR 448

Query: 121 ---------------------FGYGKLKQVDVSKYERGADVLLLNTGFGNGEVRAKIKEF 180
                                  +  L ++ V     G D+  LNT  G  E +   KE 
Sbjct: 449 MWEVETGRCLKVWQFDEAIMCVAWNPLSRLPVLAVAMGRDLFFLNTELGTDEEQEITKER 508

Query: 181 VHVETLPATD------------------------------------------NSGST--- 225
           +H   +P  D                                           SG T   
Sbjct: 509 LHSGNIPEPDASVAAIVTWLPDELYGGIKIRHFKSISSIDWHRKGDYLSTVMASGETRGV 568

[Close]

BLAST of Lcy13g000160 vs. ExPASy Swiss-Prot
Match: Q0D6V7 (Ribosome biogenesis protein BOP1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=BOP1 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-46
Identity = 132/406 (32.51%), Postives = 170/406 (41.87%), Query Frame = 0


Query: 1   MEHIPTQEEINSHQLMY-EDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 60
           +E+IPTQEEI+S+QLMY EDRPKFIPR+F  +RSVPAY  AL++ F+RCLDLYLC R ++
Sbjct: 251 VEYIPTQEEIDSYQLMYEEDRPKFIPRKFDCLRSVPAYEKALREGFDRCLDLYLCPRTRK 310

Query: 61  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHK--------DAVVHWM---EPFGYGK 120
           KRINIDPESLKPKLPS+ DL P+P T YLE++GH         +A   W+      G  +
Sbjct: 311 KRINIDPESLKPKLPSKKDLRPYPRTCYLEFKGHNGPVKSLSVEATGQWIASGSSDGTIR 370

Query: 121 LKQVDVSKYER--------------------------GADVLLLNTGFGNGEVRAKIKEF 180
           + +V+  +  +                            D+LLLN   G+ + + K K  
Sbjct: 371 VWEVETGRCIKVWNVGGVVHRIAWNPSPDRHILAAVVDHDLLLLNAEVGDEDAQMKTKGL 430

Query: 181 VHVETLPATDNSG----------------------------------------------- 225
           + +E L   +++G                                               
Sbjct: 431 LQIEELAQEEDNGDKKPAVKWVKHEKFDGIMLIHHKAVSTVEWHFKGDYFTTVVPSGDSR 490

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BLAST of Lcy13g000160 vs. ExPASy Swiss-Prot
Match: A8ID74 (Ribosome biogenesis protein BOP1 homolog OS=Chlamydomonas reinhardtii OX=3055 GN=CHLREDRAFT_111274 PE=3 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 4.9e-24
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 2   EHIPTQEEINSHQLM-YEDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQRK 61
           E++PT+EE+ + Q+   EDRPK +P+ FTS+R+VPAY D +K+ FERCLDLYLC RV+RK
Sbjct: 370 EYLPTEEEVAAWQMADPEDRPKALPQAFTSLRAVPAYTDFIKERFERCLDLYLCPRVRRK 429

Query: 62  RINI-DPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAV 98
           R++I  PE L P+LP   DL PFPTT  L Y GH   V
Sbjct: 430 RLDIKSPEQLVPQLPKPRDLQPFPTTLALAYEGHMGPV 467

HSP 2 Score: 74.7 bits (182), Expect = 1.5e-12
Identity = 36/57 (63.16%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 168 VAFHRSYPLFASCSDDCTAYVFHGMVYADLTQNPLIVQLEILRGHENANGRGEEVDC 225
           VAFHRSYPLFAS +DD T  VFHGMVYADL  NPLIV ++ILRG           DC
Sbjct: 718 VAFHRSYPLFASAADDGTVQVFHGMVYADLLTNPLIVPVKILRGGHTVTASEGVADC 774

[Close]

BLAST of Lcy13g000160 vs. ExPASy Swiss-Prot
Match: P97452 (Ribosome biogenesis protein BOP1 OS=Mus musculus OX=10090 GN=Bop1 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.9e-21
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 2   EHIPTQEEINS--HQLMYEDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 61
           E++PT+EE ++   Q   E +  F+P++F S+R+VPAY   +++ FERCLDLYLC R ++
Sbjct: 305 EYLPTEEERSAWMQQEPVERKLNFLPQKFPSLRTVPAYSRFIQERFERCLDLYLCPRQRK 364

Query: 62  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAV 98
            R+N+DPE L PKLP   DL PFP  + L YRGH D V
Sbjct: 365 MRVNVDPEDLIPKLPRPRDLQPFPVCQALVYRGHSDLV 402

HSP 2 Score: 67.0 bits (162), Expect = 3.1e-10
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 161 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYADLTQNPLIVQLEILRGH 213
           H K +  VAFH  YPLFAS SDD +  V HGMVY DL QNPL+V +++L+GH
Sbjct: 648 HKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGH 699

[Close]

BLAST of Lcy13g000160 vs. ExPASy Swiss-Prot
Match: Q562C2 (Ribosome biogenesis protein BOP1 OS=Rattus norvegicus OX=10116 GN=Bop1 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-20
Identity = 49/98 (50.00%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 2   EHIPTQEEINS--HQLMYEDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 61
           E++PT+EE  +   Q   E +  F+P++F S+R+VPAY   +++ FERCLDLYLC R ++
Sbjct: 304 EYLPTEEERLAWMQQEPIERKLNFLPQKFPSLRTVPAYGRFIQERFERCLDLYLCPRQRK 363

Query: 62  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAV 98
            R+N+DPE L PKLP   DL PFP  + L YRGH D V
Sbjct: 364 MRVNVDPEDLIPKLPRPRDLQPFPVCQALVYRGHSDLV 401

HSP 2 Score: 67.0 bits (162), Expect = 3.1e-10
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 161 HPKDITNVAFHRSYPLFASCSDDCTAYVFHGMVYADLTQNPLIVQLEILRGH 213
           H K +  VAFH  YPLFAS SDD +  V HGMVY DL QNPL+V +++L+GH
Sbjct: 647 HKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGH 698

[Close]

BLAST of Lcy13g000160 vs. ExPASy TrEMBL
Match: A0A2N9FNB2 (Ribosome biogenesis protein BOP1 homolog OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16590 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.1e-71
Identity = 155/317 (48.90%), Postives = 188/317 (59.31%), Query Frame = 0


Query: 1   MEHIPTQEEINSHQLMY-EDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 60
           +E+IPTQEEINS+QLMY EDRPKFIPRR+TS+RS+PAY +A+KDVFERCLDLYLC RV++
Sbjct: 299 LEYIPTQEEINSYQLMYEEDRPKFIPRRYTSLRSIPAYDNAVKDVFERCLDLYLCPRVRK 358

Query: 61  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAVV--------------------- 120
           KRINIDPESLKPKLPSR DL P+P + YLEY+GH DAV                      
Sbjct: 359 KRINIDPESLKPKLPSRRDLKPYPVSCYLEYKGHTDAVTSISIDASGQWIASGSLDGTVR 418

Query: 121 -----------HW-----MEPFGYGKLKQVDVSKYERGADVLLLNTGFGNGEVRAKIKEF 180
                      +W     ++   +  L+++ +     G DVL+LNTGFG+ E + KIKE 
Sbjct: 419 IWEVETGRCLRNWEVGEAVQYVAWNPLRELPILAVSVGPDVLILNTGFGDEEEQKKIKEL 478

Query: 181 VHVETLPATDNSG----------------------------------------------- 225
           +HVET  A D+SG                                               
Sbjct: 479 LHVETPIAPDDSGNKVSIWLQDDKHEGIRLRHFKKQKQSKSSRSGLREVSSIALFRLDSW 538

[Close]

BLAST of Lcy13g000160 vs. ExPASy TrEMBL
Match: A0A5D3BNG8 (Ribosome biogenesis protein BOP1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001300 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 2.1e-70
Identity = 168/367 (45.78%), Postives = 189/367 (51.50%), Query Frame = 0


Query: 1   MEHIPTQEEINSHQLMY-EDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 60
           +E+IPTQEEINS+QLMY EDRPKFIPRRFTSMRSVPAY +ALKD FERCLDLYLC RV++
Sbjct: 297 LEYIPTQEEINSYQLMYEEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRK 356

Query: 61  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAVV--------HWM---------- 120
           KRINIDPESLKPKLP+R DL P+PTT YLE+RGHKDAV+         W+          
Sbjct: 357 KRINIDPESLKPKLPNRKDLRPYPTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVR 416

Query: 121 ----------------EPFGY---GKLKQVDVSKYERGADVLLLNTGFGNGEVRAKIKEF 180
                           EP  Y        + +     G DVLLLNTG G+GEV+AKIKE 
Sbjct: 417 IWEVETGRCLKVWELGEPVKYVAWNPKPDLPILAAAAGVDVLLLNTGLGDGEVQAKIKEV 476

Query: 181 VHVETLPATDNSGSTQ-------------------------------------------- 225
           +HV+ LPAT+NS  T                                             
Sbjct: 477 LHVDKLPATENSDKTPAATWLQDDKTGGIRLRHFKSVSAVEWHRKGDYLSTVLPADILFN 536

[Close]

BLAST of Lcy13g000160 vs. ExPASy TrEMBL
Match: A0A6J1D5R0 (Ribosome biogenesis protein BOP1 homolog OS=Momordica charantia OX=3673 GN=LOC111017555 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 8.0e-70
Identity = 171/405 (42.22%), Postives = 191/405 (47.16%), Query Frame = 0


Query: 1   MEHIPTQEEINSHQLMY-EDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 60
           ME+IPTQEEINS+QLMY EDRPKFIPRRFTSMRSVPAY +ALKD FERCLDLYLC RV++
Sbjct: 294 MEYIPTQEEINSYQLMYEEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRK 353

Query: 61  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAVV--------HW----------- 120
           KRINIDPESLKPKLPSR DL P+PTT YLEYRGHKD V+         W           
Sbjct: 354 KRINIDPESLKPKLPSRKDLKPYPTTCYLEYRGHKDVVISISTEANGQWIASGSLDGTVR 413

Query: 121 ------------------MEPFGYGKLKQVDVSKYERGADVLLLNTGFGNGEVRAKIKEF 180
                             ++   +  L ++ +     G DVLLLNTGFG+GEV+ KIKE 
Sbjct: 414 IWEVETGRCLKVWEVGEAVKYVAWNPLPELPILAVVVGIDVLLLNTGFGDGEVQTKIKEL 473

Query: 181 VHVETLPATDNSGSTQY------------------------------------------- 225
           +HVE LP TDNS  T                                             
Sbjct: 474 LHVEMLPETDNSDKTPVATWLQDDKIEGIRLRHFKTVSSVEWHRKGDYLSTVMPAGESRA 533

[Close]

BLAST of Lcy13g000160 vs. ExPASy TrEMBL
Match: A0A6J1GYI9 (Ribosome biogenesis protein BOP1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111458654 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 6.8e-69
Identity = 167/405 (41.23%), Postives = 192/405 (47.41%), Query Frame = 0


Query: 1   MEHIPTQEEINSHQLMY-EDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 60
           +E+IPTQEEINS+QLMY EDRPKFIPRRFTSMRSVPAY +ALKD FERCLDLYLC RV++
Sbjct: 314 LEYIPTQEEINSYQLMYDEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRK 373

Query: 61  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAVV--------HW----------- 120
           KRINIDPESLKPKLPSR DL P+PTT YLE+RGHKDAV+         W           
Sbjct: 374 KRINIDPESLKPKLPSRKDLRPYPTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVR 433

Query: 121 ------------------MEPFGYGKLKQVDVSKYERGADVLLLNTGFGNGEVRAKIKEF 180
                             ++   +  L ++ +     G DVLLLNTGFG+GEV+AK+KE 
Sbjct: 434 IWEVETGRCLKVWELEEAVKYVAWNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKVKEL 493

Query: 181 VHVETLPATDNSGSTQY------------------------------------------- 225
           +H++ LPATDNS  T                                             
Sbjct: 494 LHIDALPATDNSDKTPIATWLQDDKVEGIRLRHFKTVSSVEWHRKGDYLSTVMPAGESRG 553

[Close]

BLAST of Lcy13g000160 vs. ExPASy TrEMBL
Match: A0A6J1GZU4 (Ribosome biogenesis protein BOP1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111458654 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 6.8e-69
Identity = 167/405 (41.23%), Postives = 192/405 (47.41%), Query Frame = 0


Query: 1   MEHIPTQEEINSHQLMY-EDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 60
           +E+IPTQEEINS+QLMY EDRPKFIPRRFTSMRSVPAY +ALKD FERCLDLYLC RV++
Sbjct: 315 LEYIPTQEEINSYQLMYDEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRK 374

Query: 61  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAVV--------HW----------- 120
           KRINIDPESLKPKLPSR DL P+PTT YLE+RGHKDAV+         W           
Sbjct: 375 KRINIDPESLKPKLPSRKDLRPYPTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVR 434

Query: 121 ------------------MEPFGYGKLKQVDVSKYERGADVLLLNTGFGNGEVRAKIKEF 180
                             ++   +  L ++ +     G DVLLLNTGFG+GEV+AK+KE 
Sbjct: 435 IWEVETGRCLKVWELEEAVKYVAWNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKVKEL 494

Query: 181 VHVETLPATDNSGSTQY------------------------------------------- 225
           +H++ LPATDNS  T                                             
Sbjct: 495 LHIDALPATDNSDKTPIATWLQDDKVEGIRLRHFKTVSSVEWHRKGDYLSTVMPAGESRG 554

[Close]

BLAST of Lcy13g000160 vs. NCBI nr
Match: TYK00520.1 (WD40 [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 4.4e-70
Identity = 168/367 (45.78%), Postives = 189/367 (51.50%), Query Frame = 0


Query: 1   MEHIPTQEEINSHQLMY-EDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 60
           +E+IPTQEEINS+QLMY EDRPKFIPRRFTSMRSVPAY +ALKD FERCLDLYLC RV++
Sbjct: 297 LEYIPTQEEINSYQLMYEEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRK 356

Query: 61  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAVV--------HWM---------- 120
           KRINIDPESLKPKLP+R DL P+PTT YLE+RGHKDAV+         W+          
Sbjct: 357 KRINIDPESLKPKLPNRKDLRPYPTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVR 416

Query: 121 ----------------EPFGY---GKLKQVDVSKYERGADVLLLNTGFGNGEVRAKIKEF 180
                           EP  Y        + +     G DVLLLNTG G+GEV+AKIKE 
Sbjct: 417 IWEVETGRCLKVWELGEPVKYVAWNPKPDLPILAAAAGVDVLLLNTGLGDGEVQAKIKEV 476

Query: 181 VHVETLPATDNSGSTQ-------------------------------------------- 225
           +HV+ LPAT+NS  T                                             
Sbjct: 477 LHVDKLPATENSDKTPAATWLQDDKTGGIRLRHFKSVSAVEWHRKGDYLSTVLPADILFN 536

[Close]

BLAST of Lcy13g000160 vs. NCBI nr
Match: XP_022149038.1 (ribosome biogenesis protein BOP1 homolog [Momordica charantia])

HSP 1 Score: 273.5 bits (698), Expect = 1.7e-69
Identity = 171/405 (42.22%), Postives = 191/405 (47.16%), Query Frame = 0


Query: 1   MEHIPTQEEINSHQLMY-EDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 60
           ME+IPTQEEINS+QLMY EDRPKFIPRRFTSMRSVPAY +ALKD FERCLDLYLC RV++
Sbjct: 294 MEYIPTQEEINSYQLMYEEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRK 353

Query: 61  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAVV--------HW----------- 120
           KRINIDPESLKPKLPSR DL P+PTT YLEYRGHKD V+         W           
Sbjct: 354 KRINIDPESLKPKLPSRKDLKPYPTTCYLEYRGHKDVVISISTEANGQWIASGSLDGTVR 413

Query: 121 ------------------MEPFGYGKLKQVDVSKYERGADVLLLNTGFGNGEVRAKIKEF 180
                             ++   +  L ++ +     G DVLLLNTGFG+GEV+ KIKE 
Sbjct: 414 IWEVETGRCLKVWEVGEAVKYVAWNPLPELPILAVVVGIDVLLLNTGFGDGEVQTKIKEL 473

Query: 181 VHVETLPATDNSGSTQY------------------------------------------- 225
           +HVE LP TDNS  T                                             
Sbjct: 474 LHVEMLPETDNSDKTPVATWLQDDKIEGIRLRHFKTVSSVEWHRKGDYLSTVMPAGESRA 533

[Close]

BLAST of Lcy13g000160 vs. NCBI nr
Match: KAG6601624.1 (Ribosome biogenesis protein BOP1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 270.4 bits (690), Expect = 1.4e-68
Identity = 167/405 (41.23%), Postives = 192/405 (47.41%), Query Frame = 0


Query: 1   MEHIPTQEEINSHQLMY-EDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 60
           +E+IPTQEEINS+QLMY EDRPKFIPRRFTSMRSVPAY +ALKD FERCLDLYLC RV++
Sbjct: 314 LEYIPTQEEINSYQLMYDEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRK 373

Query: 61  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAVV--------HW----------- 120
           KRINIDPESLKPKLPSR DL P+PTT YLE+RGHKDAV+         W           
Sbjct: 374 KRINIDPESLKPKLPSRKDLRPYPTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVR 433

Query: 121 ------------------MEPFGYGKLKQVDVSKYERGADVLLLNTGFGNGEVRAKIKEF 180
                             ++   +  L ++ +     G DVLLLNTGFG+GEV+AK+KE 
Sbjct: 434 IWEVETGRCLKVWELEEAVKYVAWNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKVKEL 493

Query: 181 VHVETLPATDNSGSTQY------------------------------------------- 225
           +H++ LPATDNS  T                                             
Sbjct: 494 LHIDALPATDNSDKTPIATWLQDDKVEGIRLRHFKTVSSVEWHRKGDYLSTVMPAGESRG 553

[Close]

BLAST of Lcy13g000160 vs. NCBI nr
Match: XP_022957186.1 (ribosome biogenesis protein BOP1 homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 270.4 bits (690), Expect = 1.4e-68
Identity = 167/405 (41.23%), Postives = 192/405 (47.41%), Query Frame = 0


Query: 1   MEHIPTQEEINSHQLMY-EDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 60
           +E+IPTQEEINS+QLMY EDRPKFIPRRFTSMRSVPAY +ALKD FERCLDLYLC RV++
Sbjct: 314 LEYIPTQEEINSYQLMYDEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRK 373

Query: 61  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAVV--------HW----------- 120
           KRINIDPESLKPKLPSR DL P+PTT YLE+RGHKDAV+         W           
Sbjct: 374 KRINIDPESLKPKLPSRKDLRPYPTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVR 433

Query: 121 ------------------MEPFGYGKLKQVDVSKYERGADVLLLNTGFGNGEVRAKIKEF 180
                             ++   +  L ++ +     G DVLLLNTGFG+GEV+AK+KE 
Sbjct: 434 IWEVETGRCLKVWELEEAVKYVAWNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKVKEL 493

Query: 181 VHVETLPATDNSGSTQY------------------------------------------- 225
           +H++ LPATDNS  T                                             
Sbjct: 494 LHIDALPATDNSDKTPIATWLQDDKVEGIRLRHFKTVSSVEWHRKGDYLSTVMPAGESRG 553

[Close]

BLAST of Lcy13g000160 vs. NCBI nr
Match: XP_022957185.1 (ribosome biogenesis protein BOP1 homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 270.4 bits (690), Expect = 1.4e-68
Identity = 167/405 (41.23%), Postives = 192/405 (47.41%), Query Frame = 0


Query: 1   MEHIPTQEEINSHQLMY-EDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 60
           +E+IPTQEEINS+QLMY EDRPKFIPRRFTSMRSVPAY +ALKD FERCLDLYLC RV++
Sbjct: 315 LEYIPTQEEINSYQLMYDEDRPKFIPRRFTSMRSVPAYDNALKDAFERCLDLYLCPRVRK 374

Query: 61  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAVV--------HW----------- 120
           KRINIDPESLKPKLPSR DL P+PTT YLE+RGHKDAV+         W           
Sbjct: 375 KRINIDPESLKPKLPSRKDLRPYPTTCYLEFRGHKDAVMSISTEANGQWIASGSLDGTVR 434

Query: 121 ------------------MEPFGYGKLKQVDVSKYERGADVLLLNTGFGNGEVRAKIKEF 180
                             ++   +  L ++ +     G DVLLLNTGFG+GEV+AK+KE 
Sbjct: 435 IWEVETGRCLKVWELEEAVKYVAWNPLPELPILAAAVGVDVLLLNTGFGDGEVQAKVKEL 494

Query: 181 VHVETLPATDNSGSTQY------------------------------------------- 225
           +H++ LPATDNS  T                                             
Sbjct: 495 LHIDALPATDNSDKTPIATWLQDDKVEGIRLRHFKTVSSVEWHRKGDYLSTVMPAGESRG 554

[Close]

BLAST of Lcy13g000160 vs. TAIR 10
Match: AT2G40360.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 193.0 bits (489), Expect = 2.7e-49
Identity = 138/405 (34.07%), Postives = 166/405 (40.99%), Query Frame = 0


Query: 1   MEHIPTQEEINSHQLMY-EDRPKFIPRRFTSMRSVPAYYDALKDVFERCLDLYLCARVQR 60
           +E+IPT+EE  S++LM+ EDRPKFIP RFTS+RS+PAY +ALK+ FERCLDLYLC RV++
Sbjct: 329 LEYIPTEEEKASYELMFEEDRPKFIPTRFTSLRSIPAYENALKESFERCLDLYLCPRVRK 388

Query: 61  KRINIDPESLKPKLPSRNDLTPFPTTRYLEYRGHKDAVV--------HWMEP-------- 120
           KRINIDPESLKPKLPSR DL P+P + YLEY+GH  AV          W+          
Sbjct: 389 KRINIDPESLKPKLPSRKDLRPYPNSCYLEYKGHTGAVTSISTDSSGEWIASGSTDGSVR 448

Query: 121 ---------------------FGYGKLKQVDVSKYERGADVLLLNTGFGNGEVRAKIKEF 180
                                  +  L ++ V     G D+  LNT  G  E +   KE 
Sbjct: 449 MWEVETGRCLKVWQFDEAIMCVAWNPLSRLPVLAVAMGRDLFFLNTELGTDEEQEITKER 508

Query: 181 VHVETLPATD------------------------------------------NSGST--- 225
           +H   +P  D                                           SG T   
Sbjct: 509 LHSGNIPEPDASVAAIVTWLPDELYGGIKIRHFKSISSIDWHRKGDYLSTVMASGETRGV 568

The following BLAST results are available for this feature:

BLAST of Lcy13g000160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IH25	3.7e-48	34.07	Ribosome biogenesis protein BOP1 homolog OS=Arabidopsis thaliana OX=3702 GN=BOP1...	[more]
Q0D6V7	1.2e-46	32.51	Ribosome biogenesis protein BOP1 homolog OS=Oryza sativa subsp. japonica OX=3994...	[more]
A8ID74	4.9e-24	57.14	Ribosome biogenesis protein BOP1 homolog OS=Chlamydomonas reinhardtii OX=3055 GN...	[more]
P97452	3.9e-21	50.00	Ribosome biogenesis protein BOP1 OS=Mus musculus OX=10090 GN=Bop1 PE=1 SV=1	[more]
Q562C2	1.5e-20	50.00	Ribosome biogenesis protein BOP1 OS=Rattus norvegicus OX=10116 GN=Bop1 PE=1 SV=1	[more]

BLAST of Lcy13g000160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9FNB2	1.1e-71	48.90	Ribosome biogenesis protein BOP1 homolog OS=Fagus sylvatica OX=28930 GN=FSB_LOCU...	[more]
A0A5D3BNG8	2.1e-70	45.78	Ribosome biogenesis protein BOP1 homolog OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1D5R0	8.0e-70	42.22	Ribosome biogenesis protein BOP1 homolog OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1GYI9	6.8e-69	41.23	Ribosome biogenesis protein BOP1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1GZU4	6.8e-69	41.23	Ribosome biogenesis protein BOP1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Lcy13g000160 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00520.1	4.4e-70	45.78	WD40 [Cucumis melo var. makuwa]	[more]
XP_022149038.1	1.7e-69	42.22	ribosome biogenesis protein BOP1 homolog [Momordica charantia]	[more]
KAG6601624.1	1.4e-68	41.23	Ribosome biogenesis protein BOP1-like protein, partial [Cucurbita argyrosperma s...	[more]
XP_022957186.1	1.4e-68	41.23	ribosome biogenesis protein BOP1 homolog isoform X2 [Cucurbita moschata]	[more]
XP_022957185.1	1.4e-68	41.23	ribosome biogenesis protein BOP1 homolog isoform X1 [Cucurbita moschata]	[more]

BLAST of Lcy13g000160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40360.1	2.7e-49	34.07	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 151..190 e-value: 0.001 score: 28.3
IPR012953	BOP1, N-terminal domain	SMART	SM01035	BOP1NT_2	coord: 1..83 e-value: 0.001 score: -106.3
IPR012953	BOP1, N-terminal domain	PFAM	PF08145	BOP1NT	coord: 2..83 e-value: 1.8E-27 score: 96.9
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 150..225 e-value: 1.2E-22 score: 82.5
IPR028598	WD repeat BOP1/Erb1	PANTHER	PTHR17605	RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN	coord: 2..98 coord: 160..219
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 154..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy13g000160.1	Lcy13g000160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
biological_process	GO:0042254	ribosome biogenesis
molecular_function	GO:0005515	protein binding