Lcy12g021220 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g021220
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ATP synthase subunit e, mitochondrial
Location	Chr12: 48297195 .. 48298887 (+)
RNA-Seq Expression	Lcy12g021220
Synteny	Lcy12g021220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCACACGTCAGCCTGGTGGAATTGATAGATGCTTCGGATCCAAAATTGCAGAAGAAATTAGGGTTTTACGATTGAGGTGGGAAAGGTGAACTCATTAGCACTCGAAGGAGACGAGTCCAAGCATTTCTGTGTTGAGGCTGATATCATCATTTACATCTAATGGCGCCCCCTCCTGGCCCTTACTCCGGCACCAGCACTCTCGCTCTGGTATTTGTCTTTTCTTTTACCTCTAATCGTCTGCAGAACTACTTTTTCTTATATTTCCGATTTTTATTACCTTGATCCCTATCATGTCCCGTATCCATCTTTTTTCTTTAAGGGTTTAGAGTTGTATTTAATTGCATCAGGTTGATCGATTTAGAATTCTCAATTGCGTGGTAATTGGTGCGAATGGATATCTGCGATTGAAAATTTTGATTTTCTTTTATGTATTTCTTCATTCCATTATGTTGAAATCCTTTCTTGGGAATCAAATGGATCGGTTCATTTTAGATTCTAAGCTTTTTCTCGCCTTTTATGTCCCAATTTTTTGGGTTTTCATTTCTTCAGGTAGCCCGTGCATCAGCATTCACCTTTGGTTTGGTTTATGGAAGCATTAAGCTCAAGGTTCTGAAGGTAAATTGGAATCAGCTGTTGTTTTAGCCTTTGCTGTTGTGGTAAATTTATTGAAATAGTTATTTGTGTTGGGCATGGGTTTGATTGTTCGGTGCCTCTGTCTATAAATCAACTCCATGTTTATTACAAGTTTGTAAATATTAGTGACCATTTCACTCGTTCATTCAGTTGAGTCATGTAACCTGTGTCTTTAATGGTTTTAACTTGTTTTCTTTCGAAGACGAGATTGCCCTATTTTCATCGACATTTCTAATTTAAGGAAGAAGTCTTGTTGGAAACTTAAAGTTCAATCTTGTGGCTGTTTATTGGCCCAAACGCGATCCCAAATTTTTTATGGTTGAATAGTTATTCAGAAGCCTTGATCCATGAGCCATTTGTACTGGATAATGAAGTTTCTTCTACTGGTTACGTCAACTTTCATGCCATGTCATTTGTTTTTTATTACGAAAAAGATACAGGATGTAGATCTGTCTTATAACTTATGTACCTTAATTAGTTAATTGTATAGAATATGAATTTGATTGTGTAAGAACGTATCTTTTGGTTGTATTTTGGTGCATTTGCCAGGCAAAGGCCAAGTCACATGCGAAAGCTGAAGCCAAGGCCCATCATTGATGAAAACATTTACTGATGTAGCTTGTAGCGATGGAAGAGATGGAAATTACCGCATAGGGAGAGACTCTGATCATTGATTGGAGAAATGTGATTTTTGGCTGATGATTTATTAGATTCTGTTTTTTTTTACTTCTGAAACAAAAGAAAATTTCTTTGTTTAAACGAGGCTGGTATTGCAAATACTGTATGGTGTATGCTTAGTTTTTCGGTTGCAATTGGCAATTCTGCCTGTGAGAAGAATGTTCTTGAAATAAAGGTGATGTACCGTTCAGATAAATAAGACTCGTTTGAGACTTTTGTCTAATCACGATAACCACACTAGTTTCTCTTTCAAGCTTCAACTTACGATTGGCTTTGATCTCTCTTTCCTGTGGTTCAATTTATAGGTCGTGTTCCAAGAAAGGGATACATAAGAACCTTCGGTGATCATGGTCATAGTGGAGGTAACTCAGATGAAAGGAA

mRNA sequence

GGCACACGTCAGCCTGGTGGAATTGATAGATGCTTCGGATCCAAAATTGCAGAAGAAATTAGGGTTTTACGATTGAGGTGGGAAAGGTGAACTCATTAGCACTCGAAGGAGACGAGTCCAAGCATTTCTGTGTTGAGGCTGATATCATCATTTACATCTAATGGCGCCCCCTCCTGGCCCTTACTCCGGCACCAGCACTCTCGCTCTGGTAGCCCGTGCATCAGCATTCACCTTTGGTTTGGTTTATGGAAGCATTAAGCTCAAGGTTCTGAAGGCAAAGGCCAAGTCACATGCGAAAGCTGAAGCCAAGGCCCATCATTGATGAAAACATTTACTGATGTAGCTTGTAGCGATGGAAGAGATGGAAATTACCGCATAGGGAGAGACTCTGATCATTGATTGGAGAAATGTGATTTTTGGCTGATGATTTATTAGATTCTGTTTTTTTTTACTTCTGAAACAAAAGAAAATTTCTTTGTTTAAACGAGGCTGGTATTGCAAATACTGTATGGTGTATGCTTAGTTTTTCGGTTGCAATTGGCAATTCTGCCTGTGAGAAGAATGTTCTTGAAATAAAGGTGATGTACCGTTCAGATAAATAAGACTCGTTTGAGACTTTTGTCTAATCACGATAACCACACTAGTTTCTCTTTCAAGCTTCAACTTACGATTGGCTTTGATCTCTCTTTCCTGTGGTTCAATTTATAGGTCGTGTTCCAAGAAAGGGATACATAAGAACCTTCGGTGATCATGGTCATAGTGGAGGTAACTCAGATGAAAGGAA

Coding sequence (CDS)

ATGGCGCCCCCTCCTGGCCCTTACTCCGGCACCAGCACTCTCGCTCTGGTAGCCCGTGCATCAGCATTCACCTTTGGTTTGGTTTATGGAAGCATTAAGCTCAAGGTTCTGAAGGCAAAGGCCAAGTCACATGCGAAAGCTGAAGCCAAGGCCCATCATTGA

Protein sequence

MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH

Homology

[Close]

BLAST of Lcy12g021220 vs. ExPASy TrEMBL
Match: A0A6J1BT37 (ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005275 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-18
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAFTFG+VYGSIKLKVLKAKAKSHAKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKAKAKSHAKAEAKAHH 53

[Close]

BLAST of Lcy12g021220 vs. ExPASy TrEMBL
Match: A0A1S3CRK7 (uncharacterized protein LOC103503894 OS=Cucumis melo OX=3656 GN=LOC103503894 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-17
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAFTFGLVYG+IKLKVLKAKAKS AKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSRAKAEAKAHH 53

[Close]

BLAST of Lcy12g021220 vs. ExPASy TrEMBL
Match: A0A0A0LH44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866500 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.2e-17
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAF+FGLVYGSIKLKVLKAKAKS AKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 53

[Close]

BLAST of Lcy12g021220 vs. ExPASy TrEMBL
Match: A0A2N9G4U9 (ATP synthase subunit e, mitochondrial OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25569 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.4e-17
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAF+FGLVYGSIKLK LKAKAKSH KAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKYLKAKAKSHQKAEAKAHH 53

[Close]

BLAST of Lcy12g021220 vs. ExPASy TrEMBL
Match: A0A6J1IIN9 (uncharacterized protein LOC111473599 OS=Cucurbita maxima OX=3661 GN=LOC111473599 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 54
          MA PPGPYSGTSTLALVARASAFTFGLVYG+IKLKVLKAKAKSHAKAEAK HH
Sbjct: 1  MALPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSHAKAEAKTHH 53

[Close]

BLAST of Lcy12g021220 vs. NCBI nr
Match: XP_022132454.1 (uncharacterized protein LOC111005275 [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 5.9e-18
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAFTFG+VYGSIKLKVLKAKAKSHAKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKAKAKSHAKAEAKAHH 53

[Close]

BLAST of Lcy12g021220 vs. NCBI nr
Match: XP_038898502.1 (uncharacterized protein LOC120086120 [Benincasa hispida])

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 54
          MA PPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH
Sbjct: 1  MATPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 53

[Close]

BLAST of Lcy12g021220 vs. NCBI nr
Match: XP_008466504.1 (PREDICTED: uncharacterized protein LOC103503894 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 5.0e-17
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAFTFGLVYG+IKLKVLKAKAKS AKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSRAKAEAKAHH 53

[Close]

BLAST of Lcy12g021220 vs. NCBI nr
Match: XP_004147837.1 (uncharacterized protein LOC101217057 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 6.5e-17
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAF+FGLVYGSIKLKVLKAKAKS AKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 53

[Close]

BLAST of Lcy12g021220 vs. NCBI nr
Match: KAG2689214.1 (hypothetical protein I3760_09G129700 [Carya illinoinensis] >KAG6642297.1 hypothetical protein CIPAW_09G132900 [Carya illinoinensis] >KAG6696106.1 hypothetical protein I3842_09G130800 [Carya illinoinensis] >KAG7963641.1 hypothetical protein I3843_09G128500 [Carya illinoinensis])

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 48/53 (90.57%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAFTFG+VYGS+KLK+LKAKAKSH KA+AKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSLKLKILKAKAKSHQKAQAKAHH 53

[Close]

BLAST of Lcy12g021220 vs. TAIR 10
Match: AT3G01130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-15
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 54
          MAPPPG YSGTSTLALVARASAF  GL+YG+IKLK LK K  S  KAEAKAHH
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKIKKNSQIKAEAKAHH 53

[Close]

BLAST of Lcy12g021220 vs. TAIR 10
Match: AT5G15320.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-12
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 54
          M  PPG YSGTS+LALVARASAF  GLVYG++KLKVLK K+ S  K EA AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKVLKIKSMSQKKVEATAHH 53

[Close]

BLAST of Lcy12g021220 vs. TAIR 10
Match: AT3G01130.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 5.7e-11
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAK 41
          MAPPPG YSGTSTLALVARASAF  GL+YG+IKLK LK K
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKHK 40

[Close]

BLAST of Lcy12g021220 vs. TAIR 10
Match: AT5G15320.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-10
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGSIKLKVLKAKAKSHAKAEAKAHH 54
          M  PPG YSGTS+LALVARASAF  GLVYG++KLK+   K+ S  K EA AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKI---KSMSQKKVEATAHH 50

The following BLAST results are available for this feature:

BLAST of Lcy12g021220 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g021220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BT37	2.9e-18	98.11	ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A1S3CRK7	2.4e-17	96.23	uncharacterized protein LOC103503894 OS=Cucumis melo OX=3656 GN=LOC103503894 PE=...	[more]
A0A0A0LH44	3.2e-17	96.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866500 PE=4 SV=1	[more]
A0A2N9G4U9	5.4e-17	94.34	ATP synthase subunit e, mitochondrial OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25...	[more]
A0A6J1IIN9	1.2e-16	94.34	uncharacterized protein LOC111473599 OS=Cucurbita maxima OX=3661 GN=LOC111473599...	[more]

BLAST of Lcy12g021220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132454.1	5.9e-18	98.11	uncharacterized protein LOC111005275 [Momordica charantia]	[more]
XP_038898502.1	2.2e-17	98.11	uncharacterized protein LOC120086120 [Benincasa hispida]	[more]
XP_008466504.1	5.0e-17	96.23	PREDICTED: uncharacterized protein LOC103503894 [Cucumis melo]	[more]
XP_004147837.1	6.5e-17	96.23	uncharacterized protein LOC101217057 [Cucumis sativus]	[more]
KAG2689214.1	1.1e-16	90.57	hypothetical protein I3760_09G129700 [Carya illinoinensis] >KAG6642297.1 hypothe...	[more]

BLAST of Lcy12g021220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01130.1	1.7e-15	79.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G15320.1	1.4e-12	71.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G01130.2	5.7e-11	82.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G15320.2	3.7e-10	66.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36028:SF4	SUBFAMILY NOT NAMED	coord: 1..53
None	No IPR available	PANTHER	PTHR36028	OSJNBB0050O03.8 PROTEIN	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g021220.1	Lcy12g021220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	proton transmembrane transporter activity