Lcy12g020830 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g020830
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	myrosinase-binding protein 2-like
Location	Chr12: 48036168 .. 48037055 (-)
RNA-Seq Expression	Lcy12g020830
Synteny	Lcy12g020830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCTAAGTAATGAATGTGCTCATTTTTCTGTAAATCTCTCAGTTGGCTTTGGTTTGTTTCATTTCATGGCGTTTTTGTCTCTGCCAAAATGACTGCTACTGCTAGAACTTACGTTTTGATATTCTTCTTCTGGGCAATCCTCACAGTCATTACACCCACTTTAATTTTCCTTTCACAAAACTCCAAACTTGCCTTTGCCGATTCAACCAGTAAGGAAATTTGTTTCGTTGTGTAATGATATTGAATTGATTTTCTTTTGCTCTTTTTATGTTCTGCCTTTGATTTCAAAATTGATTCAGCAATTATTGTTCATGTTACAATTGGCAGGTGAGAAAAGTGCGGAAATCAAAATCAGAAAAATGATGGGCCATTATTTAGAAGAAGACTCCATGAAAACGATTATGGCTTTGGTTAAAATGCAGGCAGTGGCATCAGGGGCTGTCGTAGTGCCGGTGCCGGCGTCGGCGCCGACACTGGAAAGCTCTGTTGGGATTCATAAAAAGAGAAGAGAACAAGAAGATTATGTTAGCAAGCAAGACACTATTATGTACAAAGAGATAGTGGCGCAAATGCTTTTTGAAGTATGAGGAGAGAGCAATTTCAGGTACAGACTACAGACATGGGATGAAAAATATCAATATAAAGAGAAAAACAGTCCCAATTTGTTTGGTGTCTCTTTCATATTGTCTTTTTTGGCTCAATAATTTTGTGATATAAAGTGAAAGAAACGAGGCCAAATTCAATTTTTATCCTTCAAAACTTAGAGTTATATCAATTTTCACCCTAGATTTCCAAATCATCAAATTCGACCTTCAACTTAAACAAGTGTTCTAATTCTTACCCCACCATTCAATTTCCAGTTATTCATCAACTAGTTTTAATAAAAG

mRNA sequence

CAGCTAAGTAATGAATGTGCTCATTTTTCTGTAAATCTCTCAGTTGGCTTTGGTTTGTTTCATTTCATGGCGTTTTTGTCTCTGCCAAAATGACTGCTACTGCTAGAACTTACGTTTTGATATTCTTCTTCTGGGCAATCCTCACAGTCATTACACCCACTTTAATTTTCCTTTCACAAAACTCCAAACTTGCCTTTGCCGATTCAACCAGTGAGAAAAGTGCGGAAATCAAAATCAGAAAAATGATGGGCCATTATTTAGAAGAAGACTCCATGAAAACGATTATGGCTTTGGTTAAAATGCAGGCAGTGGCATCAGGGGCTGTCGTAGTGCCGGTGCCGGCGTCGGCGCCGACACTGGAAAGCTCTGTTGGGATTCATAAAAAGAGAAGAGAACAAGAAGATTATGTTAGCAAGCAAGACACTATTATGTACAAAGAGATAGTGGCGCAAATGCTTTTTGAAGTATGAGGAGAGAGCAATTTCAGGTACAGACTACAGACATGGGATGAAAAATATCAATATAAAGAGAAAAACAGTCCCAATTTGTTTGGTGTCTCTTTCATATTGTCTTTTTTGGCTCAATAATTTTGTGATATAAAGTGAAAGAAACGAGGCCAAATTCAATTTTTATCCTTCAAAACTTAGAGTTATATCAATTTTCACCCTAGATTTCCAAATCATCAAATTCGACCTTCAACTTAAACAAGTGTTCTAATTCTTACCCCACCATTCAATTTCCAGTTATTCATCAACTAGTTTTAATAAAAG

Coding sequence (CDS)

ATGTGCTCATTTTTCTGTAAATCTCTCAGTTGGCTTTGGTTTGTTTCATTTCATGGCGTTTTTGTCTCTGCCAAAATGACTGCTACTGCTAGAACTTACGTTTTGATATTCTTCTTCTGGGCAATCCTCACAGTCATTACACCCACTTTAATTTTCCTTTCACAAAACTCCAAACTTGCCTTTGCCGATTCAACCAGTGAGAAAAGTGCGGAAATCAAAATCAGAAAAATGATGGGCCATTATTTAGAAGAAGACTCCATGAAAACGATTATGGCTTTGGTTAAAATGCAGGCAGTGGCATCAGGGGCTGTCGTAGTGCCGGTGCCGGCGTCGGCGCCGACACTGGAAAGCTCTGTTGGGATTCATAAAAAGAGAAGAGAACAAGAAGATTATGTTAGCAAGCAAGACACTATTATGTACAAAGAGATAGTGGCGCAAATGCTTTTTGAAGTATGA

Protein sequence

MCSFFCKSLSWLWFVSFHGVFVSAKMTATARTYVLIFFFWAILTVITPTLIFLSQNSKLAFADSTSEKSAEIKIRKMMGHYLEEDSMKTIMALVKMQAVASGAVVVPVPASAPTLESSVGIHKKRREQEDYVSKQDTIMYKEIVAQMLFEV

Homology

[Close]

BLAST of Lcy12g020830 vs. ExPASy TrEMBL
Match: A0A6J1C406 (uncharacterized protein LOC111004493 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111004493 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.3e-33
Identity = 99/149 (66.44%), Postives = 115/149 (77.18%), Query Frame = 0


Query: 3   SFFCKSLSWLWFVSFHGVFVSAKMTATARTYVLIFFFWAILTVITPTLIFLSQNSKLAFA 62
           S F +SLS       H +FVSAKM  TARTYVLIFFFWAILTVITPTLIFLS+NS+LA A
Sbjct: 20  SAFPQSLS----SQLHVLFVSAKM--TARTYVLIFFFWAILTVITPTLIFLSENSRLASA 79

Query: 63  DSTSEKSAEIKIRKMMGHYLEEDSMKTIMALVKMQAVASGAVVVPVPASAPTLESSVGIH 122
           DST +KSA+IK RKMMG  + EDSM+T+MALVKMQAVA+  V    PA APTLE SV + 
Sbjct: 80  DSTGQKSAKIKTRKMMGRSV-EDSMQTLMALVKMQAVAT--VAAQAPAPAPTLEISVEVP 139

Query: 123 KKRREQEDYVSKQDTIMYKEIVAQMLFEV 152
           +K  E+++Y SKQD +MYKE V QMLFEV
Sbjct: 140 EKGGEKQNYNSKQD-VMYKETVVQMLFEV 158

[Close]

BLAST of Lcy12g020830 vs. ExPASy TrEMBL
Match: A0A6J1CMG7 (uncharacterized protein LOC111004493 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111004493 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.1e-17
Identity = 61/97 (62.89%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 55  QNSKLAFADSTSEKSAEIKIRKMMGHYLEEDSMKTIMALVKMQAVASGAVVVPVPASAPT 114
           +NS+LA ADST +KSA+IK RKMMG  + EDSM+T+MALVKMQAVA+  V    PA APT
Sbjct: 48  ENSRLASADSTGQKSAKIKTRKMMGRSV-EDSMQTLMALVKMQAVAT--VAAQAPAPAPT 107

Query: 115 LESSVGIHKKRREQEDYVSKQDTIMYKEIVAQMLFEV 152
           LE SV + +K  E+++Y SKQD +MYKE V QMLFEV
Sbjct: 108 LEISVEVPEKGGEKQNYNSKQD-VMYKETVVQMLFEV 140

[Close]

BLAST of Lcy12g020830 vs. ExPASy TrEMBL
Match: A0A7N2KSG0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.5e-08
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 31  RTYVLIFFFWAILTVITPTLIFLSQNSKLAFADSTSEKSAEIKIRKMMGHYLEEDSMKTI 90
           RT+VLIFFFWA+LT+ITPTLI LS+NSK    D   +K   IK+RKMM  Y+E+ S K  
Sbjct: 3   RTFVLIFFFWAVLTIITPTLIILSENSKPKL-DLNGQKDEVIKVRKMM-LYIEKYSTKIP 62

Query: 91  MALVKMQAVASGAVVVPVPASAPTLESSV 120
           +AL   +A A      P PA APT  S+V
Sbjct: 63  IALAPKEAPAPAP--APAPAPAPTPISAV 87

[Close]

BLAST of Lcy12g020830 vs. ExPASy TrEMBL
Match: A0A2I4HM67 (myrosinase-binding protein 2-like OS=Juglans regia OX=51240 GN=LOC109019428 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.5e-07
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 31  RTYVLIFFFWAILTVITPTLIFLSQNSKLAFADSTSEKSAEIKIRKMMGHYLEEDSMKTI 90
           RT+VLI FFWA+LT+ITPTLI LS+NSKL  ++    +  E + R+MMG   ++   K  
Sbjct: 3   RTFVLICFFWAVLTIITPTLILLSENSKLLDSNGEKSEGVEAQPRRMMGFADQKRPSKAP 62

Query: 91  MALVKMQAVASGAVVVPVPASAPTLESSVGIHKKR 126
           + L  M+A A      P PA A    S+  +  KR
Sbjct: 63  IPLPLMEAPAPAPAPAPAPAPAVKQASNPALRAKR 97

[Close]

BLAST of Lcy12g020830 vs. ExPASy TrEMBL
Match: A0A6A4PQ10 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr11g0062291 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 31  RTYVLIFFFWAILTVITPTLIFLSQNSKLAFADSTSEKSAEIKIRKMMGHYLEEDSMKTI 90
           RT V IFF WA+LT++TPTLIFLS+NSK     + +  S  +K RKM G+   +D ++T+
Sbjct: 4   RTLVPIFFVWALLTIVTPTLIFLSENSKADLHLNGNYTSEGMKARKMFGYTQNDDIIRTL 63

Query: 91  MALVKM----QAVASGAVVVPVPASAPTLE 117
            +L K     + VAS +   P PA AP  E
Sbjct: 64  PSLPKSVEAEEEVASASASAPAPAPAPAPE 93

[Close]

BLAST of Lcy12g020830 vs. NCBI nr
Match: XP_022135153.1 (uncharacterized protein LOC111004493 isoform X1 [Momordica charantia])

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-32
Identity = 99/149 (66.44%), Postives = 115/149 (77.18%), Query Frame = 0


Query: 3   SFFCKSLSWLWFVSFHGVFVSAKMTATARTYVLIFFFWAILTVITPTLIFLSQNSKLAFA 62
           S F +SLS       H +FVSAKM  TARTYVLIFFFWAILTVITPTLIFLS+NS+LA A
Sbjct: 20  SAFPQSLS----SQLHVLFVSAKM--TARTYVLIFFFWAILTVITPTLIFLSENSRLASA 79

Query: 63  DSTSEKSAEIKIRKMMGHYLEEDSMKTIMALVKMQAVASGAVVVPVPASAPTLESSVGIH 122
           DST +KSA+IK RKMMG  + EDSM+T+MALVKMQAVA+  V    PA APTLE SV + 
Sbjct: 80  DSTGQKSAKIKTRKMMGRSV-EDSMQTLMALVKMQAVAT--VAAQAPAPAPTLEISVEVP 139

Query: 123 KKRREQEDYVSKQDTIMYKEIVAQMLFEV 152
           +K  E+++Y SKQD +MYKE V QMLFEV
Sbjct: 140 EKGGEKQNYNSKQD-VMYKETVVQMLFEV 158

[Close]

BLAST of Lcy12g020830 vs. NCBI nr
Match: XP_022142779.1 (uncharacterized protein LOC111004493 isoform X2 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 6.4e-17
Identity = 61/97 (62.89%), Postives = 75/97 (77.32%), Query Frame = 0


Query: 55  QNSKLAFADSTSEKSAEIKIRKMMGHYLEEDSMKTIMALVKMQAVASGAVVVPVPASAPT 114
           +NS+LA ADST +KSA+IK RKMMG  + EDSM+T+MALVKMQAVA+  V    PA APT
Sbjct: 48  ENSRLASADSTGQKSAKIKTRKMMGRSV-EDSMQTLMALVKMQAVAT--VAAQAPAPAPT 107

Query: 115 LESSVGIHKKRREQEDYVSKQDTIMYKEIVAQMLFEV 152
           LE SV + +K  E+++Y SKQD +MYKE V QMLFEV
Sbjct: 108 LEISVEVPEKGGEKQNYNSKQD-VMYKETVVQMLFEV 140

[Close]

BLAST of Lcy12g020830 vs. NCBI nr
Match: XP_030950546.1 (uncharacterized protein LOC115974360 [Quercus lobata])

HSP 1 Score: 67.8 bits (164), Expect = 9.3e-08
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 31  RTYVLIFFFWAILTVITPTLIFLSQNSKLAFADSTSEKSAEIKIRKMMGHYLEEDSMKTI 90
           RT+VLIFFFWA+LT+ITPTLI LS+NSK    D   +K   IK+RKMM  Y+E+ S K  
Sbjct: 3   RTFVLIFFFWAVLTIITPTLIILSENSKPKL-DLNGQKDEVIKVRKMM-LYIEKYSTKIP 62

Query: 91  MALVKMQAVASGAVVVPVPASAPTLESSV 120
           +AL   +A A      P PA APT  S+V
Sbjct: 63  IALAPKEAPAPAP--APAPAPAPTPISAV 87

[Close]

BLAST of Lcy12g020830 vs. NCBI nr
Match: KAF3964886.1 (hypothetical protein CMV_010879 [Castanea mollissima])

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-07
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 31  RTYVLIFFFWAILTVITPTLIFLSQNSKLAFADSTSEKSAEIKIRKMMGHYLEEDSMKTI 90
           RT+VLIFFFWA+LT+ITPTLI LS+NSK    D   +K   +K+RKMM  Y+E+ S K  
Sbjct: 3   RTFVLIFFFWAVLTIITPTLIVLSENSKPKL-DLIGQKDEVMKVRKMM-LYIEKYSTKIP 62

Query: 91  MALVKMQAVASGAVVVPVPASAPTLESSV 120
           +AL   +A        P PA APT  S+V
Sbjct: 63  IALAPKEA--------PAPAPAPTPISAV 81

[Close]

BLAST of Lcy12g020830 vs. NCBI nr
Match: XP_040995953.1 (E3 ubiquitin-protein ligase TRIM33 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 31  RTYVLIFFFWAILTVITPTLIFLSQNSKLAFADSTSEKSAEIKI--RKMMGHYLEEDSMK 90
           RT+VLI FFWA+LT+ITPTLI LS+NSKL   DS  EKS  +K   R+MMG   ++   K
Sbjct: 3   RTFVLICFFWAVLTIITPTLILLSENSKL--LDSNGEKSGGVKAQPRRMMGFADQKRPSK 62

Query: 91  TIMALVKMQAVASGAVVVPVPASAPTLESSVGIHKKR 126
             + L  M+A A      P PA A    S+  +  KR
Sbjct: 63  ASIPLPLMEAPAPAPAPAPAPAPAVKQASNPTLRAKR 97

[Close]

BLAST of Lcy12g020830 vs. TAIR 10
Match: AT5G42785.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 8.6e-04
Identity = 33/107 (30.84%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 31  RTYVLIFFFWAILTVITPTLIFLSQNSK--LAFADSTSEKSAEIKIRKMMGHYLEEDSMK 90
           R YV+IFFFWA+LT+ITP L+  SQ+ K     ++   +K  +   R+MMG+  E    +
Sbjct: 4   RAYVMIFFFWALLTIITPMLVSWSQSLKNLPPLSNDQEQKIKDSGPRRMMGYSEEMHLAQ 63

Query: 91  TIMALVKMQAVASGAVVVPVPASAPTLESSVGIHKKRREQEDYVSKQ 136
             ++ V+ + +     + P P     + S   +  K  +QE  V+K+
Sbjct: 64  EFVSHVEEEKLMMEPSMAPTPEDNHVMPSLSSLRIK--QQEGLVAKR 108

The following BLAST results are available for this feature:

BLAST of Lcy12g020830 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g020830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C406	5.3e-33	66.44	uncharacterized protein LOC111004493 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CMG7	3.1e-17	62.89	uncharacterized protein LOC111004493 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A7N2KSG0	4.5e-08	52.81	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2I4HM67	6.5e-07	42.11	myrosinase-binding protein 2-like OS=Juglans regia OX=51240 GN=LOC109019428 PE=4...	[more]
A0A6A4PQ10	1.9e-06	44.44	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr11g0062291 PE=4 SV=1	[more]

BLAST of Lcy12g020830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135153.1	1.1e-32	66.44	uncharacterized protein LOC111004493 isoform X1 [Momordica charantia]	[more]
XP_022142779.1	6.4e-17	62.89	uncharacterized protein LOC111004493 isoform X2 [Momordica charantia]	[more]
XP_030950546.1	9.3e-08	52.81	uncharacterized protein LOC115974360 [Quercus lobata]	[more]
KAF3964886.1	7.8e-07	50.56	hypothetical protein CMV_010879 [Castanea mollissima]	[more]
XP_040995953.1	1.0e-06	46.39	E3 ubiquitin-protein ligase TRIM33 [Juglans microcarpa x Juglans regia]	[more]

BLAST of Lcy12g020830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42785.1	8.6e-04	30.84	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38396	TRANSMEMBRANE PROTEIN	coord: 30..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g020830.1	Lcy12g020830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane