Lcy12g020440 (gene) Sponge gourd (P93075) v1

Overview
NameLcy12g020440
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description30S ribosomal protein S9
LocationChr12: 47701751 .. 47703866 (-)
RNA-Seq ExpressionLcy12g020440
SyntenyLcy12g020440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATCCACTGCAGTTTCAATTTCGCGAAGAAACCACCTCCATTCTGGATAGAGCTCGAAAATGGCTACTTCTATATCCTCTCTCGCATTTTCTCTTTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGAAGCCAAATGCCCTGTCCTTTCCCCGCTCAAAATCTCTTGTAATTTCCCATACGGGCACCAATTCCCCACTTGTGGTATCTGCCTCCGCCGCTGCCGGGGTTGAGACGGCGGAACTTAGGAACTTCGTGAAATCGAGGCTCCCTGGTGGCTTTGCCGCGCAAACGCTGATCGGCACTGGTCGCCGGAAATCTGCCGTTGCTCGTGTTGTCCTAAAAGAAGGCACTGGCAAAGTTATTATCAATTACCGCGATGCTAAGGTCCTCTATCGTTTCCTTTATTCGTGTACTTGCCTTTAGTTTAATTCATCTTGGTTTCCTGATTTTGGTACTGGATGTTCTTTGGACGATTTAGGGTTTTTGTGTCTTTTGCTTAATTCGACTAGGTTGGTTGGATGGGAATGCAAGTGTTTTTTGGATTAAACCGAAGATTGTCATGATAGAATTGTGATTTCCGTTTTCTATTGTTTAGTTCTTTTGGTCAGTCTTTGTTATCGATCTGCGGCAATTATTATGTTGAATTGGGATTTGGGAATGAACTTGAGAACAAAAGTCTTGACATTCTAGAGCATTTAAGACTCTTTAACACTAAATTCTAGGATTTTCGCCTCTTCGTCTCATATGGTAAACTTAGATTAGATTCCATTGCTTGGTGCCAAATGCAGAGGGATTGTGGAAGAGTGGTTTCATCCATCACTAGGGATAAAGGACTGTTACGACTGTATCTATATGTTGTGCTTCTTTTAAGTTTGAGTTTCGGCTTCCAGTGAAATAATTCTAAATGCCAAAAGACATGTCTATTAGGGAAACTGAGCAATTCCCTCGTTCTTTCTCAGTGGGTGTGGGAGTGAAAATGTACTTTTGTTCTTCCACTTCCATCACATGTGGAAATCTTTAACATTTAATGATGTTAGATCACATTGCAAATCCTTCATTTGCTAGTGTTCAGCAACTCTCTTCATATCAATTGACATGGTGCTTCCGGAGGTGGAACCATAATCTCAAGTCTTGTATAGTTATAACCCATACCTACATCTGATCGTTAATATGTTAAGATTCTGGTTTCTCTCTATGAACAAGTGAATTTAGTGACCATATGTGTTTCATTTCTTGTTAGGATGCCATTTTCTCTTAAATGTTTATCGGGTTTCCCTGGTATTGATGCTTGGATAACCCCATTGAAACTTGACGTGATGACACAACATTTTGAGTAAGGAGAGGAACCATCCATTGTGTACTTGAGCTTCTAGTTATTGATTTAGGACAGCTTGTTAACAACAACCAAATGGTTTTGTATGAATTTTAAGTTGAGTGTGCGTTCAGTTGAATTTTACTCATTTCTGGGTTGGAACATACAATGCGTTGCAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCATTAGTAACATTGGGATATGAAAGTAGCTACGATGTATTCGTTAAAGCTGAAGGAGGTGGCCTCTCCGGCCAGGCTCAAGCAATTTCTCTCGGCATTGCTCGTGCTCTGCTAAAGGTGAGTGACGATCATAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCCCAATTCTCCAAGCGTTGAGGTTCCAACTCTTGTCAATTTTCCTCACGAATTGTTTTCCATAGCCTCCTTTCCTACATTAATTGTACAACCCAGATGTTATCTTGTATCTTCTTTCCTCTCTAATGTAGTGTTATCTTAAATGTTTTCTCCATATGAAATCTGAGCAGGAGCGAGGATATGTATTAAGTAGTCGATCCTTAATTGATCATGATAATTTTTTTTAAACTTATTTTTTGTCCATATAATTTGACTTTAGGATCTTCGTTCTGTTGTGATTTAGTGCAGAGAACTTGATTACTTTGATGTTATCTTGTTACATTTTATTTTAACATGCTCTGTCATAATCGATTCG

mRNA sequence

GCATCCACTGCAGTTTCAATTTCGCGAAGAAACCACCTCCATTCTGGATAGAGCTCGAAAATGGCTACTTCTATATCCTCTCTCGCATTTTCTCTTTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGAAGCCAAATGCCCTGTCCTTTCCCCGCTCAAAATCTCTTGTAATTTCCCATACGGGCACCAATTCCCCACTTGTGGTATCTGCCTCCGCCGCTGCCGGGGTTGAGACGGCGGAACTTAGGAACTTCGTGAAATCGAGGCTCCCTGGTGGCTTTGCCGCGCAAACGCTGATCGGCACTGGTCGCCGGAAATCTGCCGTTGCTCGTGTTGTCCTAAAAGAAGGCACTGGCAAAGTTATTATCAATTACCGCGATGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCATTAGTAACATTGGGATATGAAAGTAGCTACGATGTATTCGTTAAAGCTGAAGGAGGTGGCCTCTCCGGCCAGGCTCAAGCAATTTCTCTCGGCATTGCTCGTGCTCTGCTAAAGGTGAGTGACGATCATAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCCCAATTCTCCAAGCGTTGAGGTTCCAACTCTTGTCAATTTTCCTCACGAATTGTTTTCCATAGCCTCCTTTCCTACATTAATTGTACAACCCAGATGTTATCTTGTATCTTCTTTCCTCTCTAATGTAGTGTTATCTTAAATGTTTTCTCCATATGAAATCTGAGCAGGAGCGAGGATATGTATTAAGTAGTCGATCCTTAATTGATCATGATAATTTTTTTTAAACTTATTTTTTGTCCATATAATTTGACTTTAGGATCTTCGTTCTGTTGTGATTTAGTGCAGAGAACTTGATTACTTTGATGTTATCTTGTTACATTTTATTTTAACATGCTCTGTCATAATCGATTCG

Coding sequence (CDS)

ATGGCTACTTCTATATCCTCTCTCGCATTTTCTCTTTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGAAGCCAAATGCCCTGTCCTTTCCCCGCTCAAAATCTCTTGTAATTTCCCATACGGGCACCAATTCCCCACTTGTGGTATCTGCCTCCGCCGCTGCCGGGGTTGAGACGGCGGAACTTAGGAACTTCGTGAAATCGAGGCTCCCTGGTGGCTTTGCCGCGCAAACGCTGATCGGCACTGGTCGCCGGAAATCTGCCGTTGCTCGTGTTGTCCTAAAAGAAGGCACTGGCAAAGTTATTATCAATTACCGCGATGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCATTAGTAACATTGGGATATGAAAGTAGCTACGATGTATTCGTTAAAGCTGAAGGAGGTGGCCTCTCCGGCCAGGCTCAAGCAATTTCTCTCGGCATTGCTCGTGCTCTGCTAAAGGTGAGTGACGATCATAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCCCAATTCTCCAAGCGTTGA

Protein sequence

MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETAELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR
Homology
[Close]
BLAST of Lcy12g020440 vs. ExPASy Swiss-Prot
Match: Q9XJ27 (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 PE=2 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.0e-76
Identity = 157/206 (76.21%), Postives = 181/206 (87.86%), Query Frame = 0 

Query: 4   SISSLAFSLSSLSFSSQVSQKPNALSFPRSKSL--VISHTGTNSPLVVSASAAA---GVE 63
           SI++LA SLSSLSFSSQVSQ+PN +SFPR+ S+  + + +   + L ++A+ +A     E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TAELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLW 123
             EL+ +VKSRLPGGFAAQ +IGTGRRK A+ARVVL+EGTGKVIINYRDAKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLL 183
           LQYVKVPLVTLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVS DHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDSRVVERKKAGLKKARKAPQFSKR 205
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

[Close]
BLAST of Lcy12g020440 vs. ExPASy Swiss-Prot
Match: P82278 (30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE=1 SV=2)

HSP 1 Score: 279.6 bits (714), Expect = 2.7e-74
Identity = 151/208 (72.60%), Postives = 172/208 (82.69%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAG---- 60
           MA SISSL  S +SLSF+S ++ KP  L   R+K   +S+     PLV++A++A      
Sbjct: 1   MAVSISSLTSSFASLSFTSNLTPKPQTLPMARTKPFSLSNPAVVKPLVITATSATAPVEV 60

Query: 61  VETAELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNP 120
            ETA+L  FVKSRLPGGFAAQT+IGTGRRK A+ARVVL+EGTGK IINYRDAKEYLQGNP
Sbjct: 61  AETADLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNP 120

Query: 121 LWLQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEG 180
           LWLQYVK PL TLGYE++YDVFVKA GGGLSGQAQAISLG+ARALLKVS  HR+PLK+EG
Sbjct: 121 LWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEG 180

Query: 181 LLTRDSRVVERKKAGLKKARKAPQFSKR 205
           LLTRDSR+VERKK GLKKARKAPQFSKR
Sbjct: 181 LLTRDSRIVERKKPGLKKARKAPQFSKR 208

[Close]
BLAST of Lcy12g020440 vs. ExPASy Swiss-Prot
Match: Q8DMK7 (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpsI PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 8.6e-36
Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = 0 

Query: 80  IGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFV 139
           +GTGRRKSAVARV L  G+G++ IN R+  +YLQ NP++L  VK PL TLG E+SYD++V
Sbjct: 13  LGTGRRKSAVARVRLIPGSGQLWINGRNGADYLQNNPIYLNLVKAPLETLGLENSYDIYV 72

Query: 140 KAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAP 199
            A GGGL+GQA AI LGIARAL ++  ++R PLK EG LTRD R  ER+K GL+KARKAP
Sbjct: 73  NATGGGLTGQADAIRLGIARALCQLDIENRKPLKTEGYLTRDPRAKERRKYGLRKARKAP 132

Query: 200 QFSKR 205
           Q+SKR
Sbjct: 133 QYSKR 137

[Close]
BLAST of Lcy12g020440 vs. ExPASy Swiss-Prot
Match: Q9MUV1 (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.1e-35
Identity = 83/125 (66.40%), Postives = 94/125 (75.20%), Query Frame = 0 

Query: 80  IGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFV 139
           +GTGRRKSAVARV L  G G+VIIN      YLQ N  +L  V+ PL TLG E +YD+ V
Sbjct: 13  LGTGRRKSAVARVRLVPGNGEVIINGLPGTNYLQFNGSYLSAVRSPLETLGLEDNYDIIV 72

Query: 140 KAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAP 199
           KA GGGL+GQA+AI LG+ARAL  +   +R PLKKEG LTRDSRV ERKK GLKKARKAP
Sbjct: 73  KAVGGGLTGQAEAIRLGVARALCTIDTSNRHPLKKEGFLTRDSRVKERKKYGLKKARKAP 132

Query: 200 QFSKR 205
           QFSKR
Sbjct: 133 QFSKR 137

[Close]
BLAST of Lcy12g020440 vs. ExPASy Swiss-Prot
Match: B2ITM7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpsI PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.1e-34
Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = 0 

Query: 81  GTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYESSYDVFVK 140
           GTGRRK+AVARV L  GTG++ +N +D   Y Q NP +L  +K PL TLG E+ YD+ VK
Sbjct: 15  GTGRRKNAVARVRLVPGTGQLTVNGKDGNLYFQFNPNYLGVIKAPLETLGLENEYDILVK 74

Query: 141 AEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQ 200
           AEGGGL+GQA ++ LG+ARAL ++  D+R PLK EG LTRD R  ERKK GL KARKAPQ
Sbjct: 75  AEGGGLTGQADSVRLGVARALCQLDPDNRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQ 134

Query: 201 FSKR 205
           +SKR
Sbjct: 135 YSKR 138

[Close]
BLAST of Lcy12g020440 vs. ExPASy TrEMBL
Match: A0A6J1CNY0 (30S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013001 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.5e-94
Identity = 191/204 (93.63%), Postives = 199/204 (97.55%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MA+SISSLAFSLSSLSFSSQ+SQKPN LSFPRSKSLVISH   +SPLVVSASAA GVETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELR+FVKSRLPGGFAAQTLIGTGRRKSA+ARVV++EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Lcy12g020440 vs. ExPASy TrEMBL
Match: A0A6J1FS60 (30S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446382 PE=3 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.7e-93
Identity = 190/204 (93.14%), Postives = 198/204 (97.06%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATS+SSLAFSLSSLSFSSQVSQ PN+LSFPRSKSLVISH  +NSPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+N+VKSRLPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Lcy12g020440 vs. ExPASy TrEMBL
Match: A0A6J1J3K2 (30S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481030 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.7e-93
Identity = 190/204 (93.14%), Postives = 198/204 (97.06%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATS+SSLAFSLSSLSFSSQVSQ PNALSFPRSKSLVISH+ +NSPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+N+VKSRLPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Lcy12g020440 vs. ExPASy TrEMBL
Match: A0A5A7UBW5 (30S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00010 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.2e-92
Identity = 189/204 (92.65%), Postives = 197/204 (96.57%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATSISSLAFSLSSLSFSSQVS KP ALSFPRSKSL+IS + + SPL+VSASAAA VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +L++FVKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Lcy12g020440 vs. ExPASy TrEMBL
Match: A0A1S3CRR0 (30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.2e-92
Identity = 189/204 (92.65%), Postives = 197/204 (96.57%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATSISSLAFSLSSLSFSSQVS KP ALSFPRSKSL+IS + + SPL+VSASAAA VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +L++FVKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Lcy12g020440 vs. NCBI nr
Match: XP_038903352.1 (30S ribosomal protein S9, chloroplastic [Benincasa hispida])

HSP 1 Score: 354.8 bits (909), Expect = 5.1e-94
Identity = 192/204 (94.12%), Postives = 198/204 (97.06%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATS+SSLAFSLSSLSFSSQVS KPNALSFPRSKSL ISH  + +PLVVSASAAAGVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSHKPNALSFPRSKSLQISHASSTTPLVVSASAAAGVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LR+FVKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLRSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Lcy12g020440 vs. NCBI nr
Match: XP_022143016.1 (30S ribosomal protein S9, chloroplastic [Momordica charantia])

HSP 1 Score: 354.8 bits (909), Expect = 5.1e-94
Identity = 191/204 (93.63%), Postives = 199/204 (97.55%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MA+SISSLAFSLSSLSFSSQ+SQKPN LSFPRSKSLVISH   +SPLVVSASAA GVETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLWLQ 120
           ELR+FVKSRLPGGFAAQTLIGTGRRKSA+ARVV++EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Lcy12g020440 vs. NCBI nr
Match: XP_022940950.1 (30S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S ribosomal protein S9, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037838.1 30S ribosomal protein S9, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 351.3 bits (900), Expect = 5.7e-93
Identity = 190/204 (93.14%), Postives = 198/204 (97.06%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATS+SSLAFSLSSLSFSSQVSQ PN+LSFPRSKSLVISH  +NSPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+N+VKSRLPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Lcy12g020440 vs. NCBI nr
Match: XP_022982074.1 (30S ribosomal protein S9, chloroplastic [Cucurbita maxima])

HSP 1 Score: 350.5 bits (898), Expect = 9.7e-93
Identity = 190/204 (93.14%), Postives = 198/204 (97.06%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATS+SSLAFSLSSLSFSSQVSQ PNALSFPRSKSLVISH+ +NSPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+N+VKSRLPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Lcy12g020440 vs. NCBI nr
Match: XP_023523256.1 (30S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 189/204 (92.65%), Postives = 198/204 (97.06%), Query Frame = 0 

Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATS+SSLAFSLSSLSFSSQ+SQ PNALSFPRSKSLVISH  +NSPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQLSQMPNALSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLWLQ 120
           EL+N+VKSRLPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKVPL+TLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of Lcy12g020440 vs. TAIR 10
Match: AT1G74970.1 (ribosomal protein S9 )

HSP 1 Score: 287.7 bits (735), Expect = 7.2e-78
Identity = 157/206 (76.21%), Postives = 181/206 (87.86%), Query Frame = 0 

Query: 4   SISSLAFSLSSLSFSSQVSQKPNALSFPRSKSL--VISHTGTNSPLVVSASAAA---GVE 63
           SI++LA SLSSLSFSSQVSQ+PN +SFPR+ S+  + + +   + L ++A+ +A     E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TAELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEYLQGNPLW 123
             EL+ +VKSRLPGGFAAQ +IGTGRRK A+ARVVL+EGTGKVIINYRDAKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLL 183
           LQYVKVPLVTLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVS DHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDSRVVERKKAGLKKARKAPQFSKR 205
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

[Close]
BLAST of Lcy12g020440 vs. TAIR 10
Match: AT3G49080.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 7.1e-17
Identity = 59/153 (38.56%), Postives = 82/153 (53.59%), Query Frame = 0 

Query: 52  SAAAGVETAELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKEY 111
           S+ A +E     +  K+R+          GTGRRK ++ARV ++ G GK  +N ++   Y
Sbjct: 279 SSRAEIELQMQEDIAKARVRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVNEKEFDVY 338

Query: 112 LQGNPLWLQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSP 171
                     ++ PL        +D+    +GGG +GQ  AI LGI+RAL     D R+ 
Sbjct: 339 FPMLDHRAALLR-PLAETKTLGRWDIKCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTS 398

Query: 172 LKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR 205
           L+  G LTRDSRVVERKK G  KARK+ Q+ KR
Sbjct: 399 LRAAGFLTRDSRVVERKKPGKAKARKSFQWVKR 430

The following BLAST results are available for this feature:
BLAST of Lcy12g020440 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9XJ271.0e-7676.2130S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 ... [more]
P822782.7e-7472.6030S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE... [more]
Q8DMK78.6e-3663.2030S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722... [more]
Q9MUV11.1e-3566.4030S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE... [more]
B2ITM72.1e-3461.2930S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) O... [more]
BLAST of Lcy12g020440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CNY02.5e-9493.6330S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A6J1FS602.7e-9393.1430S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1J3K24.7e-9393.1430S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481... [more]
A0A5A7UBW55.2e-9292.6530S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3CRR05.2e-9292.6530S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 ... [more]
BLAST of Lcy12g020440 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038903352.15.1e-9494.1230S ribosomal protein S9, chloroplastic [Benincasa hispida][more]
XP_022143016.15.1e-9493.6330S ribosomal protein S9, chloroplastic [Momordica charantia][more]
XP_022940950.15.7e-9393.1430S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S r... [more]
XP_022982074.19.7e-9393.1430S ribosomal protein S9, chloroplastic [Cucurbita maxima][more]
XP_023523256.11.3e-9292.6530S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo][more]
BLAST of Lcy12g020440 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G74970.17.2e-7876.21ribosomal protein S9 [more]
AT3G49080.17.1e-1738.56Ribosomal protein S5 domain 2-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000754Ribosomal protein S9PFAMPF00380Ribosomal_S9coord: 83..204
e-value: 5.7E-42
score: 143.0
IPR000754Ribosomal protein S9PANTHERPTHR21569RIBOSOMAL PROTEIN S9coord: 60..204
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 70..204
e-value: 7.9E-50
score: 170.5
NoneNo IPR availablePANTHERPTHR21569:SF128S RIBOSOMAL PROTEIN S9, MITOCHONDRIALcoord: 60..204
IPR020574Ribosomal protein S9, conserved sitePROSITEPS00360RIBOSOMAL_S9coord: 143..161
IPR023035Ribosomal protein S9, bacterial/plastidHAMAPMF_00532_BRibosomal_S9_Bcoord: 74..204
score: 32.588203
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 78..204

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy12g020440.1Lcy12g020440.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0000312 plastid small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome