Lcy12g020140 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g020140
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	transcription factor MYB44-like
Location	Chr12: 47326416 .. 47327297 (+)
RNA-Seq Expression	Lcy12g020140
Synteny	Lcy12g020140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATTCCCCCAATGGACATTAATATTAATCATTCTTCTTCTTCCCCTTCCACCTCCGAATCCTCCTCCTCCGATTCCTCTCTCTCCGGCAAGCCCCCTCCGCGAAACTCCGCCGTCCCGGATAAAATCAAAGGCCCGTGGAGCGCCGAAGAGGACCGGGTCCTGACCCGACTCGTCGAGCGCTACGGCCCGAGAAACTGGTCTTTAATTAGTCGCTACGTAAAGGGCCGGTCTGGAAAATCCTGCCGGCTCCGCTGGTGCAACCAGCTCTGCCCCGGCGTCGAGCACCGCCCCTTCTCTCCCGCTGAGGATGACGCCATCATCGCCGCCCATTCCCGCTATGGCAACCGGTGGGCCACCATTGCCCGCCTCCTCCCCGGCCGGACCGACAATGCCGTCAAAAACCACTGGAACTCCACTCTCAAGCGCCGAGTTAGAGAGAACCGAAATTCCGCCGGTAACCACACTTCCGACGTCGGCGGTGGCGGTTCGGTAGTAGCAGTCGACGACGACCCGTTGACGGCGCTGACGCTCGCCACTCCGGGAATCGTTTCTGGAGGTGACGTGGCGCCGGGCTCCGAGCGCCGGAGCGAGAGTCTGCCGACCGGATTCTGGGAAGTGATGAGGGACGTTGTGGCCAGAGAAGTGAGGGAGTACATGACGACGACGTTTTCGGAAAACTCGGGATTTCAATAAATCTAAAGGGCTAATATGTAATTGTGTAATTTATGGATTTAATGTTCTCGTTAATTCTATATTGTTTGGGATTAATGAAAAAAGGGGAGGGATCAAAATTCGTGGCGGCCCTTCTGGGAAAAGTTGTGTGCGTCACAGCCTGTCATGAACGCAAACGGTCACCGTTTATTCTTTGGCTTCAGGCTT

mRNA sequence

CAAATTCCCCCAATGGACATTAATATTAATCATTCTTCTTCTTCCCCTTCCACCTCCGAATCCTCCTCCTCCGATTCCTCTCTCTCCGGCAAGCCCCCTCCGCGAAACTCCGCCGTCCCGGATAAAATCAAAGGCCCGTGGAGCGCCGAAGAGGACCGGGTCCTGACCCGACTCGTCGAGCGCTACGGCCCGAGAAACTGGTCTTTAATTAGTCGCTACGTAAAGGGCCGGTCTGGAAAATCCTGCCGGCTCCGCTGGTGCAACCAGCTCTGCCCCGGCGTCGAGCACCGCCCCTTCTCTCCCGCTGAGGATGACGCCATCATCGCCGCCCATTCCCGCTATGGCAACCGGTGGGCCACCATTGCCCGCCTCCTCCCCGGCCGGACCGACAATGCCGTCAAAAACCACTGGAACTCCACTCTCAAGCGCCGAGTTAGAGAGAACCGAAATTCCGCCGGTAACCACACTTCCGACGTCGGCGGTGGCGGTTCGGTAGTAGCAGTCGACGACGACCCGTTGACGGCGCTGACGCTCGCCACTCCGGGAATCGTTTCTGGAGGTGACGTGGCGCCGGGCTCCGAGCGCCGGAGCGAGAGTCTGCCGACCGGATTCTGGGAAGTGATGAGGGACGTTGTGGCCAGAGAAGTGAGGGAGTACATGACGACGACGTTTTCGGAAAACTCGGGATTTCAATAAATCTAAAGGGCTAATATGTAATTGTGTAATTTATGGATTTAATGTTCTCGTTAATTCTATATTGTTTGGGATTAATGAAAAAAGGGGAGGGATCAAAATTCGTGGCGGCCCTTCTGGGAAAAGTTGTGTGCGTCACAGCCTGTCATGAACGCAAACGGTCACCGTTTATTCTTTGGCTTCAGGCTT

Coding sequence (CDS)

ATGGACATTAATATTAATCATTCTTCTTCTTCCCCTTCCACCTCCGAATCCTCCTCCTCCGATTCCTCTCTCTCCGGCAAGCCCCCTCCGCGAAACTCCGCCGTCCCGGATAAAATCAAAGGCCCGTGGAGCGCCGAAGAGGACCGGGTCCTGACCCGACTCGTCGAGCGCTACGGCCCGAGAAACTGGTCTTTAATTAGTCGCTACGTAAAGGGCCGGTCTGGAAAATCCTGCCGGCTCCGCTGGTGCAACCAGCTCTGCCCCGGCGTCGAGCACCGCCCCTTCTCTCCCGCTGAGGATGACGCCATCATCGCCGCCCATTCCCGCTATGGCAACCGGTGGGCCACCATTGCCCGCCTCCTCCCCGGCCGGACCGACAATGCCGTCAAAAACCACTGGAACTCCACTCTCAAGCGCCGAGTTAGAGAGAACCGAAATTCCGCCGGTAACCACACTTCCGACGTCGGCGGTGGCGGTTCGGTAGTAGCAGTCGACGACGACCCGTTGACGGCGCTGACGCTCGCCACTCCGGGAATCGTTTCTGGAGGTGACGTGGCGCCGGGCTCCGAGCGCCGGAGCGAGAGTCTGCCGACCGGATTCTGGGAAGTGATGAGGGACGTTGTGGCCAGAGAAGTGAGGGAGTACATGACGACGACGTTTTCGGAAAACTCGGGATTTCAATAA

Protein sequence

MDININHSSSSPSTSESSSSDSSLSGKPPPRNSAVPDKIKGPWSAEEDRVLTRLVERYGPRNWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLPGRTDNAVKNHWNSTLKRRVRENRNSAGNHTSDVGGGGSVVAVDDDPLTALTLATPGIVSGGDVAPGSERRSESLPTGFWEVMRDVVAREVREYMTTTFSENSGFQ

Homology

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BLAST of Lcy12g020140 vs. ExPASy Swiss-Prot
Match: O23160 (Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 6.6e-45
Identity = 94/180 (52.22%), Postives = 119/180 (66.11%), Query Frame = 0


Query: 37  DKIKGPWSAEEDRVLTRLVERYGPRNWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFS 96
           ++IKGPWS EED +L RLV+++GPRNWSLIS+ + GRSGKSCRLRWCNQL P VEHR FS
Sbjct: 10  ERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRAFS 69

Query: 97  PAEDDAIIAAHSRYGNRWATIARLLPGRTDNAVKNHWNSTLKRRVRENRNSAGNHTSDVG 156
             ED+ II AH+R+GN+WATI+RLL GRTDNA+KNHWNSTLKR+      S    + D G
Sbjct: 70  QEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKC-----SVEGQSCDFG 129

Query: 157 GGGSVVA--VDDDPLTALTLATPGIVSGGDVAPGSERRSE--SLPTGFWEVMRDVVAREV 213
           G G       ++ PL        G+ +G  ++PGS   S+     +G   V +  V  EV
Sbjct: 130 GNGGYDGNLGEEQPLKRTASGGGGVSTGLYMSPGSPSGSDVSEQSSGGAHVFKPTVRSEV 184

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BLAST of Lcy12g020140 vs. ExPASy Swiss-Prot
Match: Q9SN12 (Transcription factor MYB77 OS=Arabidopsis thaliana OX=3702 GN=MYB77 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 7.3e-44
Identity = 77/104 (74.04%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 37  DKIKGPWSAEEDRVLTRLVERYGPRNWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFS 96
           D++KGPWS EED  L R+VE+YGPRNWS IS+ + GRSGKSCRLRWCNQL P VEHRPFS
Sbjct: 3   DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query: 97  PAEDDAIIAAHSRYGNRWATIARLLPGRTDNAVKNHWNSTLKRR 141
           P ED+ I+ A +++GN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct: 63  PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

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BLAST of Lcy12g020140 vs. ExPASy Swiss-Prot
Match: Q9FDW1 (Transcription factor MYB44 OS=Arabidopsis thaliana OX=3702 GN=MYB44 PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.1e-43
Identity = 86/153 (56.21%), Postives = 106/153 (69.28%), Query Frame = 0


Query: 37  DKIKGPWSAEEDRVLTRLVERYGPRNWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFS 96
           D+IKGPWS EED  L RLV +YGPRNW++IS+ + GRSGKSCRLRWCNQL P VEHRPFS
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 97  PAEDDAIIAAHSRYGNRWATIARLLPGRTDNAVKNHWNSTLKRRVRENRNSAGNHTSDVG 156
             ED+ I  AH+++GN+WATIARLL GRTDNAVKNHWNSTLKR+     +   + + D  
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSEDHR 122

Query: 157 GGGSVVAVDDDPLTALTLATPGIVSGGDVAPGS 190
                V+    P+      +PG  +G DV+  S
Sbjct: 123 PVKRSVSAGSPPVVTGLYMSPGSPTGSDVSDSS 155

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BLAST of Lcy12g020140 vs. ExPASy Swiss-Prot
Match: Q42575 (Transcription factor MYB1 OS=Arabidopsis thaliana OX=3702 GN=MYB1 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 6.0e-38
Identity = 81/150 (54.00%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 37  DKIKGPWSAEEDRVLTRLVERYGPRNWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFS 96
           D++KGPWS EED VL+ LV+R G RNWS I+R + GRSGKSCRLRWCNQL P +    F+
Sbjct: 52  DRVKGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNSFT 111

Query: 97  PAEDDAIIAAHSRYGNRWATIARLLPGRTDNAVKNHWNSTLKRRVRENRNSAGNHTSDVG 156
             ED AIIAAH+ +GN+WA IA+LLPGRTDNA+KNHWNS L+RR  +   +      ++G
Sbjct: 112 EVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRRFIDFEKA-----KNIG 171

Query: 157 GGGSVVAVDD---DPLTALTLATPGIVSGG 184
            G  V  VDD   D  T +  +   + SGG
Sbjct: 172 TGSLV--VDDSGFDRTTTVASSEETLSSGG 194

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BLAST of Lcy12g020140 vs. ExPASy Swiss-Prot
Match: O04192 (Transcription factor MYB25 OS=Arabidopsis thaliana OX=3702 GN=MYB25 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-34
Identity = 73/140 (52.14%), Postives = 96/140 (68.57%), Query Frame = 0


Query: 4   NINHSSSSPSTSESSSSDSSLSGKPPPRNSAVPDKIKGPWSAEEDRVLTRLVERYGPRNW 63
           N  H +     +E + SD++  GK          K+KGPW  E+D  LTRLV+  GPRNW
Sbjct: 23  NAIHKAVEAELAELAKSDANGGGK---------SKVKGPWLPEQDEALTRLVKMCGPRNW 82

Query: 64  SLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLPG 123
           +LISR + GRSGKSCRLRWCNQL P ++ +PFS  E+  I++A +  GN+W+ IA+LLPG
Sbjct: 83  NLISRGIPGRSGKSCRLRWCNQLDPILKRKPFSDEEEHMIMSAQAVLGNKWSVIAKLLPG 142

Query: 124 RTDNAVKNHWNSTLKRRVRE 144
           RTDNA+KNHWNS L+R+  E
Sbjct: 143 RTDNAIKNHWNSNLRRKPAE 153

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BLAST of Lcy12g020140 vs. ExPASy TrEMBL
Match: A0A5A7V9U0 (Transcriptional activator Myb-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003670 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.2e-107
Identity = 198/226 (87.61%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 3   ININHSSSSPSTSESSSSDSSLSGKPPPRNSAVPDKIKGPWSAEEDRVLTRLVERYGPRN 62
           +NI++ SSSPSTSESSSSDSSLSGKPPP+ S +PDKIKGPWSAEEDRVLTRLVERYGPRN
Sbjct: 1   MNIHNFSSSPSTSESSSSDSSLSGKPPPQTSPIPDKIKGPWSAEEDRVLTRLVERYGPRN 60

Query: 63  WSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLP 122
           WSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLP
Sbjct: 61  WSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLP 120

Query: 123 GRTDNAVKNHWNSTLKRRVREN-RNSAGNHTSDVGGGGSVVAVDDDPLTALTLATPGIVS 182
           GRTDNAVKNHWNSTLKRRV+++ RNS+ NHTSDVGG GS +AVDDDPLTALTLATPGIV 
Sbjct: 121 GRTDNAVKNHWNSTLKRRVKDDRRNSSSNHTSDVGGSGSFLAVDDDPLTALTLATPGIVG 180

Query: 183 GGDVAPGSERRSESLPTGFWEVMRDVVAREVREYMTTTFSENSGFQ 228
           GG+V   ++R SESLPTGFWEVM+DVVAREVREYMTTTFSEN GF+
Sbjct: 181 GGEVVRETDRVSESLPTGFWEVMKDVVAREVREYMTTTFSENPGFR 226

[Close]

BLAST of Lcy12g020140 vs. ExPASy TrEMBL
Match: A0A1S3BV53 (transcriptional activator Myb-like OS=Cucumis melo OX=3656 GN=LOC103493514 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.2e-107
Identity = 198/226 (87.61%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 3   ININHSSSSPSTSESSSSDSSLSGKPPPRNSAVPDKIKGPWSAEEDRVLTRLVERYGPRN 62
           +NI++ SSSPSTSESSSSDSSLSGKPPP+ S +PDKIKGPWSAEEDRVLTRLVERYGPRN
Sbjct: 1   MNIHNFSSSPSTSESSSSDSSLSGKPPPQTSPIPDKIKGPWSAEEDRVLTRLVERYGPRN 60

Query: 63  WSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLP 122
           WSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLP
Sbjct: 61  WSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLP 120

Query: 123 GRTDNAVKNHWNSTLKRRVREN-RNSAGNHTSDVGGGGSVVAVDDDPLTALTLATPGIVS 182
           GRTDNAVKNHWNSTLKRRV+++ RNS+ NHTSDVGG GS +AVDDDPLTALTLATPGIV 
Sbjct: 121 GRTDNAVKNHWNSTLKRRVKDDRRNSSSNHTSDVGGSGSFLAVDDDPLTALTLATPGIVG 180

Query: 183 GGDVAPGSERRSESLPTGFWEVMRDVVAREVREYMTTTFSENSGFQ 228
           GG+V   ++R SESLPTGFWEVM+DVVAREVREYMTTTFSEN GF+
Sbjct: 181 GGEVVRETDRVSESLPTGFWEVMKDVVAREVREYMTTTFSENPGFR 226

[Close]

BLAST of Lcy12g020140 vs. ExPASy TrEMBL
Match: A0A6J1J4G1 (transcription factor MYB44-like OS=Cucurbita maxima OX=3661 GN=LOC111481160 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.9e-105
Identity = 197/226 (87.17%), Postives = 209/226 (92.48%), Query Frame = 0


Query: 3   ININHSSSSPSTSESSSSDSSLSGK-PPPRNSAVPDKIKGPWSAEEDRVLTRLVERYGPR 62
           ++I+HSSSSPSTSESSS DSSLSGK  P RNS   DKIKGPWSAEEDRVLTRLVERYGPR
Sbjct: 1   MSIHHSSSSPSTSESSSDDSSLSGKLQPSRNSGDADKIKGPWSAEEDRVLTRLVERYGPR 60

Query: 63  NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLL 122
           NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAED+AIIAAHSRYGNRWATIARLL
Sbjct: 61  NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDEAIIAAHSRYGNRWATIARLL 120

Query: 123 PGRTDNAVKNHWNSTLKRRVRENRNSAGNHTSDVGGGGSVVAVDDDPLTALTLATPGIVS 182
           PGRTDNAVKNHWNSTLKRRVR+   SA +H+SD+ GGGS+VAVDDDPLTALTLATPGIV+
Sbjct: 121 PGRTDNAVKNHWNSTLKRRVRDQGKSAVDHSSDIVGGGSLVAVDDDPLTALTLATPGIVA 180

Query: 183 GGDVAPGSERRSESLPTGFWEVMRDVVAREVREYMTTTFSENSGFQ 228
           GGDVA  S RRSESLP+GFWE MRDVVAREVREYMTTTFSEN GF+
Sbjct: 181 GGDVAAASNRRSESLPSGFWEAMRDVVAREVREYMTTTFSENRGFE 226

[Close]

BLAST of Lcy12g020140 vs. ExPASy TrEMBL
Match: A0A6J1FM32 (transcription factor MYB44-like OS=Cucurbita moschata OX=3662 GN=LOC111446453 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 8.6e-104
Identity = 197/224 (87.95%), Postives = 206/224 (91.96%), Query Frame = 0


Query: 3   ININHSSSSPSTSESSSSDSSLSGK-PPPRNSAVPDKIKGPWSAEEDRVLTRLVERYGPR 62
           ++I+HSSSSPSTSESSS DSSLSGK  P RNS   DKIKGPWSAEEDRVLTRLVERYGPR
Sbjct: 1   MSIHHSSSSPSTSESSSDDSSLSGKLQPSRNSGDADKIKGPWSAEEDRVLTRLVERYGPR 60

Query: 63  NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLL 122
           NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLL
Sbjct: 61  NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLL 120

Query: 123 PGRTDNAVKNHWNSTLKRRVRENRNSAGNHTSDVGGGGSVVAVDDDPLTALTLATPGIVS 182
           PGRTDNAVKNHWNSTLKRRVR+ R SA +H+SDV  GGS+VAVDDDPLTALTLATPGIV+
Sbjct: 121 PGRTDNAVKNHWNSTLKRRVRDQRKSAVDHSSDVVVGGSLVAVDDDPLTALTLATPGIVA 180

Query: 183 GGDVAPGSERRSESLPTGFWEVMRDVVAREVREYMTTTFSENSG 226
           GGD A  S RRSESLP+GFWE MRDVVAREVREYMTTTFSE SG
Sbjct: 181 GGDAAAASNRRSESLPSGFWEAMRDVVAREVREYMTTTFSEKSG 224

[Close]

BLAST of Lcy12g020140 vs. ExPASy TrEMBL
Match: A0A0A0L4S7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G638510 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 1.1e-103
Identity = 196/228 (85.96%), Postives = 211/228 (92.54%), Query Frame = 0


Query: 3   ININHSSSSPSTSESSSSDSSLSGKPPPRNSAVPDKIKGPWSAEEDRVLTRLVERYGPRN 62
           +NI++ SSS STSESSSSDSSLSGKPPP +S +PDKIKGPWSAEEDR+LTRLVERYGPRN
Sbjct: 1   MNIHNFSSSTSTSESSSSDSSLSGKPPPSSSPIPDKIKGPWSAEEDRILTRLVERYGPRN 60

Query: 63  WSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLP 122
           WSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAI+AAHSRYGNRWATIARLLP
Sbjct: 61  WSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIVAAHSRYGNRWATIARLLP 120

Query: 123 GRTDNAVKNHWNSTLKRRVREN-RNSAGNHTSD-VGGGGSVVAVDDDPLTALTLATPGIV 182
           GRTDNAVKNHWNSTLKRRVR++ RNS+ NHTSD VGGGGS +AVDDDPLTALTLATPG V
Sbjct: 121 GRTDNAVKNHWNSTLKRRVRDDRRNSSSNHTSDVVGGGGSFLAVDDDPLTALTLATPGNV 180

Query: 183 --SGGDVAPGSERRSESLPTGFWEVMRDVVAREVREYMTTTFSENSGF 227
              GG+V   S+RRSE+LP GFWEVM+DVVAREVREYMTTTFSEN GF
Sbjct: 181 GGGGGEVVRESDRRSENLPAGFWEVMKDVVAREVREYMTTTFSENRGF 228

[Close]

BLAST of Lcy12g020140 vs. NCBI nr
Match: XP_038899055.1 (transcription factor MYB44-like [Benincasa hispida])

HSP 1 Score: 408.3 bits (1048), Expect = 4.3e-110
Identity = 201/224 (89.73%), Postives = 214/224 (95.54%), Query Frame = 0


Query: 4   NINHSSSSPSTSESSSSDSSLSGKPPPRNSAVPDKIKGPWSAEEDRVLTRLVERYGPRNW 63
           NI++ SSSPSTSESSSSDSSLSGKPPP NS+VPDKIKGPWSAEEDRVLTRLVERYGPRNW
Sbjct: 3   NIHNFSSSPSTSESSSSDSSLSGKPPPPNSSVPDKIKGPWSAEEDRVLTRLVERYGPRNW 62

Query: 64  SLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLPG 123
           SLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLPG
Sbjct: 63  SLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLPG 122

Query: 124 RTDNAVKNHWNSTLKRRVRENRNSAGNHTSDVGGGGSVVAVDDDPLTALTLATPGIVSGG 183
           RTDNAVKNHWNSTLKRRVR++RNSAGNHTSD   GGS +AV+DDPLTALTLATPG+V+GG
Sbjct: 123 RTDNAVKNHWNSTLKRRVRDDRNSAGNHTSDAAAGGSFLAVNDDPLTALTLATPGMVAGG 182

Query: 184 DVAPGSERRSESLPTGFWEVMRDVVAREVREYMTTTFSENSGFQ 228
           +V P S+RRSESLP GFWEVM+DVVAREVREYMTTTFSEN GF+
Sbjct: 183 EVVPESDRRSESLPAGFWEVMKDVVAREVREYMTTTFSENPGFR 226

[Close]

BLAST of Lcy12g020140 vs. NCBI nr
Match: XP_008452503.1 (PREDICTED: transcriptional activator Myb-like [Cucumis melo] >KAA0064358.1 transcriptional activator Myb-like [Cucumis melo var. makuwa] >TYK20229.1 transcriptional activator Myb-like [Cucumis melo var. makuwa])

HSP 1 Score: 398.3 bits (1022), Expect = 4.5e-107
Identity = 198/226 (87.61%), Postives = 213/226 (94.25%), Query Frame = 0


Query: 3   ININHSSSSPSTSESSSSDSSLSGKPPPRNSAVPDKIKGPWSAEEDRVLTRLVERYGPRN 62
           +NI++ SSSPSTSESSSSDSSLSGKPPP+ S +PDKIKGPWSAEEDRVLTRLVERYGPRN
Sbjct: 1   MNIHNFSSSPSTSESSSSDSSLSGKPPPQTSPIPDKIKGPWSAEEDRVLTRLVERYGPRN 60

Query: 63  WSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLP 122
           WSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLP
Sbjct: 61  WSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLP 120

Query: 123 GRTDNAVKNHWNSTLKRRVREN-RNSAGNHTSDVGGGGSVVAVDDDPLTALTLATPGIVS 182
           GRTDNAVKNHWNSTLKRRV+++ RNS+ NHTSDVGG GS +AVDDDPLTALTLATPGIV 
Sbjct: 121 GRTDNAVKNHWNSTLKRRVKDDRRNSSSNHTSDVGGSGSFLAVDDDPLTALTLATPGIVG 180

Query: 183 GGDVAPGSERRSESLPTGFWEVMRDVVAREVREYMTTTFSENSGFQ 228
           GG+V   ++R SESLPTGFWEVM+DVVAREVREYMTTTFSEN GF+
Sbjct: 181 GGEVVRETDRVSESLPTGFWEVMKDVVAREVREYMTTTFSENPGFR 226

[Close]

BLAST of Lcy12g020140 vs. NCBI nr
Match: XP_022982283.1 (transcription factor MYB44-like [Cucurbita maxima])

HSP 1 Score: 390.2 bits (1001), Expect = 1.2e-104
Identity = 197/226 (87.17%), Postives = 209/226 (92.48%), Query Frame = 0


Query: 3   ININHSSSSPSTSESSSSDSSLSGK-PPPRNSAVPDKIKGPWSAEEDRVLTRLVERYGPR 62
           ++I+HSSSSPSTSESSS DSSLSGK  P RNS   DKIKGPWSAEEDRVLTRLVERYGPR
Sbjct: 1   MSIHHSSSSPSTSESSSDDSSLSGKLQPSRNSGDADKIKGPWSAEEDRVLTRLVERYGPR 60

Query: 63  NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLL 122
           NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAED+AIIAAHSRYGNRWATIARLL
Sbjct: 61  NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDEAIIAAHSRYGNRWATIARLL 120

Query: 123 PGRTDNAVKNHWNSTLKRRVRENRNSAGNHTSDVGGGGSVVAVDDDPLTALTLATPGIVS 182
           PGRTDNAVKNHWNSTLKRRVR+   SA +H+SD+ GGGS+VAVDDDPLTALTLATPGIV+
Sbjct: 121 PGRTDNAVKNHWNSTLKRRVRDQGKSAVDHSSDIVGGGSLVAVDDDPLTALTLATPGIVA 180

Query: 183 GGDVAPGSERRSESLPTGFWEVMRDVVAREVREYMTTTFSENSGFQ 228
           GGDVA  S RRSESLP+GFWE MRDVVAREVREYMTTTFSEN GF+
Sbjct: 181 GGDVAAASNRRSESLPSGFWEAMRDVVAREVREYMTTTFSENRGFE 226

[Close]

BLAST of Lcy12g020140 vs. NCBI nr
Match: KAG6608498.1 (Transcription factor MYB44, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037824.1 Transcription factor MYB44, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 386.7 bits (992), Expect = 1.4e-103
Identity = 197/224 (87.95%), Postives = 207/224 (92.41%), Query Frame = 0


Query: 3   ININHSSSSPSTSESSSSDSSLSGK-PPPRNSAVPDKIKGPWSAEEDRVLTRLVERYGPR 62
           ++I+HSSSSPSTSESSS DSSLSGK  P RNS   DKIKGPWSAEEDRVLTRLVERYGPR
Sbjct: 1   MSIHHSSSSPSTSESSSDDSSLSGKLQPSRNSGDADKIKGPWSAEEDRVLTRLVERYGPR 60

Query: 63  NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLL 122
           NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLL
Sbjct: 61  NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLL 120

Query: 123 PGRTDNAVKNHWNSTLKRRVRENRNSAGNHTSDVGGGGSVVAVDDDPLTALTLATPGIVS 182
           PGRTDNAVKNHWNSTLKRRVR+ R SA +H+SDV  GGS+VAVDDDPLTALTLATPGIV+
Sbjct: 121 PGRTDNAVKNHWNSTLKRRVRDQRKSAVDHSSDVVVGGSLVAVDDDPLTALTLATPGIVA 180

Query: 183 GGDVAPGSERRSESLPTGFWEVMRDVVAREVREYMTTTFSENSG 226
           GGDVA  S RRSESLP+GFWE MRDVVAREV+EYMTTTFSE SG
Sbjct: 181 GGDVAAASNRRSESLPSGFWEAMRDVVAREVKEYMTTTFSEKSG 224

[Close]

BLAST of Lcy12g020140 vs. NCBI nr
Match: XP_022941049.1 (transcription factor MYB44-like [Cucurbita moschata])

HSP 1 Score: 386.3 bits (991), Expect = 1.8e-103
Identity = 197/224 (87.95%), Postives = 206/224 (91.96%), Query Frame = 0


Query: 3   ININHSSSSPSTSESSSSDSSLSGK-PPPRNSAVPDKIKGPWSAEEDRVLTRLVERYGPR 62
           ++I+HSSSSPSTSESSS DSSLSGK  P RNS   DKIKGPWSAEEDRVLTRLVERYGPR
Sbjct: 1   MSIHHSSSSPSTSESSSDDSSLSGKLQPSRNSGDADKIKGPWSAEEDRVLTRLVERYGPR 60

Query: 63  NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLL 122
           NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLL
Sbjct: 61  NWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLL 120

Query: 123 PGRTDNAVKNHWNSTLKRRVRENRNSAGNHTSDVGGGGSVVAVDDDPLTALTLATPGIVS 182
           PGRTDNAVKNHWNSTLKRRVR+ R SA +H+SDV  GGS+VAVDDDPLTALTLATPGIV+
Sbjct: 121 PGRTDNAVKNHWNSTLKRRVRDQRKSAVDHSSDVVVGGSLVAVDDDPLTALTLATPGIVA 180

Query: 183 GGDVAPGSERRSESLPTGFWEVMRDVVAREVREYMTTTFSENSG 226
           GGD A  S RRSESLP+GFWE MRDVVAREVREYMTTTFSE SG
Sbjct: 181 GGDAAAASNRRSESLPSGFWEAMRDVVAREVREYMTTTFSEKSG 224

[Close]

BLAST of Lcy12g020140 vs. TAIR 10
Match: AT4G37260.1 (myb domain protein 73 )

HSP 1 Score: 182.2 bits (461), Expect = 4.7e-46
Identity = 94/180 (52.22%), Postives = 119/180 (66.11%), Query Frame = 0


Query: 37  DKIKGPWSAEEDRVLTRLVERYGPRNWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFS 96
           ++IKGPWS EED +L RLV+++GPRNWSLIS+ + GRSGKSCRLRWCNQL P VEHR FS
Sbjct: 10  ERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRAFS 69

Query: 97  PAEDDAIIAAHSRYGNRWATIARLLPGRTDNAVKNHWNSTLKRRVRENRNSAGNHTSDVG 156
             ED+ II AH+R+GN+WATI+RLL GRTDNA+KNHWNSTLKR+      S    + D G
Sbjct: 70  QEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKC-----SVEGQSCDFG 129

Query: 157 GGGSVVA--VDDDPLTALTLATPGIVSGGDVAPGSERRSE--SLPTGFWEVMRDVVAREV 213
           G G       ++ PL        G+ +G  ++PGS   S+     +G   V +  V  EV
Sbjct: 130 GNGGYDGNLGEEQPLKRTASGGGGVSTGLYMSPGSPSGSDVSEQSSGGAHVFKPTVRSEV 184

[Close]

BLAST of Lcy12g020140 vs. TAIR 10
Match: AT2G23290.1 (myb domain protein 70 )

HSP 1 Score: 179.1 bits (453), Expect = 4.0e-45
Identity = 93/171 (54.39%), Postives = 111/171 (64.91%), Query Frame = 0


Query: 37  DKIKGPWSAEEDRVLTRLVERYGPRNWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFS 96
           D+IKGPWS EED +L  LV+++GPRNWSLIS+ + GRSGKSCRLRWCNQL P VEHR F+
Sbjct: 10  DRIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEVEHRGFT 69

Query: 97  PAEDDAIIAAHSRYGNRWATIARLLPGRTDNAVKNHWNSTLKRRVRENRNSAGNHTS-DV 156
             EDD II AH+R+GN+WATIARLL GRTDNA+KNHWNSTLKR+            S D 
Sbjct: 70  AEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSGGGGGGEEGQSCDF 129

Query: 157 GGGGSVVA--VDDDPLTALTLATPGIV-------SGGDVAPGSERRSESLP 198
           GG G       D+ PL        G+V       +G DV+  S+     LP
Sbjct: 130 GGNGGYDGNLTDEKPLKRRASGGGGVVVVTALSPTGSDVSEQSQSSGSVLP 180

[Close]

BLAST of Lcy12g020140 vs. TAIR 10
Match: AT3G50060.1 (myb domain protein 77 )

HSP 1 Score: 178.7 bits (452), Expect = 5.2e-45
Identity = 77/104 (74.04%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 37  DKIKGPWSAEEDRVLTRLVERYGPRNWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFS 96
           D++KGPWS EED  L R+VE+YGPRNWS IS+ + GRSGKSCRLRWCNQL P VEHRPFS
Sbjct: 3   DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query: 97  PAEDDAIIAAHSRYGNRWATIARLLPGRTDNAVKNHWNSTLKRR 141
           P ED+ I+ A +++GN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct: 63  PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

[Close]

BLAST of Lcy12g020140 vs. TAIR 10
Match: AT5G67300.1 (myb domain protein r1 )

HSP 1 Score: 177.2 bits (448), Expect = 1.5e-44
Identity = 86/153 (56.21%), Postives = 106/153 (69.28%), Query Frame = 0


Query: 37  DKIKGPWSAEEDRVLTRLVERYGPRNWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFS 96
           D+IKGPWS EED  L RLV +YGPRNW++IS+ + GRSGKSCRLRWCNQL P VEHRPFS
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 97  PAEDDAIIAAHSRYGNRWATIARLLPGRTDNAVKNHWNSTLKRRVRENRNSAGNHTSDVG 156
             ED+ I  AH+++GN+WATIARLL GRTDNAVKNHWNSTLKR+     +   + + D  
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSEDHR 122

Query: 157 GGGSVVAVDDDPLTALTLATPGIVSGGDVAPGS 190
                V+    P+      +PG  +G DV+  S
Sbjct: 123 PVKRSVSAGSPPVVTGLYMSPGSPTGSDVSDSS 155

[Close]

BLAST of Lcy12g020140 vs. TAIR 10
Match: AT3G55730.1 (myb domain protein 109 )

HSP 1 Score: 161.4 bits (407), Expect = 8.6e-40
Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 0


Query: 15  SESSSSDSSLSGKPPPRNSAVPDKIKGPWSAEEDRVLTRLVERYGPRNWSLISRYVKGRS 74
           +E ++ DSS  G        +  K+KGPWS EED VLT+LV + GPRNWSLI+R + GRS
Sbjct: 31  AELAAGDSSGGGGCGGGGGGIRSKVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRS 90

Query: 75  GKSCRLRWCNQLCPGVEHRPFSPAEDDAIIAAHSRYGNRWATIARLLPGRTDNAVKNHWN 134
           GKSCRLRWCNQL P ++ +PFS  ED  II+AH+ +GN+WA IA+LL GRTDNA+KNHWN
Sbjct: 91  GKSCRLRWCNQLDPCLKRKPFSDEEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWN 150

Query: 135 STLKRRVRENRNS 148
           STL+R+  +  N+
Sbjct: 151 STLRRKYADLWNN 163

The following BLAST results are available for this feature:

BLAST of Lcy12g020140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23160	6.6e-45	52.22	Transcription factor MYB73 OS=Arabidopsis thaliana OX=3702 GN=MYB73 PE=1 SV=1	[more]
Q9SN12	7.3e-44	74.04	Transcription factor MYB77 OS=Arabidopsis thaliana OX=3702 GN=MYB77 PE=1 SV=1	[more]
Q9FDW1	2.1e-43	56.21	Transcription factor MYB44 OS=Arabidopsis thaliana OX=3702 GN=MYB44 PE=1 SV=1	[more]
Q42575	6.0e-38	54.00	Transcription factor MYB1 OS=Arabidopsis thaliana OX=3702 GN=MYB1 PE=2 SV=1	[more]
O04192	1.8e-34	52.14	Transcription factor MYB25 OS=Arabidopsis thaliana OX=3702 GN=MYB25 PE=2 SV=1	[more]

BLAST of Lcy12g020140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V9U0	2.2e-107	87.61	Transcriptional activator Myb-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BV53	2.2e-107	87.61	transcriptional activator Myb-like OS=Cucumis melo OX=3656 GN=LOC103493514 PE=4 ...	[more]
A0A6J1J4G1	5.9e-105	87.17	transcription factor MYB44-like OS=Cucurbita maxima OX=3661 GN=LOC111481160 PE=4...	[more]
A0A6J1FM32	8.6e-104	87.95	transcription factor MYB44-like OS=Cucurbita moschata OX=3662 GN=LOC111446453 PE...	[more]
A0A0A0L4S7	1.1e-103	85.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G638510 PE=4 SV=1	[more]

BLAST of Lcy12g020140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899055.1	4.3e-110	89.73	transcription factor MYB44-like [Benincasa hispida]	[more]
XP_008452503.1	4.5e-107	87.61	PREDICTED: transcriptional activator Myb-like [Cucumis melo] >KAA0064358.1 trans...	[more]
XP_022982283.1	1.2e-104	87.17	transcription factor MYB44-like [Cucurbita maxima]	[more]
KAG6608498.1	1.4e-103	87.95	Transcription factor MYB44, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_022941049.1	1.8e-103	87.95	transcription factor MYB44-like [Cucurbita moschata]	[more]

BLAST of Lcy12g020140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37260.1	4.7e-46	52.22	myb domain protein 73	[more]
AT2G23290.1	4.0e-45	54.39	myb domain protein 70	[more]
AT3G50060.1	5.2e-45	74.04	myb domain protein 77	[more]
AT5G67300.1	1.5e-44	56.21	myb domain protein r1	[more]
AT3G55730.1	8.6e-40	57.89	myb domain protein 109	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 91..139 e-value: 4.0E-15 score: 66.2 coord: 39..88 e-value: 2.6E-14 score: 63.5
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 87..137 score: 9.001018
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 35..86 score: 11.938955
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 94..137 e-value: 4.23141E-12 score: 57.2002
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 42..84 e-value: 3.59827E-15 score: 65.2894
None	No IPR available	GENE3D	1.10.10.60		coord: 39..91 e-value: 1.2E-21 score: 78.4
None	No IPR available	GENE3D	1.10.10.60		coord: 93..155 e-value: 1.2E-21 score: 78.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR45614	MYB PROTEIN-RELATED	coord: 4..212
None	No IPR available	PANTHER	PTHR45614:SF131	SUBFAMILY NOT NAMED	coord: 4..212
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 94..135 e-value: 1.0E-13 score: 51.2 coord: 40..85 e-value: 2.6E-15 score: 56.4
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 36..90 score: 25.394003
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 92..141 score: 22.985233
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 37..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g020140.1	Lcy12g020140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding