Lcy12g020020 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g020020
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Glycine dehydrogenase
Location	Chr12: 47222640 .. 47223671 (+)
RNA-Seq Expression	Lcy12g020020
Synteny	Lcy12g020020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAGCTGCTCTCCGGTGAACCGGTGAGGTGCATTTTCTTTCCCTACTTCTCTCTCCTTGAGATGATCGAAGAAATTTTCGATTTACGGCTAGATCAGAACTATGTTAAGAAGCGATTTGATTCAATTACTTCGCGATTGATTTCTGAAGCCGCTTTCACAACTCCATTTTAGTTAATATGGCGGTTCATTTTCATCGATCTTGCATTTTCTTCAATGCTGTCTTCGTTGTTATACAAATGTTTATGAGAGAATTCGCCGAGTTCTCAAATCGACATGAAATTTCGCAGGATTACAAAATCGGATTCGACGAATCGTTTTCAAAGGAATATCGGACTCGTAATTGAAATTTGGCGTCATAGACTTCTTTCAAGAAACTGATCCAATTCGGTTTCGGTTTCATTTTCAGCAGCAAGGTGTTTGTTATAATGCCTCAACGAGATTGACCTAAAAATCCGAGAAAAGAGAAAGGGAGAATATGACTTCTGGAGGAGGAATCGCCGCTTGGAATGTATTTGACAATGTGAAAACCACAACGAAGACGCCTGAAGCTCTAATCGCGGAGATCAATTCTGCAATTTCAAATCTCGAATATGCTCGAACCACCACTTGCTTAGAATCTCAAATTTCTCCTTCAGAGGATGAGATCTTTGGTGCGAGTTCAAGAACTCAATATGATGCTCGAATGGCGGATGAAGCGTACAAGGAAGGTTGTGCGGCATTGGCCGTTGGTAAACTTGATGAGGCTCTTCATTCGCTGAATGTTTCTCTTTCGAAATGTCCGCCTGAGAAGTCCTCTGCGGTTGCTAAGCTTCAGTCTCTCATCTCTCTCACGTCTCAGCAAATCCAGATCAGATCTTCCAATTGCCATGAAATTTCAGGAGATTAAACTCCTTTTTGATGTGAATGGTAAAGATTGCCTAGTTTAAACATGTTCTCTTCTTCCCATTTGTTCTTAATTTTTCTTCTGGGGATAGAATCTTTCTCATTGTTCTTCAATCATGTTCGACTGTGTGAATACGGTTTCTTATTT

mRNA sequence

AACAGCTGCTCTCCGGTGAACCGCAGCAAGGTGTTTGTTATAATGCCTCAACGAGATTGACCTAAAAATCCGAGAAAAGAGAAAGGGAGAATATGACTTCTGGAGGAGGAATCGCCGCTTGGAATGTATTTGACAATGTGAAAACCACAACGAAGACGCCTGAAGCTCTAATCGCGGAGATCAATTCTGCAATTTCAAATCTCGAATATGCTCGAACCACCACTTGCTTAGAATCTCAAATTTCTCCTTCAGAGGATGAGATCTTTGGTGCGAGTTCAAGAACTCAATATGATGCTCGAATGGCGGATGAAGCGTACAAGGAAGGTTGTGCGGCATTGGCCGTTGGTAAACTTGATGAGGCTCTTCATTCGCTGAATGTTTCTCTTTCGAAATGTCCGCCTGAGAAGTCCTCTGCGGTTGCTAAGCTTCAGTCTCTCATCTCTCTCACGTCTCAGCAAATCCAGATCAGATCTTCCAATTGCCATGAAATTTCAGGAGATTAAACTCCTTTTTGATGTGAATGGTAAAGATTGCCTAGTTTAAACATGTTCTCTTCTTCCCATTTGTTCTTAATTTTTCTTCTGGGGATAGAATCTTTCTCATTGTTCTTCAATCATGTTCGACTGTGTGAATACGGTTTCTTATTT

Coding sequence (CDS)

ATGACTTCTGGAGGAGGAATCGCCGCTTGGAATGTATTTGACAATGTGAAAACCACAACGAAGACGCCTGAAGCTCTAATCGCGGAGATCAATTCTGCAATTTCAAATCTCGAATATGCTCGAACCACCACTTGCTTAGAATCTCAAATTTCTCCTTCAGAGGATGAGATCTTTGGTGCGAGTTCAAGAACTCAATATGATGCTCGAATGGCGGATGAAGCGTACAAGGAAGGTTGTGCGGCATTGGCCGTTGGTAAACTTGATGAGGCTCTTCATTCGCTGAATGTTTCTCTTTCGAAATGTCCGCCTGAGAAGTCCTCTGCGGTTGCTAAGCTTCAGTCTCTCATCTCTCTCACGTCTCAGCAAATCCAGATCAGATCTTCCAATTGCCATGAAATTTCAGGAGATTAA

Protein sequence

MTSGGGIAAWNVFDNVKTTTKTPEALIAEINSAISNLEYARTTTCLESQISPSEDEIFGASSRTQYDARMADEAYKEGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLTSQQIQIRSSNCHEISGD

Homology

[Close]

BLAST of Lcy12g020020 vs. ExPASy TrEMBL
Match: A0A6J1FLM9 (uncharacterized protein LOC111446352 OS=Cucurbita moschata OX=3662 GN=LOC111446352 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.4e-54
Identity = 117/137 (85.40%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 1   MTSGGGIAAWNVFDNVKTTTKTPEALIAEINSAISNLEYARTTTCLESQISPS-EDEIFG 60
           M+SGGGIAAWNVFDNVKTTTKTPEALIAEIN+AI+NLEYAR+T  LES ISP+ +D   G
Sbjct: 16  MSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAFLESPISPTPQDRSSG 75

Query: 61  ASSRTQYDARMADEAYKEGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT 120
            SS TQYDAR+ADEAYK GCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT
Sbjct: 76  VSSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT 135

Query: 121 SQQIQIRSSNCHEISGD 137
           S+Q+QIRSSNCHEIS D
Sbjct: 136 SKQLQIRSSNCHEISED 152

[Close]

BLAST of Lcy12g020020 vs. ExPASy TrEMBL
Match: A0A0A0L090 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639170 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.4e-48
Identity = 110/138 (79.71%), Postives = 118/138 (85.51%), Query Frame = 0


Query: 1   MTSGGGIAAWNVFDNVKTTTKTPEALIAEINSAISNLEYARTTTCLESQISPS--EDEIF 60
           + S GGIAAWNVFD+VKTTTKTPEAL+ EI +AISNLEYARTT  LES ISP   EDE  
Sbjct: 15  VNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYLESPISPDEPEDEEP 74

Query: 61  GASSRTQYDARMADEAYKEGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISL 120
            A+SR+QYD RMAD AYK GC AL VGKLDEALHSLNVSLSKCPPEKSSAVAK+QSLISL
Sbjct: 75  SANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPEKSSAVAKIQSLISL 134

Query: 121 TSQQIQIRSSNCHEISGD 137
           TSQQ+QIRSSNC EIS D
Sbjct: 135 TSQQLQIRSSNCQEISED 152

[Close]

BLAST of Lcy12g020020 vs. ExPASy TrEMBL
Match: A0A5A7VF87 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003530 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.8e-48
Identity = 108/136 (79.41%), Postives = 116/136 (85.29%), Query Frame = 0


Query: 1   MTSGGGIAAWNVFDNVKTTTKTPEALIAEINSAISNLEYARTTTCLESQISPSEDEIFGA 60
           + S GGI  WNVFDNVKTTTKTPEAL+AEIN+AISNLEY RT   LES ISP EDE   A
Sbjct: 15  VNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYLESPISP-EDEEPSA 74

Query: 61  SSRTQYDARMADEAYKEGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLTS 120
           +SR+QYD R+AD AYK GC AL +GKLDEALHSLNVSLSKCPPEKSSAVAK+QSLISLTS
Sbjct: 75  NSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPEKSSAVAKIQSLISLTS 134

Query: 121 QQIQIRSSNCHEISGD 137
           QQIQIRSSNC EIS D
Sbjct: 135 QQIQIRSSNCQEISED 149

[Close]

BLAST of Lcy12g020020 vs. ExPASy TrEMBL
Match: A0A1S3BU07 (uncharacterized protein LOC103493531 OS=Cucumis melo OX=3656 GN=LOC103493531 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.8e-48
Identity = 108/136 (79.41%), Postives = 116/136 (85.29%), Query Frame = 0


Query: 1   MTSGGGIAAWNVFDNVKTTTKTPEALIAEINSAISNLEYARTTTCLESQISPSEDEIFGA 60
           + S GGI  WNVFDNVKTTTKTPEAL+AEIN+AISNLEY RT   LES ISP EDE   A
Sbjct: 15  VNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYLESPISP-EDEEPSA 74

Query: 61  SSRTQYDARMADEAYKEGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLTS 120
           +SR+QYD R+AD AYK GC AL +GKLDEALHSLNVSLSKCPPEKSSAVAK+QSLISLTS
Sbjct: 75  NSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPEKSSAVAKIQSLISLTS 134

Query: 121 QQIQIRSSNCHEISGD 137
           QQIQIRSSNC EIS D
Sbjct: 135 QQIQIRSSNCQEISED 149

[Close]

BLAST of Lcy12g020020 vs. ExPASy TrEMBL
Match: A0A6J1BP49 (uncharacterized protein LOC111026168 OS=Momordica charantia OX=3673 GN=LOC111026168 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.6e-44
Identity = 104/135 (77.04%), Postives = 112/135 (82.96%), Query Frame = 0


Query: 3   SGGGIAAWNVFDNVKTTTKTPEALIAEINSAISNLEYARTTTCLESQISP-SEDEIFGAS 62
           S GGI AWN FDNV  TTKTPEAL+AEIN+AIS +EYARTT CLES   P S+D   GAS
Sbjct: 35  SVGGIMAWNAFDNVTATTKTPEALMAEINAAISKIEYARTTACLESATPPASQDGGSGAS 94

Query: 63  SRTQYDARMADEAYKEGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLTSQ 122
              QYDARMADEAYK GCAALAVGKLD+ALHSLNVSLSKCPPEK+SAVAKL SLI+LTSQ
Sbjct: 95  LMPQYDARMADEAYKAGCAALAVGKLDDALHSLNVSLSKCPPEKTSAVAKLLSLITLTSQ 154

Query: 123 QIQIRSSNCHEISGD 137
           Q+  RSSNC EIS D
Sbjct: 155 QLH-RSSNCSEISED 168

[Close]

BLAST of Lcy12g020020 vs. NCBI nr
Match: KAG6608487.1 (hypothetical protein SDJN03_01829, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-54
Identity = 119/137 (86.86%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MTSGGGIAAWNVFDNVKTTTKTPEALIAEINSAISNLEYARTTTCLESQISPS-EDEIFG 60
           M+SGGGIAAWNVFDNVKTTTKTPEALIAEIN+AI+NLEYAR+T  LES ISP+ +D   G
Sbjct: 16  MSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAFLESPISPTPQDRSSG 75

Query: 61  ASSRTQYDARMADEAYKEGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT 120
           ASS TQYDAR+ADEAYK GCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT
Sbjct: 76  ASSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT 135

Query: 121 SQQIQIRSSNCHEISGD 137
           SQQ+QIRSSNCHEIS D
Sbjct: 136 SQQLQIRSSNCHEISED 152

[Close]

BLAST of Lcy12g020020 vs. NCBI nr
Match: XP_022940904.1 (uncharacterized protein LOC111446352 [Cucurbita moschata])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 117/137 (85.40%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 1   MTSGGGIAAWNVFDNVKTTTKTPEALIAEINSAISNLEYARTTTCLESQISPS-EDEIFG 60
           M+SGGGIAAWNVFDNVKTTTKTPEALIAEIN+AI+NLEYAR+T  LES ISP+ +D   G
Sbjct: 16  MSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAFLESPISPTPQDRSSG 75

Query: 61  ASSRTQYDARMADEAYKEGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT 120
            SS TQYDAR+ADEAYK GCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT
Sbjct: 76  VSSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLT 135

Query: 121 SQQIQIRSSNCHEISGD 137
           S+Q+QIRSSNCHEIS D
Sbjct: 136 SKQLQIRSSNCHEISED 152

[Close]

BLAST of Lcy12g020020 vs. NCBI nr
Match: XP_011654103.1 (uncharacterized protein LOC101212714 [Cucumis sativus] >KGN55178.1 hypothetical protein Csa_012701 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 2.8e-48
Identity = 110/138 (79.71%), Postives = 118/138 (85.51%), Query Frame = 0


Query: 1   MTSGGGIAAWNVFDNVKTTTKTPEALIAEINSAISNLEYARTTTCLESQISPS--EDEIF 60
           + S GGIAAWNVFD+VKTTTKTPEAL+ EI +AISNLEYARTT  LES ISP   EDE  
Sbjct: 15  VNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYLESPISPDEPEDEEP 74

Query: 61  GASSRTQYDARMADEAYKEGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISL 120
            A+SR+QYD RMAD AYK GC AL VGKLDEALHSLNVSLSKCPPEKSSAVAK+QSLISL
Sbjct: 75  SANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPEKSSAVAKIQSLISL 134

Query: 121 TSQQIQIRSSNCHEISGD 137
           TSQQ+QIRSSNC EIS D
Sbjct: 135 TSQQLQIRSSNCQEISED 152

[Close]

BLAST of Lcy12g020020 vs. NCBI nr
Match: XP_038899466.1 (uncharacterized protein LOC120086752 [Benincasa hispida] >XP_038899467.1 uncharacterized protein LOC120086752 [Benincasa hispida])

HSP 1 Score: 200.7 bits (509), Expect = 8.2e-48
Identity = 111/138 (80.43%), Postives = 116/138 (84.06%), Query Frame = 0


Query: 1   MTSGGGIAAWNVFDNVKTTTKTPEALIAEINSAISNLEYARTTTCLESQISP--SEDEIF 60
           M SG GIAAWNVFDNVKTTTKTPEAL+AEIN+AISN EYARTT CL+S ISP  SED   
Sbjct: 16  MNSGEGIAAWNVFDNVKTTTKTPEALMAEINAAISNFEYARTTACLQSPISPDDSEDGES 75

Query: 61  GASSRTQYDARMADEAYKEGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISL 120
            AS RTQY  RMAD +YK GCAA  VGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISL
Sbjct: 76  SASLRTQYVVRMADGSYKAGCAAPTVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISL 135

Query: 121 TSQQIQIRSSNCHEISGD 137
           TS Q+QIRSSN  EIS D
Sbjct: 136 TSHQLQIRSSNSQEISED 153

[Close]

BLAST of Lcy12g020020 vs. NCBI nr
Match: XP_008452533.1 (PREDICTED: uncharacterized protein LOC103493531 [Cucumis melo] >KAA0064371.1 uncharacterized protein E6C27_scaffold255G00720 [Cucumis melo var. makuwa] >TYK20216.1 uncharacterized protein E5676_scaffold134G003530 [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-47
Identity = 108/136 (79.41%), Postives = 116/136 (85.29%), Query Frame = 0


Query: 1   MTSGGGIAAWNVFDNVKTTTKTPEALIAEINSAISNLEYARTTTCLESQISPSEDEIFGA 60
           + S GGI  WNVFDNVKTTTKTPEAL+AEIN+AISNLEY RT   LES ISP EDE   A
Sbjct: 15  VNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYLESPISP-EDEEPSA 74

Query: 61  SSRTQYDARMADEAYKEGCAALAVGKLDEALHSLNVSLSKCPPEKSSAVAKLQSLISLTS 120
           +SR+QYD R+AD AYK GC AL +GKLDEALHSLNVSLSKCPPEKSSAVAK+QSLISLTS
Sbjct: 75  NSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPEKSSAVAKIQSLISLTS 134

Query: 121 QQIQIRSSNCHEISGD 137
           QQIQIRSSNC EIS D
Sbjct: 135 QQIQIRSSNCQEISED 149

The following BLAST results are available for this feature:

BLAST of Lcy12g020020 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g020020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FLM9	6.4e-54	85.40	uncharacterized protein LOC111446352 OS=Cucurbita moschata OX=3662 GN=LOC1114463...	[more]
A0A0A0L090	1.4e-48	79.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639170 PE=4 SV=1	[more]
A0A5A7VF87	6.8e-48	79.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BU07	6.8e-48	79.41	uncharacterized protein LOC103493531 OS=Cucumis melo OX=3656 GN=LOC103493531 PE=...	[more]
A0A6J1BP49	4.6e-44	77.04	uncharacterized protein LOC111026168 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]

BLAST of Lcy12g020020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608487.1	1.6e-54	86.86	hypothetical protein SDJN03_01829, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022940904.1	1.3e-53	85.40	uncharacterized protein LOC111446352 [Cucurbita moschata]	[more]
XP_011654103.1	2.8e-48	79.71	uncharacterized protein LOC101212714 [Cucumis sativus] >KGN55178.1 hypothetical ...	[more]
XP_038899466.1	8.2e-48	80.43	uncharacterized protein LOC120086752 [Benincasa hispida] >XP_038899467.1 unchara...	[more]
XP_008452533.1	1.4e-47	79.41	PREDICTED: uncharacterized protein LOC103493531 [Cucumis melo] >KAA0064371.1 unc...	[more]

BLAST of Lcy12g020020 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g020020.1	Lcy12g020020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane