Lcy12g019480 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy12g019480
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein RICE SALT SENSITIVE 3-like
Location	Chr12: 46801336 .. 46801773 (+)
RNA-Seq Expression	Lcy12g019480
Synteny	Lcy12g019480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGAAAACCAATCAACTGGGTTGAAGAGATTGTTCAGCTCCATGCTTGATGAATCTCCTATCAAATCCATCAACTTAGGCTGGAACACACCACAACATTCCTTGGCTTCTGGATCGCCAGTGTGGCCAATCCCCCCTCTTCTTCCTTCCACTTCATGCAGTCTTGGAACTTTTAAATCAAAGTTGCCTTCTAATAGCACCCCCCCTTGTGAAGCCAACGATCGTCCCAACGCAGTTCAACTCATGTCCATCAACCACCCGAACCCGAATACAATGAAGGCTACCACCAACTCAGAAGTAAAGATAGAAACCTCCAGCCAGTCAGATGCAGGTCAAGAAACAGAAGAGAAACCGAGTTGCATAAACCCTAGTGTGGGGTTTGAAGATGGATTCAGGCTTGGAGAGACAAGCCAGAATGGTCTAAATCTCAATTAA

mRNA sequence

ATGATCGAAAACCAATCAACTGGGTTGAAGAGATTGTTCAGCTCCATGCTTGATGAATCTCCTATCAAATCCATCAACTTAGGCTGGAACACACCACAACATTCCTTGGCTTCTGGATCGCCAGTGTGGCCAATCCCCCCTCTTCTTCCTTCCACTTCATGCAGTCTTGGAACTTTTAAATCAAAGTTGCCTTCTAATAGCACCCCCCCTTGTGAAGCCAACGATCGTCCCAACGCAGTTCAACTCATGTCCATCAACCACCCGAACCCGAATACAATGAAGGCTACCACCAACTCAGAAGTAAAGATAGAAACCTCCAGCCAGTCAGATGCAGGTCAAGAAACAGAAGAGAAACCGAGTTGCATAAACCCTAGTGTGGGGTTTGAAGATGGATTCAGGCTTGGAGAGACAAGCCAGAATGGTCTAAATCTCAATTAA

Coding sequence (CDS)

ATGATCGAAAACCAATCAACTGGGTTGAAGAGATTGTTCAGCTCCATGCTTGATGAATCTCCTATCAAATCCATCAACTTAGGCTGGAACACACCACAACATTCCTTGGCTTCTGGATCGCCAGTGTGGCCAATCCCCCCTCTTCTTCCTTCCACTTCATGCAGTCTTGGAACTTTTAAATCAAAGTTGCCTTCTAATAGCACCCCCCCTTGTGAAGCCAACGATCGTCCCAACGCAGTTCAACTCATGTCCATCAACCACCCGAACCCGAATACAATGAAGGCTACCACCAACTCAGAAGTAAAGATAGAAACCTCCAGCCAGTCAGATGCAGGTCAAGAAACAGAAGAGAAACCGAGTTGCATAAACCCTAGTGTGGGGTTTGAAGATGGATTCAGGCTTGGAGAGACAAGCCAGAATGGTCTAAATCTCAATTAA

Protein sequence

MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLASGSPVWPIPPLLPSTSCSLGTFKSKLPSNSTPPCEANDRPNAVQLMSINHPNPNTMKATTNSEVKIETSSQSDAGQETEEKPSCINPSVGFEDGFRLGETSQNGLNLN

Homology

[Close]

BLAST of Lcy12g019480 vs. ExPASy TrEMBL
Match: A0A1S3BTL6 (transcription factor LHW-like OS=Cucumis melo OX=3656 GN=LOC103493571 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 9.1e-59
Identity = 121/151 (80.13%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLASGSPVWPIPPLLPSTSCSLGTFK 60
           MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSL +GSPVWPIPPLLPSTSCSLGTFK
Sbjct: 260 MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLTTGSPVWPIPPLLPSTSCSLGTFK 319

Query: 61  SKLPSNSTPPCEANDRPNAVQLMSINHPNPNTMKATTNSEVKIETSSQSDAGQETEEKPS 120
           S  PSNSTPPCE N RP+ VQ MSINHPNPNT KA +NSEVKIETS++ DA QETEEK +
Sbjct: 320 SNFPSNSTPPCEVNGRPDPVQHMSINHPNPNTTKA-SNSEVKIETSNKLDAAQETEEKQN 379

Query: 121 CINPSVGFED------GFRLGETSQNGLNLN 146
           C+NPS+ FED      GFRLGET+QNG N+N
Sbjct: 380 CLNPSLRFEDGVMTELGFRLGETTQNGQNMN 409

[Close]

BLAST of Lcy12g019480 vs. ExPASy TrEMBL
Match: A0A5A7V7T5 (Transcription factor LHW-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001200 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 9.1e-59
Identity = 121/151 (80.13%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLASGSPVWPIPPLLPSTSCSLGTFK 60
           MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSL +GSPVWPIPPLLPSTSCSLGTFK
Sbjct: 287 MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLTTGSPVWPIPPLLPSTSCSLGTFK 346

Query: 61  SKLPSNSTPPCEANDRPNAVQLMSINHPNPNTMKATTNSEVKIETSSQSDAGQETEEKPS 120
           S  PSNSTPPCE N RP+ VQ MSINHPNPNT KA +NSEVKIETS++ DA QETEEK +
Sbjct: 347 SNFPSNSTPPCEVNGRPDPVQHMSINHPNPNTTKA-SNSEVKIETSNKLDAAQETEEKQN 406

Query: 121 CINPSVGFED------GFRLGETSQNGLNLN 146
           C+NPS+ FED      GFRLGET+QNG N+N
Sbjct: 407 CLNPSLRFEDGVMTELGFRLGETTQNGQNMN 436

[Close]

BLAST of Lcy12g019480 vs. ExPASy TrEMBL
Match: A0A5D3D9D5 (Transcription factor LHW-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003070 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 9.1e-59
Identity = 121/151 (80.13%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLASGSPVWPIPPLLPSTSCSLGTFK 60
           MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSL +GSPVWPIPPLLPSTSCSLGTFK
Sbjct: 260 MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLTTGSPVWPIPPLLPSTSCSLGTFK 319

Query: 61  SKLPSNSTPPCEANDRPNAVQLMSINHPNPNTMKATTNSEVKIETSSQSDAGQETEEKPS 120
           S  PSNSTPPCE N RP+ VQ MSINHPNPNT KA +NSEVKIETS++ DA QETEEK +
Sbjct: 320 SNFPSNSTPPCEVNGRPDPVQHMSINHPNPNTTKA-SNSEVKIETSNKLDAAQETEEKQN 379

Query: 121 CINPSVGFED------GFRLGETSQNGLNLN 146
           C+NPS+ FED      GFRLGET+QNG N+N
Sbjct: 380 CLNPSLRFEDGVMTELGFRLGETTQNGQNMN 409

[Close]

BLAST of Lcy12g019480 vs. ExPASy TrEMBL
Match: A0A0A0L0D2 (bHLH-MYC_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641610 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.9e-58
Identity = 120/151 (79.47%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLASGSPVWPIPPLLPSTSCSLGTFK 60
           MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSL +GSPVWPIPPLLPSTSCSLGTFK
Sbjct: 260 MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLTTGSPVWPIPPLLPSTSCSLGTFK 319

Query: 61  SKLPSNSTPPCEANDRPNAVQLMSINHPNPNTMKATTNSEVKIETSSQSDAGQETEEKPS 120
           S  PSNSTPPCE NDRP+ VQ MSINHP PNT    +NSEVKIETS++ DA QETEEK +
Sbjct: 320 SNFPSNSTPPCEVNDRPDPVQHMSINHPTPNT--KASNSEVKIETSNKLDAAQETEEKQN 379

Query: 121 CINPSVGFED------GFRLGETSQNGLNLN 146
           C+NPS+ FED      GFRLGET+QNG NLN
Sbjct: 380 CLNPSLRFEDGVMIELGFRLGETTQNGQNLN 408

[Close]

BLAST of Lcy12g019480 vs. ExPASy TrEMBL
Match: A0A6J1FLF9 (protein RICE SALT SENSITIVE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111446313 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.0e-57
Identity = 126/152 (82.89%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 1   MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLASGSPVWPIPPLLPSTSCSLGTFK 60
           MIENQSTGLKRLFSSMLDES IKSINLGWNTPQH  A+GSPVWPIPPLLPSTSCSL TFK
Sbjct: 227 MIENQSTGLKRLFSSMLDESSIKSINLGWNTPQHPSATGSPVWPIPPLLPSTSCSLRTFK 286

Query: 61  SKLPSNSTPPCEANDRPNAVQLMSINHPNPNTMKATTNSEVKIETSSQSDAGQETEEKPS 120
           SKLPSNSTP CEAN+  ++VQLMSINHPNPNTMKA TNSEVKIETSSQ DA QETEEKPS
Sbjct: 287 SKLPSNSTPRCEANECLDSVQLMSINHPNPNTMKA-TNSEVKIETSSQLDAAQETEEKPS 346

Query: 121 CINPS-VGFED------GFRLGETSQNGLNLN 146
             NP  +GFED      GFRLGETSQNGL+LN
Sbjct: 347 WKNPGRLGFEDGMVTELGFRLGETSQNGLSLN 377

[Close]

BLAST of Lcy12g019480 vs. NCBI nr
Match: KAA0064412.1 (transcription factor LHW-like [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 1.9e-58
Identity = 121/151 (80.13%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLASGSPVWPIPPLLPSTSCSLGTFK 60
           MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSL +GSPVWPIPPLLPSTSCSLGTFK
Sbjct: 287 MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLTTGSPVWPIPPLLPSTSCSLGTFK 346

Query: 61  SKLPSNSTPPCEANDRPNAVQLMSINHPNPNTMKATTNSEVKIETSSQSDAGQETEEKPS 120
           S  PSNSTPPCE N RP+ VQ MSINHPNPNT KA +NSEVKIETS++ DA QETEEK +
Sbjct: 347 SNFPSNSTPPCEVNGRPDPVQHMSINHPNPNTTKA-SNSEVKIETSNKLDAAQETEEKQN 406

Query: 121 CINPSVGFED------GFRLGETSQNGLNLN 146
           C+NPS+ FED      GFRLGET+QNG N+N
Sbjct: 407 CLNPSLRFEDGVMTELGFRLGETTQNGQNMN 436

[Close]

BLAST of Lcy12g019480 vs. NCBI nr
Match: XP_008452590.1 (PREDICTED: transcription factor LHW-like [Cucumis melo] >XP_008452591.1 PREDICTED: transcription factor LHW-like [Cucumis melo] >XP_008452592.1 PREDICTED: transcription factor LHW-like [Cucumis melo] >XP_008452595.1 PREDICTED: transcription factor LHW-like [Cucumis melo] >XP_008452596.1 PREDICTED: transcription factor LHW-like [Cucumis melo] >XP_016901254.1 PREDICTED: transcription factor LHW-like [Cucumis melo] >XP_016901255.1 PREDICTED: transcription factor LHW-like [Cucumis melo] >TYK20175.1 transcription factor LHW-like [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 1.9e-58
Identity = 121/151 (80.13%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 1   MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLASGSPVWPIPPLLPSTSCSLGTFK 60
           MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSL +GSPVWPIPPLLPSTSCSLGTFK
Sbjct: 260 MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLTTGSPVWPIPPLLPSTSCSLGTFK 319

Query: 61  SKLPSNSTPPCEANDRPNAVQLMSINHPNPNTMKATTNSEVKIETSSQSDAGQETEEKPS 120
           S  PSNSTPPCE N RP+ VQ MSINHPNPNT KA +NSEVKIETS++ DA QETEEK +
Sbjct: 320 SNFPSNSTPPCEVNGRPDPVQHMSINHPNPNTTKA-SNSEVKIETSNKLDAAQETEEKQN 379

Query: 121 CINPSVGFED------GFRLGETSQNGLNLN 146
           C+NPS+ FED      GFRLGET+QNG N+N
Sbjct: 380 CLNPSLRFEDGVMTELGFRLGETTQNGQNMN 409

[Close]

BLAST of Lcy12g019480 vs. NCBI nr
Match: XP_011654130.1 (transcription factor LHW [Cucumis sativus] >XP_011654131.1 transcription factor LHW [Cucumis sativus] >XP_031740357.1 transcription factor LHW [Cucumis sativus] >XP_031740358.1 transcription factor LHW [Cucumis sativus] >KGN55228.1 hypothetical protein Csa_012369 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-57
Identity = 120/151 (79.47%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLASGSPVWPIPPLLPSTSCSLGTFK 60
           MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSL +GSPVWPIPPLLPSTSCSLGTFK
Sbjct: 260 MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLTTGSPVWPIPPLLPSTSCSLGTFK 319

Query: 61  SKLPSNSTPPCEANDRPNAVQLMSINHPNPNTMKATTNSEVKIETSSQSDAGQETEEKPS 120
           S  PSNSTPPCE NDRP+ VQ MSINHP PNT    +NSEVKIETS++ DA QETEEK +
Sbjct: 320 SNFPSNSTPPCEVNDRPDPVQHMSINHPTPNT--KASNSEVKIETSNKLDAAQETEEKQN 379

Query: 121 CINPSVGFED------GFRLGETSQNGLNLN 146
           C+NPS+ FED      GFRLGET+QNG NLN
Sbjct: 380 CLNPSLRFEDGVMIELGFRLGETTQNGQNLN 408

[Close]

BLAST of Lcy12g019480 vs. NCBI nr
Match: XP_023524486.1 (protein RICE SALT SENSITIVE 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.0 bits (593), Expect = 1.6e-57
Identity = 128/152 (84.21%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 1   MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLASGSPVWPIPPLLPSTSCSLGTFK 60
           MIENQSTGLKRLFSSMLDES IKSINLGWNTPQH  ASGSPVWPIPPLLPSTSCSL TFK
Sbjct: 227 MIENQSTGLKRLFSSMLDESSIKSINLGWNTPQHPSASGSPVWPIPPLLPSTSCSLRTFK 286

Query: 61  SKLPSNSTPPCEANDRPNAVQLMSINHPNPNTMKATTNSEVKIETSSQSDAGQETEEKPS 120
           SKLPSNSTP CEAN+  N+VQLMSINHPNPNTMKA TNSEVKIETSSQ DA QETEEKPS
Sbjct: 287 SKLPSNSTPRCEANECFNSVQLMSINHPNPNTMKA-TNSEVKIETSSQLDAAQETEEKPS 346

Query: 121 CINPS-VGFED------GFRLGETSQNGLNLN 146
             NP  +GFED      GFRLGETSQNGL+LN
Sbjct: 347 WKNPGRLGFEDGMVTELGFRLGETSQNGLSLN 377

[Close]

BLAST of Lcy12g019480 vs. NCBI nr
Match: XP_022940839.1 (protein RICE SALT SENSITIVE 3-like [Cucurbita moschata] >XP_022940840.1 protein RICE SALT SENSITIVE 3-like [Cucurbita moschata] >XP_022940841.1 protein RICE SALT SENSITIVE 3-like [Cucurbita moschata])

HSP 1 Score: 230.3 bits (586), Expect = 1.0e-56
Identity = 126/152 (82.89%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 1   MIENQSTGLKRLFSSMLDESPIKSINLGWNTPQHSLASGSPVWPIPPLLPSTSCSLGTFK 60
           MIENQSTGLKRLFSSMLDES IKSINLGWNTPQH  A+GSPVWPIPPLLPSTSCSL TFK
Sbjct: 227 MIENQSTGLKRLFSSMLDESSIKSINLGWNTPQHPSATGSPVWPIPPLLPSTSCSLRTFK 286

Query: 61  SKLPSNSTPPCEANDRPNAVQLMSINHPNPNTMKATTNSEVKIETSSQSDAGQETEEKPS 120
           SKLPSNSTP CEAN+  ++VQLMSINHPNPNTMKA TNSEVKIETSSQ DA QETEEKPS
Sbjct: 287 SKLPSNSTPRCEANECLDSVQLMSINHPNPNTMKA-TNSEVKIETSSQLDAAQETEEKPS 346

Query: 121 CINPS-VGFED------GFRLGETSQNGLNLN 146
             NP  +GFED      GFRLGETSQNGL+LN
Sbjct: 347 WKNPGRLGFEDGMVTELGFRLGETSQNGLSLN 377

The following BLAST results are available for this feature:

BLAST of Lcy12g019480 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy12g019480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BTL6	9.1e-59	80.13	transcription factor LHW-like OS=Cucumis melo OX=3656 GN=LOC103493571 PE=4 SV=1	[more]
A0A5A7V7T5	9.1e-59	80.13	Transcription factor LHW-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3D9D5	9.1e-59	80.13	Transcription factor LHW-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A0A0L0D2	5.9e-58	79.47	bHLH-MYC_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641610 ...	[more]
A0A6J1FLF9	5.0e-57	82.89	protein RICE SALT SENSITIVE 3-like OS=Cucurbita moschata OX=3662 GN=LOC111446313...	[more]

BLAST of Lcy12g019480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064412.1	1.9e-58	80.13	transcription factor LHW-like [Cucumis melo var. makuwa]	[more]
XP_008452590.1	1.9e-58	80.13	PREDICTED: transcription factor LHW-like [Cucumis melo] >XP_008452591.1 PREDICTE...	[more]
XP_011654130.1	1.2e-57	79.47	transcription factor LHW [Cucumis sativus] >XP_011654131.1 transcription factor ...	[more]
XP_023524486.1	1.6e-57	84.21	protein RICE SALT SENSITIVE 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022940839.1	1.0e-56	82.89	protein RICE SALT SENSITIVE 3-like [Cucurbita moschata] >XP_022940840.1 protein ...	[more]

BLAST of Lcy12g019480 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..120
None	No IPR available	PANTHER	PTHR46633	TRANSCRIPTION FACTOR MYC/MYB-RELATED	coord: 3..135
None	No IPR available	PANTHER	PTHR46633:SF6	TRANSCRIPTION FACTOR MYC/MYB-RELATED	coord: 3..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy12g019480.1	Lcy12g019480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane